GR420678

EST Overview


Name	GR420678
Unique Name	GR420678
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	537

Libraries


Library Name	Type
LIBEST_024786 JG11 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR420678 vs. SwissProt
Match: RS13_SOYBN (40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.861e-18
Identity = 55/83 (66.27%), Postives = 58/83 (69.88%), Query Frame = -3

Query:  242 LCILKAHGLAPEMYHFQRILIKKAVFIRKHFERNRKDKDFQVDFCGEQVRIHRFARYYKKT---TPVWKRSSYESTTASTLVA 481
            L ILKAHGLAPE+      LIKKAV IRKH ERNRKDKD +      + RIHR ARYYKKT    PVWK   YESTTASTLVA
Sbjct:   72 LRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK---YESTTASTLVA 151

[Close]

BLAST of GR420678 vs. SwissProt
Match: RS132_ARATH (40S ribosomal protein S13-2 OS=Arabidopsis thaliana GN=RPS13B PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.861e-18
Identity = 55/83 (66.27%), Postives = 58/83 (69.88%), Query Frame = -3

Query:  242 LCILKAHGLAPEMYHFQRILIKKAVFIRKHFERNRKDKDFQVDFCGEQVRIHRFARYYKKT---TPVWKRSSYESTTASTLVA 481
            L ILKAHGLAPE+      LIKKAV IRKH ERNRKDKD +      + RIHR ARYYKKT    PVWK   YESTTASTLVA
Sbjct:   72 LRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK---YESTTASTLVA 151

[Close]

BLAST of GR420678 vs. SwissProt
Match: RS131_ARATH (40S ribosomal protein S13-1 OS=Arabidopsis thaliana GN=RPS13A PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.861e-18
Identity = 55/83 (66.27%), Postives = 58/83 (69.88%), Query Frame = -3

Query:  242 LCILKAHGLAPEMYHFQRILIKKAVFIRKHFERNRKDKDFQVDFCGEQVRIHRFARYYKKT---TPVWKRSSYESTTASTLVA 481
            L ILKAHGLAPE+      LIKKAV IRKH ERNRKDKD +      + RIHR ARYYKKT    PVWK   YESTTASTLVA
Sbjct:   72 LRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK---YESTTASTLVA 151

[Close]

BLAST of GR420678 vs. SwissProt
Match: RS13_MAIZE (40S ribosomal protein S13 OS=Zea mays GN=RPS13 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.415e-18
Identity = 53/83 (63.86%), Postives = 57/83 (68.67%), Query Frame = -3

Query:  242 LCILKAHGLAPEMYHFQRILIKKAVFIRKHFERNRKDKDFQVDFCGEQVRIHRFARYYKKT---TPVWKRSSYESTTASTLVA 481
            L ILKAHGLAPE+      LIKKAV IRKH ERNRKDKD +      + RIHR ARYYK+T    P WK   YESTTASTLVA
Sbjct:   72 LRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWK---YESTTASTLVA 151

[Close]

BLAST of GR420678 vs. SwissProt
Match: RS132_ORYSJ (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.415e-18
Identity = 53/83 (63.86%), Postives = 57/83 (68.67%), Query Frame = -3

Query:  242 LCILKAHGLAPEMYHFQRILIKKAVFIRKHFERNRKDKDFQVDFCGEQVRIHRFARYYKKT---TPVWKRSSYESTTASTLVA 481
            L ILKAHGLAPE+      LIKKAV IRKH ERNRKDKD +      + RIHR ARYYK+T    P WK   YESTTASTLVA
Sbjct:   72 LRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWK---YESTTASTLVA 151

[Close]

BLAST of GR420678 vs. SwissProt
Match: RS131_ORYSJ (40S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica GN=Os08g0117200 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 5.415e-18
Identity = 53/83 (63.86%), Postives = 57/83 (68.67%), Query Frame = -3

Query:  242 LCILKAHGLAPEMYHFQRILIKKAVFIRKHFERNRKDKDFQVDFCGEQVRIHRFARYYKKT---TPVWKRSSYESTTASTLVA 481
            L ILKAHGLAPE+      LIKKAV IRKH ERNRKDKD +      + RIHR ARYYK+T    P WK   YESTTASTLVA
Sbjct:   72 LRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWK---YESTTASTLVA 151

[Close]

