Cicer_arietinum_v1_Contig2446

Contig Overview


Name	Cicer_arietinum_v1_Contig2446
Unique Name	Cicer_arietinum_v1_Contig2446
Type	contig
Organism	Cicer arietinum (chickpea)
Sequence length	857

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
HO067329	EST	HO067329:7..409 +
EL585384	EST	EL585384:233..416 +
GR403544	EST	GR403544:1..515 +
GR915523	EST	GR915523:88..547 +
EL585365	EST	EL585365:233..776 +
GR914623	EST	GR914623:391..823 -
FE669610	EST	FE669610:369..820 -
EL585389	EST	EL585389:233..788 +
HO664089	EST	HO664089:348..807 -
FE669716	EST	FE669716:334..861 -

Unigenes

This contig is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	contig

Analyses

This contig is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
KEGG analysis for Cicer arietinum unigene v1	2011-01-05
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Relationships

The following EST feature(s) are a part of this contig:


Feature Name	Unique Name	Species	Type
HO067329	HO067329	Cicer arietinum	EST
EL585384	EL585384	Cicer arietinum	EST
GR403544	GR403544	Cicer arietinum	EST
GR915523	GR915523	Cicer arietinum	EST
EL585365	EL585365	Cicer arietinum	EST
GR914623	GR914623	Cicer arietinum	EST
FE669610	FE669610	Cicer arietinum	EST
EL585389	EL585389	Cicer arietinum	EST
HO664089	HO664089	Cicer arietinum	EST
FE669716	FE669716	Cicer arietinum	EST

Homology

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. SwissProt
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.836e-11
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1

Query:  274 SAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            SAFFVF+E+FRKT+K ++P  K+V+ VGKAGG+KWK LT                EYEK L AYN
Sbjct:   41 SAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYN 105

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. SwissProt
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.398e-11
Identity = 35/65 (53.85%), Postives = 41/65 (63.08%), Query Frame = 1

Query:  274 SAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            SAFFVF+EEFRK F  E+P  KAVSAVGKA G KWK+++               VEYEK + AYN
Sbjct:   49 SAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYN 113

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. SwissProt
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.976e-11
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 1

Query:  274 SAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            SAFFVF+EEFRK FK +NP  K+V+AVGKA G++WKSL+               +EY K + AYN
Sbjct:   46 SAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYN 110

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. SwissProt
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 1.718e-9
Identity = 32/65 (49.23%), Postives = 40/65 (61.54%), Query Frame = 1

Query:  274 SAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            SAFFVF+ EFR+ FK +NP  K+V+AVGKA GE+WKSL+                EY K + AYN
Sbjct:   47 SAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYN 111

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. SwissProt
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.481e-8
Identity = 30/65 (46.15%), Postives = 40/65 (61.54%), Query Frame = 1

Query:  274 SAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            SAFFVF+ +FR+ +K ++P  K+V+AVGKA GE+WKSL+                EYE  L AYN
Sbjct:   50 SAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYN 114

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. TrEMBL
Match: Q1EMR5_PLAMJ (HMG-protein (Fragment) OS=Plantago major GN=hmg1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.072e-20
Identity = 59/112 (52.68%), Postives = 64/112 (57.14%), Query Frame = 1

Query:  133 RDVLKPVDDRKVGKRKAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            ++ LKPVDDRKVGKRKAA                             SAFFVFLEEFR+TFK ENP +KAVSAVGKAGGEKWKSLT                EYEKL+NAYN
Sbjct:   59 KETLKPVDDRKVGKRKAA--AAPKVKKPAAKKDKKAKKDPNKPKRPPSAFFVFLEEFRQTFKKENPNIKAVSAVGKAGGEKWKSLTDAEKAPYEAKAAKRKSEYEKLMNAYN 168

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. TrEMBL
Match: C6SVP1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.600e-19
Identity = 58/113 (51.33%), Postives = 64/113 (56.64%), Query Frame = 1

Query:  130 SRDVLKPVDDRKVGKRKAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            S++ LKPVDDRKVGKRKA+                             SAFFVFLEEFRKTFKAENP VKAVS VGKAGGEKWKSL+                EYEKL+ AY+
Sbjct:   13 SKESLKPVDDRKVGKRKAS---GKPGRSSAPKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPNVKAVSVVGKAGGEKWKSLSSAEKAPYESKAAKRKAEYEKLIKAYD 122

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. TrEMBL
Match: A5BH86_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023651 PE=4 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.686e-18
Identity = 54/113 (47.79%), Postives = 63/113 (55.75%), Query Frame = 1

