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Marker Overview
Name | BARC-PV_1.0_Chr01_3808113_T_C |
Alias | BARCPV_1.0_Chr01_3808113_T_C 715640553 ss715640553
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dbSNP ID | 715640553 |
SNP Array ID | BARCBean6K_3: | BARC-PV_1.0_Chr01_3808113_T_C |
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Type | SNP |
SNP Alleles | T/C |
5' Flanking Sequence | AAAAGCACCTAAAACACCTATGAAATTGTATCTAAATTTTATCCAAAATATATACCTAAG |
3' Flanking Sequence | CCATGAAAGACCAAGGCTAAGCATAGAAAACTGTGAGGTGCACGGACATGTGTTGAAAAT |
Species | Phaseolus vulgaris |
Publication | [view all] |
Contact | Qijian Song
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References
External references for this genetic_marker
Relationships
The following marker_locus feature(s) are an instance of this genetic_marker:
Feature Name | Unique Name | Species | Type |
BARCPV_1.0_Chr01_3808113_T_C | BARCPV_1.0_Chr01_3808113_T_C-15.502 | Phaseolus vulgaris | marker_locus |
BARC-PV_1.0_Chr01_3808113_T_C | BARC-PV_1.0_Chr01_3808113_T_C | Phaseolus vulgaris | marker_locus |
ss715640553 | ss715640553 | Phaseolus vulgaris | marker_locus |
Publications
Year | Publication |
2015 | Song Q, Jia G, Hyten DL, Jenkins J, Hwang EY, Schroeder SG, Osorno JM, Schmutz J, Jackson SA, McClean PE, Cregan PB. SNP Assay Development for Linkage Map Construction, Anchoring Whole-Genome Sequence, and Other Genetic and Genomic Applications in Common Bean. G3 (Bethesda, Md.). 2015 Aug 28; 5(11):2285-90. |
Libraries
Library Name | Type |
BARCBean6K_2 | SNP_chip |
BARCBean6K_3 | SNP_chip |
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Bean-Stampede/RedHawk-F2 | LG01 | N/A | 15.5 | BARCPV_1.0_Chr01_3808113_T_C-15.502 | View |
2 | Bean-Ruda/AND277-F10 | LG01 | N/A | 94.1 | BARC-PV_1.0_Chr01_3808113_T_C | View |
3 | Bean-CAL96/[MLB-49-89A]-RIL | LG01 | N/A | 19.57 | ss715640553 | View |
Sequence
>BARC-PV_1.0_Chr01_3808113_T_C ID=BARC-PV_1.0_Chr01_3808113_T_C|Name=BARC-PV_1.0_Chr01_3808113_T_C|organism=Phaseolus vulgaris|type=genetic_marker|length=121bp AAAAGCACCTAAAACACCTATGAAATTGTATCTAAATTTTATCCAAAATA TATACCTAAGYCCATGAAAGACCAAGGCTAAGCATAGAAAACTGTGAGGT GCACGGACATGTGTTGAAAAT
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