HO062308

EST Overview


Name	HO062308
Unique Name	HO062308
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	710

Libraries


Library Name	Type
LIBEST_026408 Chickpea drought stressed cDNA SSH library AB1	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
KEGG analysis for Cicer arietinum unigene v1	2011-01-05
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of HO062308 vs. SwissProt
Match: XPB1_ARATH (DNA repair helicase XPB1 OS=Arabidopsis thaliana GN=XPB1 PE=2 SV=3)

HSP 1 Score: 368.622 bits (945), Expect = 1.818e-101
Identity = 187/234 (79.91%), Postives = 198/234 (84.62%), Query Frame = -2

Query:    8 NPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDVPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLSLLGKVLNAGDDAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGMVYMEY 709
            NPNKFRACEFLI +HE+ RGDKIIVFADNLFALTEYAMKLRKPMIYGATSH+ERTKIL+AFKTSKDVNT+FLSKVGDNSID+PEANVIIQISSHAGSRRQEAQRLGRILRAKGKL+DRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPP D GS L+YH  E+QLSLLGKV+NAGDD VG                            +KGMVYMEY
Sbjct:  505 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDAGSSLSYHSQEEQLSLLGKVMNAGDDLVGLEQLEEDTDGMALQKARRSMGSMSVMSGSKGMVYMEY 738

[Close]

BLAST of HO062308 vs. SwissProt
Match: XPB2_ARATH (DNA repair helicase XPB2 OS=Arabidopsis thaliana GN=XPB2 PE=2 SV=1)

HSP 1 Score: 360.533 bits (924), Expect = 4.950e-99
Identity = 179/197 (90.86%), Postives = 187/197 (94.92%), Query Frame = -2

Query:  119 NPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDVPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLSLLGKVLNAGDDAVG 709
            NPNKFRACEFLI +HE+ RGDKIIVFADNLFALTEYAMKLRKPMIYGATSH+ERTKIL+AFKTSK VNT+FLSKVGDNSID+PEANVIIQISSHAGSRRQEAQRLGRILRAKGKL+DRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPP D GS L YH  E+QLSLLGKVLNAGDD VG
Sbjct:  505 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKTVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDAGSSLGYHSQEEQLSLLGKVLNAGDDMVG 701

[Close]

BLAST of HO062308 vs. SwissProt
Match: ERCC3_CHICK (TFIIH basal transcription factor complex helicase XPB subunit OS=Gallus gallus GN=ERCC3 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.377e-63
Identity = 129/193 (66.84%), Postives = 149/193 (77.20%), Query Frame = -2

Query:  131 NPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDVPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLSLLGKVLNAGD 709
            NPNKFRAC+FLI +HER R DKIIVFADN+FAL EYA++L KP IYG T+  ER +ILQ FK +  +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK  +        EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L   +E   L++   E+Q  LL KVL A D
Sbjct:  534 NPNKFRACQFLIKFHER-RNDKIIVFADNVFALKEYAIRLGKPYIYGPTAQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EELSFSSKEEQQQLLQKVLQASD 718

[Close]

BLAST of HO062308 vs. SwissProt
Match: ERCC3_RAT (TFIIH basal transcription factor complex helicase XPB subunit OS=Rattus norvegicus GN=Ercc3 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.751e-63
Identity = 130/193 (67.36%), Postives = 148/193 (76.68%), Query Frame = -2

Query:  131 NPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDVPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLSLLGKVLNAGD 709
            NPNKFRAC+FLI +HER R DKIIVFADN+FAL EYA++L KP IYG TS  ER +ILQ FK +  +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK  +        EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L   +E   L +   E+Q  LL KVL A D
Sbjct:  537 NPNKFRACQFLIKFHER-RNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EELAFSTKEEQQQLLQKVLAATD 721

[Close]

BLAST of HO062308 vs. SwissProt
Match: ERCC3_MOUSE (TFIIH basal transcription factor complex helicase XPB subunit OS=Mus musculus GN=Ercc3 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.751e-63
Identity = 130/193 (67.36%), Postives = 148/193 (76.68%), Query Frame = -2

Query:  131 NPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDVPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLSLLGKVLNAGD 709
            NPNKFRAC+FLI +HER R DKIIVFADN+FAL EYA++L KP IYG TS  ER +ILQ FK +  +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK  +        EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L   +E   L +   E+Q  LL KVL A D
Sbjct:  538 NPNKFRACQFLIKFHER-RNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EELAFSTKEEQQQLLQKVLAATD 722

