A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig007551Pisum_contig007551genetic_marker
Pisum_contig007552Pisum_contig007552genetic_marker
Pisum_contig007554Pisum_contig007554genetic_marker
Pisum_contig007569Pisum_contig007569genetic_marker
Pisum_contig007574Pisum_contig007574genetic_marker
Pisum_contig007578Pisum_contig007578genetic_marker
Pisum_contig007581Pisum_contig007581genetic_marker
Pisum_contig007584Pisum_contig007584genetic_marker
Pisum_contig007586Pisum_contig007586genetic_marker
Pisum_contig021536Pisum_contig021536genetic_marker
Pisum_contig021539Pisum_contig021539genetic_marker
Pisum_contig021542Pisum_contig021542genetic_marker
Pisum_contig021549Pisum_contig021549genetic_marker
Pisum_contig021553Pisum_contig021553genetic_marker
Pisum_contig021557Pisum_contig021557genetic_marker
Pisum_contig021565Pisum_contig021565genetic_marker
Pisum_contig021567Pisum_contig021567genetic_marker
Pisum_contig021572Pisum_contig021572genetic_marker
Pisum_contig021573Pisum_contig021573genetic_marker
Pisum_contig021579Pisum_contig021579genetic_marker
Pisum_contig021582Pisum_contig021582genetic_marker
Pisum_contig051674Pisum_contig051674genetic_marker
Pisum_contig051678Pisum_contig051678genetic_marker
Pisum_contig051680Pisum_contig051680genetic_marker
Pisum_contig051681Pisum_contig051681genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States