HO062259

EST Overview
NameHO062259
Unique NameHO062259
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length420
Libraries
Library NameType
LIBEST_026408 Chickpea drought stressed cDNA SSH library AB1cdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Homology
BLAST of HO062259 vs. TrEMBL
Match: B9RNU3_RICCO (RNA binding protein, putative OS=Ricinus communis GN=RCOM_0920760 PE=4 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.046e-31
Identity = 69/90 (76.67%), Postives = 70/90 (77.78%), Query Frame = 2
Query:  137 MSSFSITRKKTPFQKHXXXXXXXXXXXXXXXXXLYAEFVESFQGDNAPGSKTFVRGGTINPNDKLKDDSEGEKSKDGVSGPKKGSRYAPA 406
            MSSFSITRKKTPFQKH                 LYAEFVESFQGDNAPGSKTFVRGGTINPNDKLK DSEGEKSKDGVS PKKGSRY P+
Sbjct:    1 MSSFSITRKKTPFQKHREEEEAKKKREDDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNDKLKTDSEGEKSKDGVSVPKKGSRYVPS 90          
BLAST of HO062259 vs. TrEMBL
Match: B9HB72_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_819630 PE=4 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.497e-30
Identity = 67/90 (74.44%), Postives = 70/90 (77.78%), Query Frame = 2
Query:  137 MSSFSITRKKTPFQKHXXXXXXXXXXXXXXXXXLYAEFVESFQGDNAPGSKTFVRGGTINPNDKLKDDSEGEKSKDGVSGPKKGSRYAPA 406
            MSSFSITRKKTPFQKH                 LYAEFVESFQGDNAPGSKTFVRGGTINPN+KLK D+EGEKSKDGVS PKKGSRY P+
Sbjct:    1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNEKLKSDAEGEKSKDGVSVPKKGSRYVPS 90          
BLAST of HO062259 vs. TrEMBL
Match: B9IL77_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_825788 PE=4 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.018e-29
Identity = 67/90 (74.44%), Postives = 70/90 (77.78%), Query Frame = 2
Query:  137 MSSFSITRKKTPFQKHXXXXXXXXXXXXXXXXXLYAEFVESFQGDNAPGSKTFVRGGTINPNDKLKDDSEGEKSKDGVSGPKKGSRYAPA 406
            MSSFSITRKKTPFQKH                 LYAEFVESFQGDNAPGSKTFVRGGTINPN+KLK DS+GEKSKDGVS PKKGSRY P+
Sbjct:    1 MSSFSITRKKTPFQKHREEEEARKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNEKLKIDSKGEKSKDGVSVPKKGSRYVPS 90          
BLAST of HO062259 vs. TrEMBL
Match: D7SV56_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00035985001 PE=4 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.960e-29
Identity = 65/90 (72.22%), Postives = 70/90 (77.78%), Query Frame = 2
Query:  137 MSSFSITRKKTPFQKHXXXXXXXXXXXXXXXXXLYAEFVESFQGDNAPGSKTFVRGGTINPNDKLKDDSEGEKSKDGVSGPKKGSRYAPA 406
            MSSFSITRKKTPFQKH                 LYAEFVESFQGDNAPGSKTFVRGGTINPN+++K +SEGEKSKDGVS PKKGSRY P+
Sbjct:    1 MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDNAPGSKTFVRGGTINPNERVKTESEGEKSKDGVSVPKKGSRYVPS 90          
BLAST of HO062259 vs. TrEMBL
Match: Q9C5J3_ARATH (Putative uncharacterized protein At5g25060 OS=Arabidopsis thaliana GN=At5g25060 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.859e-23
Identity = 61/90 (67.78%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  137 MSSFSITRKKTPFQKHXXXXXXXXXXXXXXXXXLYAEFVESFQGDNAPGSKTFVRGGTINPNDKLKDDSEGEKSKDGVSGPKKGSRYAPA 406
            MSSFSITRKKTPFQKH                 LY EFVESFQGDNA  +KTFVRGGTINP DK K DSEGEKSKDG S  KKGSRY P+