[Close]

BLAST of HO062308 vs. SwissProt
Match: ERCC3_PONAB (TFIIH basal transcription factor complex helicase XPB subunit OS=Pongo abelii GN=ERCC3 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.663e-62
Identity = 130/193 (67.36%), Postives = 148/193 (76.68%), Query Frame = -2

Query:  131 NPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDVPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLSLLGKVLNAGD 709
            NPNKFRAC+FLI +HER R DKIIVFADN+FAL EYA++L KP IYG TS  ER +ILQ FK +  +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK  +        EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L   +E   L +   E+Q  LL KVL A D
Sbjct:  537 NPNKFRACQFLIKFHER-RNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EDLAFSTKEEQQQLLQKVLAATD 721

[Close]

BLAST of HO062308 vs. SwissProt
Match: ERCC3_MACFA (TFIIH basal transcription factor complex helicase XPB subunit OS=Macaca fascicularis GN=ERCC3 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.663e-62
Identity = 130/193 (67.36%), Postives = 148/193 (76.68%), Query Frame = -2

Query:  131 NPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDVPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLSLLGKVLNAGD 709
            NPNKFRAC+FLI +HER R DKIIVFADN+FAL EYA++L KP IYG TS  ER +ILQ FK +  +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK  +        EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L   +E   L +   E+Q  LL KVL A D
Sbjct:  537 NPNKFRACQFLIKFHER-RNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EDLAFSTKEEQQQLLQKVLAATD 721

[Close]

BLAST of HO062308 vs. SwissProt
Match: ERCC3_HUMAN (TFIIH basal transcription factor complex helicase XPB subunit OS=Homo sapiens GN=ERCC3 PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.663e-62
Identity = 130/193 (67.36%), Postives = 148/193 (76.68%), Query Frame = -2

Query:  131 NPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDVPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLSLLGKVLNAGD 709
            NPNKFRAC+FLI +HER R DKIIVFADN+FAL EYA++L KP IYG TS  ER +ILQ FK +  +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK  +        EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L   +E   L +   E+Q  LL KVL A D
Sbjct:  537 NPNKFRACQFLIKFHER-RNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EDLAFSTKEEQQQLLQKVLAATD 721

[Close]

BLAST of HO062308 vs. SwissProt
Match: ERCC3_BOVIN (TFIIH basal transcription factor complex helicase XPB subunit OS=Bos taurus GN=ERCC3 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.663e-62
Identity = 130/193 (67.36%), Postives = 148/193 (76.68%), Query Frame = -2

Query:  131 NPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDVPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLSLLGKVLNAGD 709
            NPNKFRAC+FLI +HER R DKIIVFADN+FAL EYA++L KP IYG TS  ER +ILQ FK +  +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK  +        EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L   +E   L +   E+Q  LL KVL A D
Sbjct:  537 NPNKFRACQFLIKFHER-RNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EDLAFSTKEEQQQLLQKVLAATD 721

[Close]

BLAST of HO062308 vs. SwissProt
Match: ERCC3_DANRE (TFIIH basal transcription factor complex helicase XPB subunit OS=Danio rerio GN=ercc3 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.839e-62
Identity = 128/193 (66.32%), Postives = 148/193 (76.68%), Query Frame = -2

Query:  131 NPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDVPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLSLLGKVLNAGD 709
            NPNKFRAC+FLI +HER R DKIIVFADN+FAL EYA++L KP IYG TS  ER +ILQ FK +  +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK  +        EEYNA+FYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L   +E   L +   ++Q  LL KVL A D
Sbjct:  536 NPNKFRACQFLIRFHER-RNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMV------AEEYNAYFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EDLMFSTRDEQQQLLQKVLAASD 720

[Close]

BLAST of HO062308 vs. TrEMBL
Match: D7MIW1_ARALY (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_659455 PE=4 SV=1)

HSP 1 Score: 369.392 bits (947), Expect = 1.595e-100
Identity = 189/234 (80.77%), Postives = 198/234 (84.62%), Query Frame = -2