Query:  130 SRDVLKPVDDRKVGKRKAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            +++ LKP +DRK+GKRKAA                             SAFFVFLEEFRK FK ENP VKAVSAVGKAGGE+WKSL+                EYEK++NAYN
Sbjct:   14 TKEALKPAEDRKIGKRKAAVKAEKSSKRATTKDKKAKKDPNKPKRPP-SAFFVFLEEFRKVFKKENPNVKAVSAVGKAGGERWKSLSEAEKAPYEAKAAKKKAEYEKIMNAYN 125

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. TrEMBL
Match: C6SXC8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.201e-18
Identity = 57/112 (50.89%), Postives = 62/112 (55.36%), Query Frame = 1

Query:  130 SRDVLKPVDDRKVGKRKAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAY 465
            S++ LKPVDDRKVGKRKA+                             SAF VFLEEFRKTFKAENP VKAVS VGKAGGEKWKSL+                EYEKL+ AY
Sbjct:   13 SKESLKPVDDRKVGKRKAS---GKPEKSRAPKKEKKAKKDPNKPKRPPSAFLVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSAEKAPYEAKAAKRKAEYEKLIKAY 121

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. TrEMBL
Match: B9SQ35_RICCO (DNA-binding protein MNB1B, putative OS=Ricinus communis GN=RCOM_0644150 PE=4 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.093e-17
Identity = 55/113 (48.67%), Postives = 62/113 (54.87%), Query Frame = 1

Query:  130 SRDVLKPVDDRKVGKRKAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            S+D LKP DDRKVGKRKAA                             SAFFVFLEEFRKTFK ENP+V +V+AVGKAGG KWKS++                EY KL+NAYN
Sbjct:   13 SKDALKPADDRKVGKRKAA-AAVDRSSKLKAKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPSVTSVAAVGKAGGAKWKSMSSAEKAPYEAKAAKKKDEYGKLMNAYN 124

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. TrEMBL
Match: Q3EAL6_ARATH (AT3G51880 protein OS=Arabidopsis thaliana GN=AT3G51880 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.152e-17
Identity = 53/113 (46.90%), Postives = 62/113 (54.87%), Query Frame = 1

Query:  130 SRDVLKPVDDRKVGKRKAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            +++ LKPVDDRKVGKRKA                              SAFFVFLE+FR TFK ENP VKAVSAVGKAGG+KWKS++                EYEK ++AYN
Sbjct:   13 TKEALKPVDDRKVGKRKAP---AEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYN 122

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. TrEMBL
Match: O49595_ARATH (At3g51880/ORF13 OS=Arabidopsis thaliana GN=HMGalpha PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.152e-17
Identity = 53/113 (46.90%), Postives = 62/113 (54.87%), Query Frame = 1

Query:  130 SRDVLKPVDDRKVGKRKAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            +++ LKPVDDRKVGKRKA                              SAFFVFLE+FR TFK ENP VKAVSAVGKAGG+KWKS++                EYEK ++AYN
Sbjct:   13 TKEALKPVDDRKVGKRKAP---AEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYN 122

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. TrEMBL
Match: D7LTZ6_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_323737 PE=4 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.152e-17
Identity = 53/113 (46.90%), Postives = 62/113 (54.87%), Query Frame = 1

Query:  130 SRDVLKPVDDRKVGKRKAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            +++ LKPVDDRKVGKRKA                              SAFFVFLE+FR TFK ENP VKAVSAVGKAGG+KWKS++                EYEK ++AYN
Sbjct:   13 TKEALKPVDDRKVGKRKAP---AEKATKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYN 122

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. TrEMBL
Match: B9HSP8_POPTR (High mobility group family OS=Populus trichocarpa GN=HMGB910 PE=4 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.081e-17
Identity = 53/112 (47.32%), Postives = 62/112 (55.36%), Query Frame = 1

Query:  133 RDVLKPVDDRKVGKRKAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            ++VL PV+DRK+GKRKAA                             SAFFVFLEEFRK +K E+P VKAVSAVGKAGGEKWKSL+                +YEKL+ AYN
Sbjct:   15 KEVLLPVEDRKIGKRKAALKANESSKKRVKKEKITKKDPNKPKRPP-SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSAAEKAPYEAKAAKRKSDYEKLMTAYN 125

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. TrEMBL
Match: A5BN89_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023376 PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.060e-16
Identity = 52/112 (46.43%), Postives = 62/112 (55.36%), Query Frame = 1