Sbjct:    1 MSSFSITRKKTPFQKHREEEEARKKKAEDETARLYQEFVESFQGDNAT-TKTFVRGGTINPGDKPKVDSEGEKSKDGGSVSKKGSRYVPS 89          
BLAST of HO062259 vs. TrEMBL
Match: D7M3T9_ARALY (RNA recognition motif-containing protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_910548 PE=4 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.859e-23
Identity = 61/90 (67.78%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  137 MSSFSITRKKTPFQKHXXXXXXXXXXXXXXXXXLYAEFVESFQGDNAPGSKTFVRGGTINPNDKLKDDSEGEKSKDGVSGPKKGSRYAPA 406
            MSSFSITRKKTPFQKH                 LY EFVESFQGDNA  +KTFVRGGTINP DK K DSEGEKSKDG S  KKGSRY P+
Sbjct:    1 MSSFSITRKKTPFQKHREEEEARKKKAEDETARLYQEFVESFQGDNAT-TKTFVRGGTINPGDKPKVDSEGEKSKDGGSVSKKGSRYVPS 89          
BLAST of HO062259 vs. TrEMBL
Match: A5BQS1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025939 PE=4 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.979e-22
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = 2
Query:  236 LYAEFVESFQGDNAPGSKTFVRGGTINPNDKLKDDSEGEKSKDGVSGPKKGSRYAPA 406
            LYAEFVESFQGDNAPGSKTFVRGGTINPN++LK +SEGEKSKDGVS PKKGSRY P+
Sbjct:  152 LYAEFVESFQGDNAPGSKTFVRGGTINPNERLKTESEGEKSKDGVSVPKKGSRYVPS 208          
BLAST of HO062259 vs. TrEMBL
Match: C5XWU9_SORBI (Putative uncharacterized protein Sb04g005430 OS=Sorghum bicolor GN=Sb04g005430 PE=4 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.874e-16
Identity = 46/85 (54.12%), Postives = 56/85 (65.88%), Query Frame = 2
Query:  152 ITRKKTPFQKHXXXXXXXXXXXXXXXXXLYAEFVESFQGDNAPGSKTFVRGGTINPNDKLKDDSEGEKSKDGVSGPKKGSRYAPA 406
            ++ KK P+ KH                 +YAEFVESF+GD++ G+K FVRGG I+PN KLK DSEG KSKDG S PKKGSRY P+
Sbjct:    1 MSSKKVPYHKHREAEEARKKREEDEAARVYAEFVESFKGDSSSGAK-FVRGGVIDPNAKLKIDSEGGKSKDGGSVPKKGSRYVPS 84          
BLAST of HO062259 vs. TrEMBL
Match: B8AIW7_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_06097 PE=4 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.362e-16
Identity = 47/98 (47.96%), Postives = 59/98 (60.20%), Query Frame = 2
Query:  113 KGFFIDAKMSSFSITRKKTPFQKHXXXXXXXXXXXXXXXXXLYAEFVESFQGDNAPGSKTFVRGGTINPNDKLKDDSEGEKSKDGVSGPKKGSRYAPA 406
            +G  + A  +   ++ KK PF +H                 +Y EFVESF+GD+  GSK FVRGG I+PN KL+ DSEG KSKDG S PKKGSRY P+
Sbjct:   15 RGCSLWAGKARIRMSSKKVPFHRHKENEEARKKREQDEAARVYEEFVESFKGDSTSGSK-FVRGGVIDPNAKLRIDSEGGKSKDGGSVPKKGSRYVPS 111          
BLAST of HO062259 vs. TrEMBL
Match: Q6ETK6_ORYSJ (Putative U2-associated SR140 protein OS=Oryza sativa subsp. japonica GN=P0544B02.29-2 PE=4 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.426e-15
Identity = 45/85 (52.94%), Postives = 54/85 (63.53%), Query Frame = 2
Query:  152 ITRKKTPFQKHXXXXXXXXXXXXXXXXXLYAEFVESFQGDNAPGSKTFVRGGTINPNDKLKDDSEGEKSKDGVSGPKKGSRYAPA 406
            ++ KK PF +H                 +Y EFVESF+GD+  GSK FVRGG I+PN KL+ DSEG KSKDG S PKKGSRY P+
Sbjct:    1 MSSKKVPFHRHKENEEARKKREQDEAARVYEEFVESFKGDSTSGSK-FVRGGVIDPNAKLRIDSEGGKSKDGGSVPKKGSRYVPS 84          
BLAST of HO062259 vs. TAIR peptide
Match: AT5G25060.1 (| Symbols: | RNA recognition motif (RRM)-containing protein | chr5:8634219-8639984 REVERSE LENGTH=946)

