GR400011
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GR400011 vs. SwissProt
Match: FBL91_ARATH (F-box/LRR-repeat protein At5g63520 OS=Arabidopsis thaliana GN=At5g63520 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 4.727e-26 Identity = 65/134 (48.51%), Postives = 82/134 (61.19%), Query Frame = 1 Query: 79 SSSSARSTTKGKSSTEPN--------IGISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANVGCGFEPSXXXXXXXXXXGLNIPVIVTV 456 S + TTKGKS + I+ +N+DLLHNIL RLPA +FA ASCV++ W+SVCNRI+SRPK+ SA S NP A EV++KVLSEPIRP F IAN+ CG G +P+IV+V Sbjct: 5 SLTKKEMTTKGKSENSKKMKTDMADMVPIAAMNEDLLHNILLRLPAKSFAFASCVNRFWSSVCNRILSRPKMISAFSRNPDQLRAGEEVLDKVLSEPIRPQFVIANITCG-NMEETLTLITERVGSRVPIIVSV 137
BLAST of GR400011 vs. TrEMBL
Match: B9IFD9_POPTR (F-box family protein OS=Populus trichocarpa GN=POPTRDRAFT_1101751 PE=4 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 6.189e-27 Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 1 Query: 106 KGKSSTEPNIGISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANV-GCGFEPSXXXXXXXXXXGLNIPVIVT 453 K K P + +N+DL+ NIL RLPAL+FASA+CVSKSWN +CN+I+ +PK +SA SLNP +VA+ EV+NKVLSEPIRP+FAIANV G G + S G P+IV+ Sbjct: 8 KPKEPKTPMTSFASINEDLILNILKRLPALSFASAACVSKSWNQICNQILYKPKFASAFSLNPDEKVALEEVVNKVLSEPIRPHFAIANVIGSGVDLSERLNFLATKLGFQTPIIVS 124
BLAST of GR400011 vs. TrEMBL
Match: B9N8E8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_786289 PE=4 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 1.801e-26 Identity = 63/117 (53.85%), Postives = 81/117 (69.23%), Query Frame = 1 Query: 106 KGKSSTEPNIGISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANV-GCGFEPSXXXXXXXXXXGLNIPVIVT 453 K K + P G + +N+DL NIL R+PAL+FASA+CVSKSW+ CN+I+ +PKL+SA SLNP +VA+ EV+NKVLSEPIRP FAIANV G G + S G P+IV+ Sbjct: 4 KPKEAKTPMTGFASINEDLFQNILKRIPALSFASAACVSKSWSRNCNQILYKPKLASAFSLNPVQKVALEEVVNKVLSEPIRPQFAIANVIGSGVDLSGILDFLAAKLGSKTPIIVS 120
BLAST of GR400011 vs. TrEMBL
Match: A9PIU8_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 1.801e-26 Identity = 63/117 (53.85%), Postives = 80/117 (68.38%), Query Frame = 1 Query: 106 KGKSSTEPNIGISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANV-GCGFEPSXXXXXXXXXXGLNIPVIVT 453 K K + P G + +N+DL NIL R+PAL+FASA+CVSKSWN CN+I+ +PKL+S+ SLNP +VA+ EV+NKVLSEPIRP FAIANV G G S G P+IV+ Sbjct: 8 KPKEAKTPMTGFASINEDLFQNILKRIPALSFASAACVSKSWNRNCNQILYKPKLASSFSLNPVQKVALEEVVNKVLSEPIRPQFAIANVIGSGVHLSGMLDFLAAKLGSKTPIIVS 124
BLAST of GR400011 vs. TrEMBL
Match: D7MPP7_ARALY (F-box/LRR-repeat protein At5g63520 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_358554 PE=4 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 4.011e-26 Identity = 65/125 (52.00%), Postives = 83/125 (66.40%), Query Frame = 1 Query: 97 STTKGKSST-----EPNIGISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANVGCGFEPSXXXXXXXXXXGLNIPVIVTV 456 +TTKGKS + I+ +N+DLLHNIL RLPA +FA ASCV++SW+SVCNRI+SRPK+ SA S NP A EV++KVLSEPIRP+F IAN+ CG G +P+IV+V Sbjct: 12 TTTKGKSENWKKMKTDTVPIAAMNEDLLHNILLRLPAKSFAFASCVNRSWSSVCNRILSRPKMISAFSRNPDQLRAGEEVLDKVLSEPIRPHFVIANITCG-NMEETLTLITERVGSRVPIIVSV 135
BLAST of GR400011 vs. TrEMBL
Match: B9I3U0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1095590 PE=4 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 5.239e-26 Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = 1 Query: 106 KGKSSTEPNIGISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANV-GCGFEPSXXXXXXXXXXGLNIPVIVT 453 K K P + +N+DL+ NI+ RLPA +FASA+CVSKSWN +CN+I+S+PK +SA SLNP +VA+ EV+NKVLSEPIRP+FAIANV G G + G P+IV+ Sbjct: 4 KPKEPKMPMTSFASINEDLVQNIVKRLPASSFASAACVSKSWNQICNQILSKPKFASAFSLNPNEKVALEEVVNKVLSEPIRPHFAIANVIGSGVDLREKLDFLATKLGSQTPIIVS 120
BLAST of GR400011 vs. TrEMBL
