GR400011

EST Overview
NameGR400011
Unique NameGR400011
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length456
Libraries
Library NameType
LIBEST_024783 ICC4958 Slow drought stresses root cDNA librarycdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Homology
BLAST of GR400011 vs. SwissProt
Match: FBL91_ARATH (F-box/LRR-repeat protein At5g63520 OS=Arabidopsis thaliana GN=At5g63520 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.727e-26
Identity = 65/134 (48.51%), Postives = 82/134 (61.19%), Query Frame = 1
Query:   79 SSSSARSTTKGKSSTEPN--------IGISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANVGCGFEPSXXXXXXXXXXGLNIPVIVTV 456
            S +    TTKGKS             + I+ +N+DLLHNIL RLPA +FA ASCV++ W+SVCNRI+SRPK+ SA S NP    A  EV++KVLSEPIRP F IAN+ CG              G  +P+IV+V
Sbjct:    5 SLTKKEMTTKGKSENSKKMKTDMADMVPIAAMNEDLLHNILLRLPAKSFAFASCVNRFWSSVCNRILSRPKMISAFSRNPDQLRAGEEVLDKVLSEPIRPQFVIANITCG-NMEETLTLITERVGSRVPIIVSV 137          
BLAST of GR400011 vs. TrEMBL
Match: B9IFD9_POPTR (F-box family protein OS=Populus trichocarpa GN=POPTRDRAFT_1101751 PE=4 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.189e-27
Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  106 KGKSSTEPNIGISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANV-GCGFEPSXXXXXXXXXXGLNIPVIVT 453
            K K    P    + +N+DL+ NIL RLPAL+FASA+CVSKSWN +CN+I+ +PK +SA SLNP  +VA+ EV+NKVLSEPIRP+FAIANV G G + S          G   P+IV+
Sbjct:    8 KPKEPKTPMTSFASINEDLILNILKRLPALSFASAACVSKSWNQICNQILYKPKFASAFSLNPDEKVALEEVVNKVLSEPIRPHFAIANVIGSGVDLSERLNFLATKLGFQTPIIVS 124          
BLAST of GR400011 vs. TrEMBL
Match: B9N8E8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_786289 PE=4 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.801e-26
Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 1
Query:  106 KGKSSTEPNIGISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANV-GCGFEPSXXXXXXXXXXGLNIPVIVT 453
            K K +  P  G + +N+DL  NIL R+PAL+FASA+CVSKSW+  CN+I+ +PKL+SA SLNP  +VA+ EV+NKVLSEPIRP FAIANV G G + S          G   P+IV+
Sbjct:    4 KPKEAKTPMTGFASINEDLFQNILKRIPALSFASAACVSKSWSRNCNQILYKPKLASAFSLNPVQKVALEEVVNKVLSEPIRPQFAIANVIGSGVDLSGILDFLAAKLGSKTPIIVS 120          
BLAST of GR400011 vs. TrEMBL
Match: A9PIU8_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.801e-26
Identity = 63/117 (53.85%), Postives = 80/117 (68.38%), Query Frame = 1
Query:  106 KGKSSTEPNIGISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANV-GCGFEPSXXXXXXXXXXGLNIPVIVT 453
            K K +  P  G + +N+DL  NIL R+PAL+FASA+CVSKSWN  CN+I+ +PKL+S+ SLNP  +VA+ EV+NKVLSEPIRP FAIANV G G   S          G   P+IV+
Sbjct:    8 KPKEAKTPMTGFASINEDLFQNILKRIPALSFASAACVSKSWNRNCNQILYKPKLASSFSLNPVQKVALEEVVNKVLSEPIRPQFAIANVIGSGVHLSGMLDFLAAKLGSKTPIIVS 124          
BLAST of GR400011 vs. TrEMBL
Match: D7MPP7_ARALY (F-box/LRR-repeat protein At5g63520 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_358554 PE=4 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.011e-26
Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 1
Query:   97 STTKGKSST-----EPNIGISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANVGCGFEPSXXXXXXXXXXGLNIPVIVTV 456
            +TTKGKS          + I+ +N+DLLHNIL RLPA +FA ASCV++SW+SVCNRI+SRPK+ SA S NP    A  EV++KVLSEPIRP+F IAN+ CG              G  +P+IV+V
Sbjct:   12 TTTKGKSENWKKMKTDTVPIAAMNEDLLHNILLRLPAKSFAFASCVNRSWSSVCNRILSRPKMISAFSRNPDQLRAGEEVLDKVLSEPIRPHFVIANITCG-NMEETLTLITERVGSRVPIIVSV 135          