BLAST of GR420678 vs. SwissProt
Match: RS13_PEA (40S ribosomal protein S13 OS=Pisum sativum GN=RPS13 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.058e-17
Identity = 54/83 (65.06%), Postives = 57/83 (68.67%), Query Frame = -3

Query:  242 LCILKAHGLAPEMYHFQRILIKKAVFIRKHFERNRKDKDFQVDFCGEQVRIHRFARYYKKT---TPVWKRSSYESTTASTLVA 481
            L ILKAHGLAPE+      LIKKAV IRKH ER RKDKD +      + RIHR ARYYKKT    PVWK   YESTTASTLVA
Sbjct:   72 LRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK---YESTTASTLVA 151

[Close]

BLAST of GR420678 vs. SwissProt
Match: RS13_SCHPO (40S ribosomal protein S13 OS=Schizosaccharomyces pombe GN=rps13 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 5.604e-15
Identity = 49/87 (56.32%), Postives = 57/87 (65.52%), Query Frame = -3

Query:  242 GQELC-ILKAHGLAPEMYHFQRILIKKAVFIRKHFERNRKDKDFQVDFCGEQVRIHRFARYYKKT---TPVWKRSSYESTTASTLVA 490
            GQ++  ILKA+GLAPE+      LIKKAV +RKH ERNRKDKD +      + RIHR ARYY+K     P WK   YES TAS LVA
Sbjct:   68 GQKIMRILKANGLAPELPEDLYNLIKKAVSVRKHLERNRKDKDSKFRLILIESRIHRLARYYRKVGALPPTWK---YESATASALVA 151

[Close]

BLAST of GR420678 vs. SwissProt
Match: RS13_LUMRU (40S ribosomal protein S13 OS=Lumbricus rubellus GN=RPS13 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.248e-14
Identity = 52/95 (54.74%), Postives = 57/95 (60.00%), Query Frame = -3

Query:  242 TYHWKQNRLGQELCILKAHGLAPEMYHFQRILIKKAVFIRKHFERNRKDKDFQVDFCGEQVRIHRFARYYKK---TTPVWKRSSYESTTASTLVA 517
            T H   N++   L ILKA GLAP +      LIKKAV IRKH ERNRKDKD +      + RIHR ARYYK      PVWK   YES TAS LVA
Sbjct:   63 TRHVAGNKI---LRILKAKGLAPTIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKTRKVLPPVWK---YESATASALVA 151

[Close]

BLAST of GR420678 vs. SwissProt
Match: RS13_CANMA (40S ribosomal protein S13 OS=Candida maltosa GN=RPS13 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.632e-14
Identity = 46/83 (55.42%), Postives = 54/83 (65.06%), Query Frame = -3

Query:  242 LCILKAHGLAPEMYHFQRILIKKAVFIRKHFERNRKDKDFQVDFCGEQVRIHRFARYYKKTT---PVWKRSSYESTTASTLVA 481
            L ILK++GLAPE+      LIKKAV +RKH ERNRKDKD +      + RIHR ARYY+  +   P WK   YES TAS LVA
Sbjct:   72 LRILKSNGLAPELPEDLYFLIKKAVAVRKHLERNRKDKDSKFRLILIESRIHRLARYYRTVSVLPPNWK---YESATASALVA 151

[Close]

BLAST of GR420678 vs. TrEMBL
Match: B9IBY8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_663801 PE=4 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.436e-17
Identity = 56/85 (65.88%), Postives = 59/85 (69.41%), Query Frame = -3

Query:  242 QELCILKAHGLAPEMYHFQRILIKKAVFIRKHFERNRKDKDFQVDFCGEQVRIHRFARYYKKT---TPVWKRSSYESTTASTLVA 487
            Q L ILKAHGLAPE+      LIKKAV IRKH ERNRKDKD +      + RIHR ARYYKKT    PVWK   YESTTASTLVA
Sbjct:   70 QILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK---YESTTASTLVA 151

[Close]

BLAST of GR420678 vs. TrEMBL
Match: Q9MAV9_PANGI (Cytoplasmic ribosomal protein S13 OS=Panax ginseng PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.449e-17
Identity = 55/83 (66.27%), Postives = 58/83 (69.88%), Query Frame = -3

Query:  242 LCILKAHGLAPEMYHFQRILIKKAVFIRKHFERNRKDKDFQVDFCGEQVRIHRFARYYKKT---TPVWKRSSYESTTASTLVA 481
            L ILKAHGLAPE+      LIKKAV IRKH ERNRKDKD +      + RIHR ARYYKKT    PVWK   YESTTASTLVA
Sbjct:   72 LRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK---YESTTASTLVA 151