Query:    8 NPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDVPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLSLLGKVLNAGDDAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGMVYMEY 709
            NPNKFRACEFLI +HE+ RGDKIIVFADNLFALTEYAMKLRKPMIYGATSH+ERTKIL+AFKTSKDVNT+FLSKVGDNSID+PEANVIIQISSHAGSRRQEAQRLGRILRAKGKL+DRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPP D GS L+YH  E+QLSLLGKVLNAGDD VG                            AKGMVYMEY
Sbjct:  517 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDAGSSLSYHSQEEQLSLLGKVLNAGDDLVGLEQLEEDTDGMALQKARRSMGSMSLMSGAKGMVYMEY 750

[Close]

BLAST of HO062308 vs. TrEMBL
Match: D7MIW4_ARALY (DNA repair and transcription factor XPB1 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_916071 PE=4 SV=1)

HSP 1 Score: 366.696 bits (940), Expect = 1.034e-99
Identity = 188/234 (80.34%), Postives = 196/234 (83.76%), Query Frame = -2

Query:    8 NPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDVPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLSLLGKVLNAGDDAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGMVYMEY 709
            NPNKFRACEFLI +HE+ RGDKIIVFADNLFALTEYAMKLRKPMIYGATSH+ERTKIL+AFKTSKDVNT+FLSKVGDNSID+PEANVIIQISSHAGSRRQEAQRLGRILRAKGKL+DRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPP D GS L YH  E+QLSLLGKVLNAGDD VG                            AKG VYMEY
Sbjct:  505 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDAGSSLGYHSQEEQLSLLGKVLNAGDDLVGLEQLEEDTDGMALQKARRSMGSMSAMSGAKGRVYMEY 738

[Close]

BLAST of HO062308 vs. TrEMBL
Match: B9RCF1_RICCO (Rad25/xp-B DNA repair helicase, putative OS=Ricinus communis GN=RCOM_1687530 PE=4 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 1.350e-99
Identity = 188/234 (80.34%), Postives = 197/234 (84.19%), Query Frame = -2

Query:    8 NPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDVPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLSLLGKVLNAGDDAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGMVYMEY 709
            NPNKFRACEFLI +HE+ RGDKIIVFADNLFALTEYAMKLRKPMIYGATSH ERTKILQAFKTSKDVNT+FLSKVGDNSID+PEANVIIQISSHAGSRRQEAQRLGRILRAKGK QDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPP D G  L+Y+HL++QL+LL KVLNAGDDAVG                            AKGMVYMEY
Sbjct:  503 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHAERTKILQAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPLDSGPDLSYYHLDEQLALLAKVLNAGDDAVGLEQLEEDADDIALHKARRSMGSMSAMSGAKGMVYMEY 736

[Close]

BLAST of HO062308 vs. TrEMBL
Match: D7TV42_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_25.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00019392001 PE=4 SV=1)

HSP 1 Score: 363.999 bits (933), Expect = 6.701e-99
Identity = 185/234 (79.06%), Postives = 198/234 (84.62%), Query Frame = -2

Query:    8 NPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDVPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLSLLGKVLNAGDDAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGMVYMEY 709
            NPNKFRACEFLI +HE+ RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKIL+AFKT KDVNTIFLSKVGDNSID+PEANVIIQISSHAGSRRQEAQRLGRILRAKG+LQDR+AGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFK+ITSLPP D G+ L+YH L++QL+LLGKVL+AGDDAVG                            A GMVYMEY
Sbjct:  585 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILEAFKTHKDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGRLQDRLAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKIITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALQKARRSVGSMSAMSGASGMVYMEY 818

[Close]

BLAST of HO062308 vs. TrEMBL
Match: B8LKF2_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 1.397e-96
Identity = 185/234 (79.06%), Postives = 192/234 (82.05%), Query Frame = -2

Query:    8 NPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDVPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLSLLGKVLNAGDDAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGMVYMEY 709
            NPNKFRACEFLI +HE+ RGDKIIVFADNLFALTEYAMKLRKPMIYGATSH ERT+IL AFK S DVNT+FLSKVGDNSID+PEANVIIQISSHAGSRRQEAQRLGRILRAKGK QDRMAGGKEEYNAFFYSLVS DTQEMYYSTKRQQFLIDQGYSFKVITSLPP D G+ LNYH LEDQL+LL KVLNAGDDAVG                            A GMVYMEY
Sbjct:  507 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHSERTRILYAFKHSPDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSNDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDTGADLNYHTLEDQLALLTKVLNAGDDAVGLEQLEEDADDITLLKARRSVGSMSAMSGASGMVYMEY 740

[Close]

