BARC-PV_1.0_Chr01_3563719_T_C

Marker Overview

Name

Alias

BARCPV_1.0_Chr01_3563719_T_C
715648190
ss715648190

dbSNP ID

715648190

SNP Array ID

BARCBean6K_3:

BARC-PV_1.0_Chr01_3563719_T_C

Type

SNP

SNP Alleles

T/C

5' Flanking Sequence

GAGACACTCTTCACTTCAACACACATAAAAAACAACCATTAACCACACTAGATTATTGTT

3' Flanking Sequence

AATACTTGTGCTGTTGTGTAACTCAAAACTTTCATTGTTTTCCTTTATCTTCTTGTGTTT

Species

Phaseolus vulgaris

Publication

[view all]

Contact

Qijian Song

References

External references for this genetic_marker


Database	Accession
dbSNP	715648190

Relationships

The following marker_locus feature(s) are an instance of this genetic_marker:


Feature Name	Unique Name	Species	Type
BARCPV_1.0_Chr01_3563719_T_C	BARCPV_1.0_Chr01_3563719_T_C-15.332	Phaseolus vulgaris	marker_locus
ss715648190	ss715648190	Phaseolus vulgaris	marker_locus

Publications


Year	Publication
2015	Song Q, Jia G, Hyten DL, Jenkins J, Hwang EY, Schroeder SG, Osorno JM, Schmutz J, Jackson SA, McClean PE, Cregan PB. SNP Assay Development for Linkage Map Construction, Anchoring Whole-Genome Sequence, and Other Genetic and Genomic Applications in Common Bean. G3 (Bethesda, Md.). 2015 Aug 28; 5(11):2285-90.

Contact

Name

Details

Qijian Song

First name:	Qijian
Last name:	Song
Institution:	USDA-ARS
Address:	Beltsville, Maryland 20705
Country:	United States
Email:	Qijian.Song@ars.usda.gov
Last update:	Aug 2015

Libraries


Library Name	Type
BARCBean6K_1	SNP_chip
BARCBean6K_3	SNP_chip

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Bean-Stampede/RedHawk-F2	LG01	N/A	15.33	BARCPV_1.0_Chr01_3563719_T_C-15.332	View
2	Bean-CAL96/[MLB-49-89A]-RIL	LG01	N/A	18.93	ss715648190	View

Sequence

>BARC-PV_1.0_Chr01_3563719_T_C ID=BARC-PV_1.0_Chr01_3563719_T_C|Name=BARC-PV_1.0_Chr01_3563719_T_C|organism=Phaseolus vulgaris|type=genetic_marker|length=121bp
GAGACACTCTTCACTTCAACACACATAAAAAACAACCATTAACCACACTA
GATTATTGTTYAATACTTGTGCTGTTGTGTAACTCAAAACTTTCATTGTT
TTCCTTTATCTTCTTGTGTTT