BLAST of GR400011 vs. TrEMBL
Match: B9I3U0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1095590 PE=4 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.239e-26
Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = 1
Query:  106 KGKSSTEPNIGISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANV-GCGFEPSXXXXXXXXXXGLNIPVIVT 453
            K K    P    + +N+DL+ NI+ RLPA +FASA+CVSKSWN +CN+I+S+PK +SA SLNP  +VA+ EV+NKVLSEPIRP+FAIANV G G +            G   P+IV+
Sbjct:    4 KPKEPKMPMTSFASINEDLVQNIVKRLPASSFASAACVSKSWNQICNQILSKPKFASAFSLNPNEKVALEEVVNKVLSEPIRPHFAIANVIGSGVDLREKLDFLATKLGSQTPIIVS 120          
BLAST of GR400011 vs. TrEMBL
Match: B9HZA5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_568084 PE=4 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.792e-25
Identity = 60/107 (56.07%), Postives = 75/107 (70.09%), Query Frame = 1
Query:  136 GISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANV-GCGFEPSXXXXXXXXXXGLNIPVIVT 453
            G + +N+DL+ NIL R PA +FASA+CV KSWN  CN+I+S+PKL+SA SLNP  +VA  EV+NKVLSEPIRP FAIANV G G + S          G   P+IV+
Sbjct:   44 GFASINEDLVQNILKRTPASSFASAACVCKSWNQTCNQILSKPKLASAFSLNPDQKVASQEVVNKVLSEPIRPQFAIANVIGSGVDLSETLNFLAAKLGSKTPIIVS 150          
BLAST of GR400011 vs. TrEMBL
Match: B9RAD3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1505610 PE=4 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.201e-24
Identity = 58/104 (55.77%), Postives = 74/104 (71.15%), Query Frame = 1
Query:  136 GISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANVGCGFEPSXXXXXXXXXXGLNIPVI 447
            G SL+++D++ NIL+RLPAL+F SASCVSK WN VC RI+SRPKL+SALSLNP+L  AV+EV+ KVL +PI P+F IA +G  F             G  +PVI
Sbjct:    7 GFSLVSEDVIENILSRLPALSFVSASCVSKCWNKVCVRILSRPKLASALSLNPSLHEAVDEVLGKVLLQPIVPHFVIACIGKQFSLEITHQLLTKRFGTRVPVI 110          
BLAST of GR400011 vs. TrEMBL
Match: B9HZA4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_82499 PE=4 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.875e-24
Identity = 56/90 (62.22%), Postives = 70/90 (77.78%), Query Frame = 1
Query:  106 KGKSSTEPNIGISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANV 375
            K K    P  G + +N+DL+ NIL R PA +FASA+CVSKSWN  CN+I+S+PKL+SA SLNP  +VA+ EV++KVLSEPIRP FAIANV
Sbjct:    4 KPKEPKTPLTGFASINEDLVQNILKRTPATSFASAACVSKSWNHNCNQILSKPKLASAFSLNPDPKVALQEVVSKVLSEPIRPQFAIANV 93          
BLAST of GR400011 vs. TrEMBL
Match: D7SH00_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00008557001 PE=4 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.081e-23
Identity = 55/107 (51.40%), Postives = 74/107 (69.16%), Query Frame = 1
Query:  136 GISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANVGCGFEPSXXXXXXXXXXGLNIPVIVTV 456
            G++LL++DLL NIL+RLPAL+FA+A CVS+SW      ++SRPKL+SA+SLNP+ + AV EV++ VLS PIRP+FAIA +G  F             G   PVI +V
Sbjct:    8 GVALLSEDLLQNILSRLPALSFANAGCVSRSWRRAAGDVLSRPKLASAISLNPSFQDAVKEVLDSVLSRPIRPHFAIACIGLKFSLERTHKLITKKLGSATPVITSV 114          
BLAST of GR400011 vs. TrEMBL
Match: A5C7S4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019403 PE=4 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.081e-23
Identity = 55/107 (51.40%), Postives = 74/107 (69.16%), Query Frame = 1
Query:  136 GISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANVGCGFEPSXXXXXXXXXXGLNIPVIVTV 456