BLAST of HO062308 vs. TrEMBL
Match: C5XGX0_SORBI (Putative uncharacterized protein Sb03g031750 OS=Sorghum bicolor GN=Sb03g031750 PE=4 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 2.088e-92
Identity = 176/234 (75.21%), Postives = 189/234 (80.77%), Query Frame = -2

Query:    8 NPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDVPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLSLLGKVLNAGDDAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGMVYMEY 709
            NPNKFRACEFLI +HE+ RGDKIIVFADNLFALT YAMKLRKPMI+GATSH ERT+IL  FK S +VNTIFLSKVGDNSID+PEANVIIQISSHAGSRRQEAQRLGRILRAKGK QDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPP +EG  L+++ L++QL LL KVLNAGDD +G                            A GMVYMEY
Sbjct:  507 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTAYAMKLRKPMIFGATSHAERTRILYQFKNSPEVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPEEGPNLSFYTLDEQLELLSKVLNAGDDMIGVERLEEDSDGKALLRARRSAGSMSAFSGAGGMVYMEY 740

[Close]

BLAST of HO062308 vs. TrEMBL
Match: B9GKF1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_751297 PE=4 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 3.561e-92
Identity = 182/254 (71.65%), Postives = 192/254 (75.59%), Query Frame = -2

Query:    8 NPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDVPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQ--------------------EMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLSLLGKVLNAGDDAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGMVYMEY 709
            NPNKFRACEFLI +HE  R DKIIVFADNLFALTEYAMKL KPMIYGATSH ERTKIL AFKTS +VNT+FLSKVGDNSID+PEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQ                    EMYYSTKRQQFLIDQGYSFKVITSLPP+D G+ L+Y+ L+DQL LL KVL+AGDDAVG                            A GMVYMEY
Sbjct:  520 NPNKFRACEFLIRFHEEQRRDKIIVFADNLFALTEYAMKLHKPMIYGATSHAERTKILHAFKTSSEVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQMIDADSSWRSISYLRCFFFLEMYYSTKRQQFLIDQGYSFKVITSLPPADSGADLSYNSLDDQLGLLAKVLSAGDDAVGLEQLDEDADDIALHKARRYMGSMSVMSGANGMVYMEY 773

[Close]

BLAST of HO062308 vs. TrEMBL
Match: B9EYX5_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_03086 PE=4 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 6.716e-91
Identity = 174/234 (74.36%), Postives = 186/234 (79.49%), Query Frame = -2

Query:    8 NPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDVPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLSLLGKVLNAGDDAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGMVYMEY 709
            NPNKFRACEFLI +HE+ RGDKIIVFADNLFALT YAMKLRKPMIYG+TSHVERT+IL  FK S DVNTIFLSKVGDNSID+PEANVIIQISSHAGSRRQEAQRLGRILRAKGK QDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPP +E   L Y+ L DQL LL ++L+A DD +G                            + GMVYMEY
Sbjct:  505 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTSYAMKLRKPMIYGSTSHVERTRILHQFKNSSDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPEELPNLKYYTLNDQLELLAQLLSARDDMIGIEHLEEDSDGKALMKARRSAGSMSAFSGSGGMVYMEY 738

[Close]

BLAST of HO062308 vs. TrEMBL
Match: B8A801_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_03346 PE=4 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 1.496e-90
Identity = 174/234 (74.36%), Postives = 185/234 (79.06%), Query Frame = -2

Query:    8 NPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDVPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLSLLGKVLNAGDDAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGMVYMEY 709
            NPNKFRACEFLI +HE+ RGDKIIVFADNLFALT YAMKLRKPMIYG+TSHVERT+IL  FK S DVNTIFLSKVGDNSID+PEANVIIQISSHAGSRRQEAQRLGRILRAKGK QDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPP +E   L Y+ L DQL LL + L+A DD +G                            + GMVYMEY
Sbjct:  505 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTSYAMKLRKPMIYGSTSHVERTRILHQFKNSSDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPEELPNLKYYTLNDQLELLAQSLSARDDMIGIEHLEEDSDGKALMKARRSAGSMSAFSGSGGMVYMEY 738

[Close]

BLAST of HO062308 vs. TrEMBL
Match: A9T7C2_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_168477 PE=4 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 2.389e-88
Identity = 162/197 (82.23%), Postives = 178/197 (90.36%), Query Frame = -2