Query:  133 RDVLKPVDDRKVGKRKAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            ++ LKPV+DR++GKRKAA                             SAFFVFLEEFRK +K E+P VKAVSAVGKAGGEKWKSL+                +YEKL+ AYN
Sbjct:   15 KEALKPVEDRRLGKRKAALKADKSTKKLAKKEKLAKKDPNKPKRPP-SAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSEADKAPYEAKAAKRKSDYEKLMAAYN 125

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. TAIR peptide
Match: AT3G51880.4 (| Symbols: HMGB1 | high mobility group B1 | chr3:19247241-19248491 REVERSE LENGTH=161)

HSP 1 Score: 92.8189 bits (229), Expect = 2.598e-19
Identity = 53/113 (46.90%), Postives = 62/113 (54.87%), Query Frame = 1

Query:  130 SRDVLKPVDDRKVGKRKAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            +++ LKPVDDRKVGKRKA                              SAFFVFLE+FR TFK ENP VKAVSAVGKAGG+KWKS++                EYEK ++AYN
Sbjct:   13 TKEALKPVDDRKVGKRKAP---AEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYN 122

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. TAIR peptide
Match: AT3G51880.3 (| Symbols: HMGB1, NFD1 | high mobility group B1 | chr3:19247241-19248491 REVERSE LENGTH=178)

HSP 1 Score: 92.8189 bits (229), Expect = 2.598e-19
Identity = 53/113 (46.90%), Postives = 62/113 (54.87%), Query Frame = 1

Query:  130 SRDVLKPVDDRKVGKRKAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            +++ LKPVDDRKVGKRKA                              SAFFVFLE+FR TFK ENP VKAVSAVGKAGG+KWKS++                EYEK ++AYN
Sbjct:   13 TKEALKPVDDRKVGKRKAP---AEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYN 122

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. TAIR peptide
Match: AT3G51880.2 (| Symbols: HMGB1, NFD1 | high mobility group B1 | chr3:19247241-19248491 REVERSE LENGTH=185)

HSP 1 Score: 92.8189 bits (229), Expect = 2.598e-19
Identity = 53/113 (46.90%), Postives = 62/113 (54.87%), Query Frame = 1

Query:  130 SRDVLKPVDDRKVGKRKAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            +++ LKPVDDRKVGKRKA                              SAFFVFLE+FR TFK ENP VKAVSAVGKAGG+KWKS++                EYEK ++AYN
Sbjct:   13 TKEALKPVDDRKVGKRKAP---AEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYN 122

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. TAIR peptide
Match: AT3G51880.1 (| Symbols: HMGB1, NFD1 | high mobility group B1 | chr3:19247241-19248491 REVERSE LENGTH=178)

HSP 1 Score: 92.8189 bits (229), Expect = 2.598e-19
Identity = 53/113 (46.90%), Postives = 62/113 (54.87%), Query Frame = 1

Query:  130 SRDVLKPVDDRKVGKRKAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            +++ LKPVDDRKVGKRKA                              SAFFVFLE+FR TFK ENP VKAVSAVGKAGG+KWKS++                EYEK ++AYN
Sbjct:   13 TKEALKPVDDRKVGKRKAP---AEKPTKRETRKEKKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYN 122

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. TAIR peptide
Match: AT1G20696.3 (| Symbols: HMGB3, NFD3, NFD03 | high mobility group B3 | chr1:7179825-7181170 FORWARD LENGTH=140)

HSP 1 Score: 72.7886 bits (177), Expect = 2.782e-13
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 1

Query:  274 SAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            SAFFVF+E+FR T+K E+P  K+V+AVGKAGGEKWKSL+               VEYEK + AYN
Sbjct:   40 SAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYN 104

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. TAIR peptide
Match: AT1G20696.2 (| Symbols: HMGB3, NFD3, NFD03 | high mobility group B3 | chr1:7179825-7181193 FORWARD LENGTH=147)

HSP 1 Score: 72.7886 bits (177), Expect = 2.782e-13
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 1

Query:  274 SAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            SAFFVF+E+FR T+K E+P  K+V+AVGKAGGEKWKSL+               VEYEK + AYN
Sbjct:   40 SAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYN 104

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. TAIR peptide
Match: AT1G20696.1 (| Symbols: HMGB3, NFD3, NFD03 | high mobility group B3 | chr1:7179825-7181174 FORWARD LENGTH=141)

HSP 1 Score: 72.7886 bits (177), Expect = 2.782e-13
Identity = 36/65 (55.38%), Postives = 44/65 (67.69%), Query Frame = 1

Query:  274 SAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            SAFFVF+E+FR T+K E+P  K+V+AVGKAGGEKWKSL+               VEYEK + AYN
Sbjct:   40 SAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYN 104