Match: B9HZA5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_568084 PE=4 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 5.792e-25 Identity = 60/107 (56.07%), Postives = 75/107 (70.09%), Query Frame = 1 Query: 136 GISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANV-GCGFEPSXXXXXXXXXXGLNIPVIVT 453 G + +N+DL+ NIL R PA +FASA+CV KSWN CN+I+S+PKL+SA SLNP +VA EV+NKVLSEPIRP FAIANV G G + S G P+IV+ Sbjct: 44 GFASINEDLVQNILKRTPASSFASAACVCKSWNQTCNQILSKPKLASAFSLNPDQKVASQEVVNKVLSEPIRPQFAIANVIGSGVDLSETLNFLAAKLGSKTPIIVS 150
BLAST of GR400011 vs. TrEMBL
Match: B9RAD3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1505610 PE=4 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 2.201e-24 Identity = 58/104 (55.77%), Postives = 74/104 (71.15%), Query Frame = 1 Query: 136 GISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANVGCGFEPSXXXXXXXXXXGLNIPVI 447 G SL+++D++ NIL+RLPAL+F SASCVSK WN VC RI+SRPKL+SALSLNP+L AV+EV+ KVL +PI P+F IA +G F G +PVI Sbjct: 7 GFSLVSEDVIENILSRLPALSFVSASCVSKCWNKVCVRILSRPKLASALSLNPSLHEAVDEVLGKVLLQPIVPHFVIACIGKQFSLEITHQLLTKRFGTRVPVI 110
BLAST of GR400011 vs. TrEMBL
Match: B9HZA4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_82499 PE=4 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 2.875e-24 Identity = 56/90 (62.22%), Postives = 70/90 (77.78%), Query Frame = 1 Query: 106 KGKSSTEPNIGISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANV 375 K K P G + +N+DL+ NIL R PA +FASA+CVSKSWN CN+I+S+PKL+SA SLNP +VA+ EV++KVLSEPIRP FAIANV Sbjct: 4 KPKEPKTPLTGFASINEDLVQNILKRTPATSFASAACVSKSWNHNCNQILSKPKLASAFSLNPDPKVALQEVVSKVLSEPIRPQFAIANV 93
BLAST of GR400011 vs. TrEMBL
Match: D7SH00_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00008557001 PE=4 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 7.081e-23 Identity = 55/107 (51.40%), Postives = 74/107 (69.16%), Query Frame = 1 Query: 136 GISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANVGCGFEPSXXXXXXXXXXGLNIPVIVTV 456 G++LL++DLL NIL+RLPAL+FA+A CVS+SW ++SRPKL+SA+SLNP+ + AV EV++ VLS PIRP+FAIA +G F G PVI +V Sbjct: 8 GVALLSEDLLQNILSRLPALSFANAGCVSRSWRRAAGDVLSRPKLASAISLNPSFQDAVKEVLDSVLSRPIRPHFAIACIGLKFSLERTHKLITKKLGSATPVITSV 114
BLAST of GR400011 vs. TrEMBL
Match: A5C7S4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019403 PE=4 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 7.081e-23 Identity = 55/107 (51.40%), Postives = 74/107 (69.16%), Query Frame = 1 Query: 136 GISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANVGCGFEPSXXXXXXXXXXGLNIPVIVTV 456 G++LL++DLL NIL+RLPAL+FA+A CVS+SW ++SRPKL+SA+SLNP+ + AV EV++ VLS PIRP+FAIA +G F G PVI +V Sbjct: 8 GVALLSEDLLQNILSRLPALSFANAGCVSRSWRRAAGDVLSRPKLASAISLNPSFQDAVKEVLDSVLSRPIRPHFAIACIGLKFSLERTHKLITKKLGSATPVITSV 114
BLAST of GR400011 vs. TAIR peptide
Match: AT5G63520.1 (| Symbols: | CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr5:25426300-25429093 REVERSE LENGTH=519) HSP 1 Score: 116.316 bits (290), Expect = 7.381e-27 Identity = 64/127 (50.39%), Postives = 80/127 (62.99%), Query Frame = 1 Query: 100 TTKGKSSTEPN--------IGISLLNDDLLHNILTRLPALTFASASCVSKSWNSVCNRIISRPKLSSALSLNPTLRVAVNEVINKVLSEPIRPYFAIANVGCGFEPSXXXXXXXXXXGLNIPVIVTV 456 TTKGKS + I+ +N+DLLHNIL RLPA +FA ASCV++ W+SVCNRI+SRPK+ SA S NP A EV++KVLSEPIRP F IAN+ CG G +P+IV+V Sbjct: 2 TTKGKSENSKKMKTDMADMVPIAAMNEDLLHNILLRLPAKSFAFASCVNRFWSSVCNRILSRPKMISAFSRNPDQLRAGEEVLDKVLSEPIRPQFVIANITCG-NMEETLTLITERVGSRVPIIVSV 127 The following BLAST results are available for this feature:
BLAST of GR400011 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot) Total hits: 1
BLAST of GR400011 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl) Total hits: 10
BLAST of GR400011 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GR400011 ID=GR400011; Name=GR400011; organism=Cicer arietinum; type=EST; length=456bpback to top |