Query:  119 NPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDVPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLSLLGKVLNAGDDAVG 709
            NPNKFRACEFLI +HE  RGDKIIVF+DNLFAL EYA KLRKP IYG TSH ERT+IL AFK S  VNT+FLSKVGDNSID+PEANVIIQISSHAGSRRQEAQRLGRILRAKGK +DRMAGG EE+NAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPP+D G  L+YH L+DQ++LL KVL+AG+D++G
Sbjct:  472 NPNKFRACEFLIRFHEEQRGDKIIVFSDNLFALREYATKLRKPFIYGPTSHHERTRILYAFKHSPQVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKHKDRMAGGTEEFNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPADSGPELSYHSLDDQMNLLTKVLHAGEDSIG 668

[Close]

BLAST of HO062308 vs. TAIR peptide
Match: AT5G41370.1 (| Symbols: XPB1, ATXPB1 | homolog of xeroderma pigmentosum complementation group B 1 | chr5:16551337-16555792 FORWARD LENGTH=767)

HSP 1 Score: 368.622 bits (945), Expect = 1.845e-102
Identity = 187/234 (79.91%), Postives = 198/234 (84.62%), Query Frame = -2

Query:    8 NPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDVPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLSLLGKVLNAGDDAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGMVYMEY 709
            NPNKFRACEFLI +HE+ RGDKIIVFADNLFALTEYAMKLRKPMIYGATSH+ERTKIL+AFKTSKDVNT+FLSKVGDNSID+PEANVIIQISSHAGSRRQEAQRLGRILRAKGKL+DRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPP D GS L+YH  E+QLSLLGKV+NAGDD VG                            +KGMVYMEY
Sbjct:  505 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDAGSSLSYHSQEEQLSLLGKVMNAGDDLVGLEQLEEDTDGMALQKARRSMGSMSVMSGSKGMVYMEY 738

[Close]

BLAST of HO062308 vs. TAIR peptide
Match: AT5G41360.1 (| Symbols: XPB2, ATXPB2 | homolog of Xeroderma pigmentosum complementation group B 2 | chr5:16544574-16549121 FORWARD LENGTH=766)

HSP 1 Score: 360.533 bits (924), Expect = 5.024e-100
Identity = 179/197 (90.86%), Postives = 187/197 (94.92%), Query Frame = -2

Query:  119 NPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDVPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPSDEGSRLNYHHLEDQLSLLGKVLNAGDDAVG 709
            NPNKFRACEFLI +HE+ RGDKIIVFADNLFALTEYAMKLRKPMIYGATSH+ERTKIL+AFKTSK VNT+FLSKVGDNSID+PEANVIIQISSHAGSRRQEAQRLGRILRAKGKL+DRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPP D GS L YH  E+QLSLLGKVLNAGDD VG
Sbjct:  505 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSKTVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDAGSSLGYHSQEEQLSLLGKVLNAGDDMVG 701

The following BLAST results are available for this feature:

BLAST of HO062308 vs. SwissProt
BLAST of HO062308 vs. TrEMBL
BLAST of HO062308 vs. TAIR peptide

BLAST of HO062308 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
XPB1_ARATH	1.818e-101	79.91	DNA repair helicase XPB1 OS=Arabidopsis thaliana G...	[more]
XPB2_ARATH	4.950e-99	90.86	DNA repair helicase XPB2 OS=Arabidopsis thaliana G...	[more]
ERCC3_CHICK	4.377e-63	66.84	TFIIH basal transcription factor complex helicase ...	[more]
ERCC3_RAT	9.751e-63	67.36	TFIIH basal transcription factor complex helicase ...	[more]
ERCC3_MOUSE	9.751e-63	67.36	TFIIH basal transcription factor complex helicase ...	[more]
ERCC3_PONAB	1.663e-62	67.36	TFIIH basal transcription factor complex helicase ...	[more]
ERCC3_MACFA	1.663e-62	67.36	TFIIH basal transcription factor complex helicase ...	[more]
ERCC3_HUMAN	1.663e-62	67.36	TFIIH basal transcription factor complex helicase ...	[more]
ERCC3_BOVIN	1.663e-62	67.36	TFIIH basal transcription factor complex helicase ...	[more]
ERCC3_DANRE	4.839e-62	66.32	TFIIH basal transcription factor complex helicase ...	[more]