            G++LL++DLL NIL+RLPAL+FA+A CVS+SW      ++SRPKL+SA+SLNP+ + AV EV++ VLS PIRP+FAIA +G  F             G   PVI +V
Sbjct:    8 GVALLSEDLLQNILSRLPALSFANAGCVSRSWRRAAGDVLSRPKLASAISLNPSFQDAVKEVLDSVLSRPIRPHFAIACIGLKFSLERTHKLITKKLGSATPVITSV 114          
BLAST of GR400011 vs. TAIR peptide
Match: AT5G63520.1 (| Symbols: | CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr5:25426300-25429093 REVERSE LENGTH=519)

HSP 1 Score: 116.316 bits (290), Expect = 7.381e-27
Identity = 64/127 (50.39%), Postives = 80/127 (62.99%), Query Frame = 1
Query:  100 TTKGKSSTEPN--------IGISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANVGCGFEPSXXXXXXXXXXGLNIPVIVTV 456
            TTKGKS             + I+ +N+DLLHNIL RLPA +FA ASCV++ W+SVCNRI+SRPK+ SA S NP    A  EV++KVLSEPIRP F IAN+ CG              G  +P+IV+V
Sbjct:    2 TTKGKSENSKKMKTDMADMVPIAAMNEDLLHNILLRLPAKSFAFASCVNRFWSSVCNRILSRPKMISAFSRNPDQLRAGEEVLDKVLSEPIRPQFVIANITCG-NMEETLTLITERVGSRVPIIVSV 127          
The following BLAST results are available for this feature:
BLAST of GR400011 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
FBL91_ARATH4.727e-2648.51F-box/LRR-repeat protein At5g63520 OS=Arabidopsis ... [more]
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BLAST of GR400011 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B9IFD9_POPTR6.189e-2753.85F-box family protein OS=Populus trichocarpa GN=POP... [more]
B9N8E8_POPTR1.801e-2653.85Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A9PIU8_9ROSI1.801e-2653.85Putative uncharacterized protein OS=Populus tricho... [more]
D7MPP7_ARALY4.011e-2652.00F-box/LRR-repeat protein At5g63520 OS=Arabidopsis ... [more]
B9I3U0_POPTR5.239e-2652.14Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9HZA5_POPTR5.792e-2556.07Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9RAD3_RICCO2.201e-2455.77Putative uncharacterized protein OS=Ricinus commun... [more]
B9HZA4_POPTR2.875e-2462.22Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7SH00_VITVI7.081e-2351.40Whole genome shotgun sequence of line PN40024, sca... [more]
A5C7S4_VITVI7.081e-2351.40Putative uncharacterized protein OS=Vitis vinifera... [more]
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BLAST of GR400011 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G63520.17.381e-2750.39| Symbols: | CONTAINS InterPro DOMAIN/s: F-box do... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domain, cyclin-likePFAMPF00646F-boxcoord: 31..72
score: 4.3
IPR001810F-box domain, cyclin-likeSMARTSM00256no descriptioncoord: 34..74
score: 5
IPR022364F-box domain, Skp2-likeSUPERFAMILY81383F-box domaincoord: 31..66
score: 1.2
NoneNo IPR availableGENE3D1.20.1280.50no descriptioncoord: 26..66
score: 1.5
NoneNo IPR availableSEGsegsegcoord: 117..126
score

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR400011 ID=GR400011; Name=GR400011; organism=Cicer arietinum; type=EST; length=456bp
GAAACCGAAACACTGAAACTATATTCCGTCTTGTATCGGTGCAGTTGAGC
TCAAACTACAATGGCGGAGGATACACCGAGTTCATCATCGGCGAGATCTA
CCACCAAGGGAAAATCCTCAACCGAACCAAACATTGGCATTTCCTTACTC
AACGACGATCTTCTCCATAACATTCTCACCAGACTTCCTGCCCTAACGTT
CGCTTCTGCATCTTGCGTTAGCAAATCGTGGAATTCTGTTTGCAATCGCA
TCATTTCTCGTCCCAAACTTTCTTCTGCGCTTTCTCTTAACCCTACACTC
CGTGTCGCTGTGAATGAGGTTATCAACAAGGTTCTGTCTGAGCCAATTAG
ACCTTATTTTGCTATTGCAAATGTTGGTTGTGGATTCGAACCGAGCAAGA
TTCTGCGGCTTATTAAACGGAAATTGGGGTTGAATATTCCGGTTATTGTC
ACGGTG
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR022364F-box domain, Skp2-like