HSP 1 Score: 112.079 bits (279), Expect = 1.122e-25
Identity = 61/90 (67.78%), Postives = 63/90 (70.00%), Query Frame = 2
Query:  137 MSSFSITRKKTPFQKHXXXXXXXXXXXXXXXXXLYAEFVESFQGDNAPGSKTFVRGGTINPNDKLKDDSEGEKSKDGVSGPKKGSRYAPA 406
            MSSFSITRKKTPFQKH                 LY EFVESFQGDNA  +KTFVRGGTINP DK K DSEGEKSKDG S  KKGSRY P+
Sbjct:    1 MSSFSITRKKTPFQKHREEEEARKKKAEDETARLYQEFVESFQGDNAT-TKTFVRGGTINPGDKPKVDSEGEKSKDGGSVSKKGSRYVPS 89          
BLAST of HO062259 vs. TAIR peptide
Match: AT5G10800.1 (| Symbols: | RNA recognition motif (RRM)-containing protein | chr5:3412898-3418382 REVERSE LENGTH=947)

HSP 1 Score: 49.6766 bits (117), Expect = 7.286e-10
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = 2
Query:  308 TINPND-KLKDDSEGEKSKDGVSGPKKGSRYAPA 406
            TINPND KLK DS+GEKS+DG S  KKGSRY P+
Sbjct:   60 TINPNDNKLKPDSQGEKSRDGDSISKKGSRYVPS 93          

HSP 2 Score: 29.6462 bits (65), Expect = 7.286e-10
Identity = 16/46 (34.78%), Postives = 25/46 (54.35%), Query Frame = 3
Query:  159 GKRRHFKSIEKXXXXXXXELKMRLLACMPNL*SRFKGITLLGRRLL 296
            G++   ++ EK       E +M+ L C+ +  +RFKGI L  R LL
Sbjct:   12 GRKHRSRNTEKKKKPRRRERRMKQLVCIKSPWNRFKGIMLQLRLLL 57          
The following BLAST results are available for this feature:
BLAST of HO062259 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B9RNU3_RICCO7.046e-3176.67RNA binding protein, putative OS=Ricinus communis ... [more]
B9HB72_POPTR3.497e-3074.44Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9IL77_POPTR1.018e-2974.44Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7SV56_VITVI2.960e-2972.22Whole genome shotgun sequence of line PN40024, sca... [more]
Q9C5J3_ARATH1.859e-2367.78Putative uncharacterized protein At5g25060 OS=Arab... [more]
D7M3T9_ARALY1.859e-2367.78RNA recognition motif-containing protein OS=Arabid... [more]
A5BQS1_VITVI5.979e-2287.72Putative uncharacterized protein OS=Vitis vinifera... [more]
C5XWU9_SORBI2.874e-1654.12Putative uncharacterized protein Sb04g005430 OS=So... [more]
B8AIW7_ORYSI8.362e-1647.96Putative uncharacterized protein OS=Oryza sativa s... [more]
Q6ETK6_ORYSJ1.426e-1552.94Putative U2-associated SR140 protein OS=Oryza sati... [more]
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BLAST of HO062259 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G25060.11.122e-2567.78| Symbols: | RNA recognition motif (RRM)-containi... [more]
AT5G10800.17.286e-1073.53| Symbols: | RNA recognition motif (RRM)-containi... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR23140RNA PROCESSING PROTEIN LD23810Pcoord: 53..124
score: 9.1
NoneNo IPR availableSEGsegsegcoord: 53..69
score
NoneNo IPR availableSEGsegsegcoord: 63..81
score
NoneNo IPR availableSEGsegsegcoord: 33..42
score

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>HO062259 ID=HO062259; Name=HO062259; organism=Cicer arietinum; type=EST; length=420bp
GTGAGTCCTACCAGCCAGCCCTCGATAGATACTCAGACGACTGTTACTCC
TCCGTGCGCATCCTTCCATTCCTTCTCTTCTTACTACTCACTCACCACCA
TCAATTCAGGTTAAGGGTTTCTTTATTGATGCAAAGATGAGTTCGTTCTC
CATTACGCGGAAAAAGACGCCATTTCAAAAGCATAGAGAAGAGGAGGAGG
CGAAGAAGAAGAGAGCTGAAGATGAGACTGCTCGCTTGTATGCCGAATTT
GTAGAGTCGTTTCAAGGGGATAACGCTCCTGGGTCGAAGACTTTTGTTCG
AGGAGGAACAATTAATCCCAATGATAAATTGAAAGACGACTCTGAGGGTG
AAAAGTCCAAAGATGGGGTATCTGGTCCAAAGAAGGGAAGTAGGTATGCA
CCTGCCCGGGCGGCCGCTCG
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