BLAST of HO062308 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
D7MIW1_ARALY	1.595e-100	80.77	Predicted protein OS=Arabidopsis lyrata subsp. lyr...	[more]
D7MIW4_ARALY	1.034e-99	80.34	DNA repair and transcription factor XPB1 OS=Arabid...	[more]
B9RCF1_RICCO	1.350e-99	80.34	Rad25/xp-B DNA repair helicase, putative OS=Ricinu...	[more]
D7TV42_VITVI	6.701e-99	79.06	Whole genome shotgun sequence of line PN40024, sca...	[more]
B8LKF2_PICSI	1.397e-96	79.06	Putative uncharacterized protein OS=Picea sitchens...	[more]
C5XGX0_SORBI	2.088e-92	75.21	Putative uncharacterized protein Sb03g031750 OS=So...	[more]
B9GKF1_POPTR	3.561e-92	71.65	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9EYX5_ORYSJ	6.716e-91	74.36	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B8A801_ORYSI	1.496e-90	74.36	Putative uncharacterized protein OS=Oryza sativa s...	[more]
A9T7C2_PHYPA	2.389e-88	82.23	Predicted protein OS=Physcomitrella patens subsp. ...	[more]

BLAST of HO062308 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT5G41370.1	1.845e-102	79.91	\| Symbols: XPB1, ATXPB1 \| homolog of xeroderma pig...	[more]
AT5G41360.1	5.024e-100	90.86	\| Symbols: XPB2, ATXPB2 \| homolog of Xeroderma pig...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 29..45 score
None	No IPR available	GENE3D	3.40.50.300	no description	coord: 3..112 score: 1.7
None	No IPR available	PANTHER	PTHR11274	RAD25/XP-B DNA REPAIR HELICASE	coord: 1..199 score: 2.5
None	No IPR available	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1..187 score: 1.9
IPR001161	Xeroderma pigmentosum group B protein (XP-B)	PRINTS	PR00851	XRODRMPGMNTB	coord: 1..16 score: 1.2e-61coord: 21..43 score: 1.2e-61coord: 68..86 score: 1.2e-61coord: 87..112 score: 1.2e-61coord: 124..147 score: 1.2
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 44..112 score: 6.4
IPR001650	Helicase, C-terminal	SMART	SM00490	no description	coord: 34..112 score: 3.4
IPR001650	Helicase, C-terminal	PROFILE	PS51194	HELICASE_CTER	coord: 6..172 score: 11

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>HO062308 ID=HO062308; Name=HO062308; organism=Cicer arietinum; type=EST; length=710bp
CGGGCAGGTACTCCATATAAACCATCCCTTTTGCACCTGACATTGCACTC
ATGGATGCTTGAGAACGACGAGCACTTCGAAGAGCTAATTCATCTGAGTC
TTCTTCTAGTTACTCTAATCCAACTGCATCATCACCGGCATTCAATACCT
TTCCAAGAAGAGACAATTGATCTTCGAGGTGATGATAGTTTAAACGAGAC
CCTTCATCAGATGGAGGCAAGCTTGTAATTACCTTAAAGCTGTAACCCTG
ATCAATTAAAAATTGCTGCCTCTTAGTTGAGTAATACATCTCCTGGGTAT
CAGTTGACACAAGGGAATAGAAAAATGCATTATACTCCTCTTTACCACCT
GCCATCCTATCCTGAAGCTTTCCCTTTGCCCTAAGAATACGACCCAGACG
TTGAGCTTCTTGACGCCTTGAACCAGCATGTGAAGAGATCTGAATTATGA
CATTTGCTTCAGGAACATCGATTGAGTTGTCACCAACCTTGGAAAGAAAA
ATGGTATTTACGTCTTTGCTAGTTTTGAATGCCTGTAGAATTTTTGTCCT
CTCAACATGGCTTGTAGCACCATATATCATTGGTTTGCGGAGTTTCATGG
CATACTCCGTCAGAGCAAAAAGATTATCAGCAAACACTATAATTTTATCG
CCGCGTGCCCTTTCGTGGTAATTAATGAGAAACTCACATGCTCGGAATTT
ATTTGGATTC

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0004003	ATP-dependent DNA helicase activity
GO:0005524	ATP binding
GO:0003676	nucleic acid binding
GO:0004386	helicase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006289	nucleotide-excision repair

Vocabulary: **INTERPRO**
Term	Definition
IPR001161	XPB/Ssl2
IPR001650	Helicase_C

Search form