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. TAIR peptide
Match: AT1G20693.3 (| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mobility group B2 | chr1:7177282-7178487 FORWARD LENGTH=143)

HSP 1 Score: 72.0182 bits (175), Expect = 4.745e-13
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 1

Query:  274 SAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            SAFFVF+E+FR+TFK ENP  K+V+ VGKA G+KWKSL+               VEYEK + AYN
Sbjct:   43 SAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYN 107

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. TAIR peptide
Match: AT1G20693.2 (| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mobility group B2 | chr1:7177282-7178487 FORWARD LENGTH=142)

HSP 1 Score: 72.0182 bits (175), Expect = 4.745e-13
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 1

Query:  274 SAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            SAFFVF+E+FR+TFK ENP  K+V+ VGKA G+KWKSL+               VEYEK + AYN
Sbjct:   43 SAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYN 107

[Close]

BLAST of Cicer_arietinum_v1_Contig2446 vs. TAIR peptide
Match: AT1G20693.1 (| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mobility group B2 | chr1:7177282-7178487 FORWARD LENGTH=144)

HSP 1 Score: 72.0182 bits (175), Expect = 4.745e-13
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 1

Query:  274 SAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTXXXXXXXXXXXXXXXVEYEKLLNAYN 468
            SAFFVF+E+FR+TFK ENP  K+V+ VGKA G+KWKSL+               VEYEK + AYN
Sbjct:   43 SAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYN 107

The following BLAST results are available for this feature:

BLAST of Cicer_arietinum_v1_Contig2446 vs. SwissProt
BLAST of Cicer_arietinum_v1_Contig2446 vs. TrEMBL
BLAST of Cicer_arietinum_v1_Contig2446 vs. TAIR peptide

BLAST of Cicer_arietinum_v1_Contig2446 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 5


Match Name	E-value	Identity	Description
HMGL_IPONI	1.836e-11	52.31	HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1	[more]
HMGL_SOYBN	2.398e-11	53.85	HMG1/2-like protein OS=Glycine max PE=2 SV=1	[more]
MNB1B_MAIZE	6.976e-11	50.77	DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=...	[more]
HMGL_WHEAT	1.718e-9	49.23	HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1	[more]
HMGL_VICFA	2.481e-8	46.15	HMG1/2-like protein OS=Vicia faba PE=2 SV=1	[more]

BLAST of Cicer_arietinum_v1_Contig2446 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
Q1EMR5_PLAMJ	3.072e-20	52.68	HMG-protein (Fragment) OS=Plantago major GN=hmg1 P...	[more]
C6SVP1_SOYBN	2.600e-19	51.33	Putative uncharacterized protein OS=Glycine max PE...	[more]
A5BH86_VITVI	1.686e-18	47.79	Putative uncharacterized protein OS=Vitis vinifera...	[more]
C6SXC8_SOYBN	2.201e-18	50.89	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9SQ35_RICCO	1.093e-17	48.67	DNA-binding protein MNB1B, putative OS=Ricinus com...	[more]
Q3EAL6_ARATH	4.152e-17	46.90	AT3G51880 protein OS=Arabidopsis thaliana GN=AT3G5...	[more]
O49595_ARATH	4.152e-17	46.90	At3g51880/ORF13 OS=Arabidopsis thaliana GN=HMGalph...	[more]
D7LTZ6_ARALY	4.152e-17	46.90	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
B9HSP8_POPTR	7.081e-17	47.32	High mobility group family OS=Populus trichocarpa ...	[more]
A5BN89_VITVI	2.060e-16	46.43	Putative uncharacterized protein OS=Vitis vinifera...	[more]

BLAST of Cicer_arietinum_v1_Contig2446 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 10


