HO062881

EST Overview


Name	HO062881
Unique Name	HO062881
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	396

Libraries


Library Name	Type
LIBEST_026409 Chickpea drought stressed cDNA SSH library AB2	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

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BLAST of HO062881 vs. SwissProt
Match: CHSY_CATRO (Chalcone synthase OS=Catharanthus roseus GN=CHS PE=2 SV=1)

HSP 1 Score: 42.3578 bits (98), Expect = 8.532e-7
Identity = 24/53 (45.28%), Postives = 27/53 (50.94%), Query Frame = -3

Query:    2 PWNILGSNSIFWSGPSGGPTNFDQGKEKFTLEAGKXXPTGEVLSK*GIMSRGC 160
            P  I   NSIFW    GGP   DQ +EK  L+  K   T  VLS+ G MS  C
Sbjct:  289 PLGISDWNSIFWIAHPGGPAILDQVEEKLGLKPEKLRATRHVLSEYGNMSSAC 341

HSP 2 Score: 29.6462 bits (65), Expect = 8.532e-7
Identity = 31/78 (39.74%), Postives = 34/78 (43.59%), Query Frame = -2

Query:  162 GRGARAWVGGLIPIPERGEPHFWGGVGRPQPNCPRRGRGCFGGSPLGKAGPPFPFLKRSSGGCSKRNMKKGLDEKFPP 395
            G GA A + G  PIPE   P F   V   Q   P    G   G  L + G  F  LK   G  SK N+ K LDE F P
Sbjct:  216 GDGAAAIIVGSDPIPEIERPLF-ELVSAAQTLLPD-SHGAIDGH-LREVGLTFHLLKDVPGLISK-NIGKALDEAFQP 289

The following BLAST results are available for this feature:

BLAST of HO062881 vs. SwissProt

BLAST of HO062881 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
CHSY_CATRO	8.532e-7	45.28	Chalcone synthase OS=Catharanthus roseus GN=CHS PE...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 52..67 score
None	No IPR available	SEG	seg	seg	coord: 39..49 score
None	No IPR available	SEG	seg	seg	coord: 12..23 score: NAcoord: 29..39 score
None	No IPR available	SEG	seg	seg	coord: 16..26 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>HO062881 ID=HO062881; Name=HO062881; organism=Cicer arietinum; type=EST; length=396bp
CACACCCCCTTGACATAATTCCCTATTTACTTAACACTTCCCCTGTTGGC
CNCCNCTTTCCGGCTTCAAGGGTAAATTTTTCCTTTCCTTGATCAAAATT
GGTGGGCCCCCCGGATGGGCCACTCCAAAAAATTGAATTGGAACCCAATA
TGTTCCAAGGGGGGGGGAAACTTTTCATCCAAACCTTTTTTCATGTTTCT
TTTAGAACACCCCCCCGAACTTCTTTTTAAAAAGGGGAAAGGGGGTCCCG
CCTTCCCCAAAGGGGACCCCCCAAAACACCCTCTCCCTCTTCGGGGACAA
TTGGGTTGGGGGCGCCCAACCCCCCCCCAAAAATGGGGTTCCCCCCTTTC
CGGGATTGGGATCAATCCCCCAACCCAGGCGCGGGCTCCTCTTCCC

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