Match Name	E-value	Identity	Description
AT3G51880.4	2.598e-19	46.90	\| Symbols: HMGB1 \| high mobility group B1 \| chr3:1...	[more]
AT3G51880.3	2.598e-19	46.90	\| Symbols: HMGB1, NFD1 \| high mobility group B1 \| ...	[more]
AT3G51880.2	2.598e-19	46.90	\| Symbols: HMGB1, NFD1 \| high mobility group B1 \| ...	[more]
AT3G51880.1	2.598e-19	46.90	\| Symbols: HMGB1, NFD1 \| high mobility group B1 \| ...	[more]
AT1G20696.3	2.782e-13	55.38	\| Symbols: HMGB3, NFD3, NFD03 \| high mobility grou...	[more]
AT1G20696.2	2.782e-13	55.38	\| Symbols: HMGB3, NFD3, NFD03 \| high mobility grou...	[more]
AT1G20696.1	2.782e-13	55.38	\| Symbols: HMGB3, NFD3, NFD03 \| high mobility grou...	[more]
AT1G20693.3	4.745e-13	53.85	\| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 \| high m...	[more]
AT1G20693.2	4.745e-13	53.85	\| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 \| high m...	[more]
AT1G20693.1	4.745e-13	53.85	\| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 \| high m...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000135	High mobility group, HMG1/HMG2, subgroup	PRINTS	PR00886	HIGHMOBLTY12	coord: 16..36 score: 2e-06coord: 89..108 score: 2e-06coord: 108..128 score: 2
IPR000910	High mobility group, HMG1/HMG2	GENE3D	1.10.30.10	no description	coord: 54..123 score: 9
IPR000910	High mobility group, HMG1/HMG2	PFAM	PF00505	HMG_box	coord: 55..124 score: 2.8
IPR000910	High mobility group, HMG1/HMG2	SMART	SM00398	no description	coord: 54..125 score: 6.1
IPR000910	High mobility group, HMG1/HMG2	PROFILE	PS50118	HMG_BOX_2	coord: 55..124 score: 19
IPR009071	High mobility group, superfamily	SUPERFAMILY	47095	HMG-box	coord: 35..128 score: 6.1
None	No IPR available	PANTHER	PTHR13711	SWI/SNF-RELATED CHROMATIN BINDING PROTEIN	coord: 51..174 score: 1.5
None	No IPR available	SEG	seg	seg	coord: 32..59 score: NAcoord: 99..113 score: NAcoord: 126..143 score: NAcoord: 147..174 score
None	No IPR available	SEG	seg	seg	coord: 9..23 score: NAcoord: 31..50 score
None	No IPR available	SEG	seg	seg	coord: 4..15 score: NAcoord: 33..53 score
None	No IPR available	SEG	seg	seg	coord: 16..39 score: NAcoord: 43..53 score
None	No IPR available	SEG	seg	seg	coord: 37..62 score
None	No IPR available	SEG	seg	seg	coord: 52..104 score
None	No IPR available	SEG	seg	seg	coord: 62..91 score

Sequences

The following sequences are available for this feature:

contig sequence

contig sequence

>Cicer_arietinum_v1_Contig2446 ID=Cicer_arietinum_v1_Contig2446; Name=Cicer_arietinum_v1_Contig2446; organism=Cicer arietinum; type=contig; length=857bp
GGGATTCTCTGCTTTCTAGTTCTTGTCTTCGGTTCTGCTTCGCTTGTTGA
AGATCCTCTCTCCGCTCTTTCCTTCATCAATTTCTAAGGAGCTTAGACGA
TGACAAAGGGAAAGGGAACAGGAAGGACTTCAAGGGACGTATTGAAACCA
GTTGATGACCGAAAGGTAGGAAAGCGAAAGGCTGCTTATAAACCGGAGAA
GAGCAGCGCACCAAAGCCTACTAAGAAGGAGAAGAAGGCCAAAAAAGATC
CCAACAAACCGAAAAGACCTCCGAGCGCTTTCTTTGTCTTCCTTGAGGAG
TTCAGAAAGACCTTTAAGGCAGAAAATCCTACTGTGAAGGCCGTATCAGC
TGTTGGAAAGGCTGGAGGAGAAAAATGGAAATCCTTGACTAAGGCCGAAA
AAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAGTTGAGTATGAAAAA
CTTCTGAATGCTTATAACAACAAGGCAAGTTCAGCGGATGATGAGGAGGA
GGAATCTGACAAATCCAAATCCGAAGTTAATAATGAAGATGAAGCAAGTG
CAGAGGATGACCACCAAGACGAGGATGATGATGATGAGGACGACGATGAT
GATGAGGAAGATGATGATTGAGATTGGTGTGTATAAATTAAGATATGATG
TTTCATTGGTGGAGGGAGGCTATTATATAGTTTGTCTCTGCATATTAGGA
TACTTTTGGATATTTGTGTTGGTTGAATATCTGTCTTGTCTTGCTGGTAT
GATATTTTGCCAGCTTCCCTCAGTTGTTAGTTATTGTACTTAAATTCTCC
TTTGTGCACTGCTGCCTCAAATGTGTTGGCTGAAGTAATATAAATTTCTT
TTTTATC

Annotated Terms

The following terms have been associated with this contig:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR000135	High mobility group, HMG1/HMG2, subgroup
IPR000910	High mobility group, HMG1/HMG2
IPR009071	HMG_box_dom

Search form

Cicer_arietinum_v1_Contig2446