[Close]

BLAST of GR420678 vs. TrEMBL
Match: Q3SC82_SOLLC (Cytoplasmic ribosomal protein S13 OS=Solanum lycopersicum GN=ACI39 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.449e-17
Identity = 55/83 (66.27%), Postives = 58/83 (69.88%), Query Frame = -3

Query:  242 LCILKAHGLAPEMYHFQRILIKKAVFIRKHFERNRKDKDFQVDFCGEQVRIHRFARYYKKT---TPVWKRSSYESTTASTLVA 481
            L ILKAHGLAPE+      LIKKAV IRKH ERNRKDKD +      + RIHR ARYYKKT    PVWK   YESTTASTLVA
Sbjct:   72 LRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK---YESTTASTLVA 151

[Close]

BLAST of GR420678 vs. TrEMBL
Match: Q2V995_SOLTU (Cytoplasmic ribosomal protein S13-like OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.449e-17
Identity = 55/83 (66.27%), Postives = 58/83 (69.88%), Query Frame = -3

Query:  242 LCILKAHGLAPEMYHFQRILIKKAVFIRKHFERNRKDKDFQVDFCGEQVRIHRFARYYKKT---TPVWKRSSYESTTASTLVA 481
            L ILKAHGLAPE+      LIKKAV IRKH ERNRKDKD +      + RIHR ARYYKKT    PVWK   YESTTASTLVA
Sbjct:   72 LRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK---YESTTASTLVA 151

[Close]

BLAST of GR420678 vs. TrEMBL
Match: D7M5S8_ARALY (ATRPS13A OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_490559 PE=4 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.449e-17
Identity = 55/83 (66.27%), Postives = 58/83 (69.88%), Query Frame = -3

Query:  242 LCILKAHGLAPEMYHFQRILIKKAVFIRKHFERNRKDKDFQVDFCGEQVRIHRFARYYKKT---TPVWKRSSYESTTASTLVA 481
            L ILKAHGLAPE+      LIKKAV IRKH ERNRKDKD +      + RIHR ARYYKKT    PVWK   YESTTASTLVA
Sbjct:   72 LRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK---YESTTASTLVA 151

[Close]

BLAST of GR420678 vs. TrEMBL
Match: D7LRU2_ARALY (40S ribosomal protein S13 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_907607 PE=4 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.449e-17
Identity = 55/83 (66.27%), Postives = 58/83 (69.88%), Query Frame = -3

Query:  242 LCILKAHGLAPEMYHFQRILIKKAVFIRKHFERNRKDKDFQVDFCGEQVRIHRFARYYKKT---TPVWKRSSYESTTASTLVA 481
            L ILKAHGLAPE+      LIKKAV IRKH ERNRKDKD +      + RIHR ARYYKKT    PVWK   YESTTASTLVA
Sbjct:   72 LRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK---YESTTASTLVA 151

[Close]

BLAST of GR420678 vs. TrEMBL
Match: C6T9Q3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.449e-17
Identity = 55/83 (66.27%), Postives = 58/83 (69.88%), Query Frame = -3

Query:  242 LCILKAHGLAPEMYHFQRILIKKAVFIRKHFERNRKDKDFQVDFCGEQVRIHRFARYYKKT---TPVWKRSSYESTTASTLVA 481
            L ILKAHGLAPE+      LIKKAV IRKH ERNRKDKD +      + RIHR ARYYKKT    PVWK   YESTTASTLVA
Sbjct:   72 LRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK---YESTTASTLVA 151

[Close]

BLAST of GR420678 vs. TrEMBL
Match: C0PBA7_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.449e-17
Identity = 54/93 (58.06%), Postives = 62/93 (66.67%), Query Frame = -3

Query:  242 WKQNRLGQELC-ILKAHGLAPEMYHFQRILIKKAVFIRKHFERNRKDKDFQVDFCGEQVRIHRFARYYKKT---TPVWKRSSYESTTASTLVA 508
            W ++  G ++  ILKAHGLAPE+      LIKKAV IRKH ERNRKDKD +      + RIHR ARYYK+T    P WK   YESTTASTLVA
Sbjct:   18 WSRSVTGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWK---YESTTASTLVA 107

[Close]

BLAST of GR420678 vs. TrEMBL
Match: B9RDA6_RICCO (40S ribosomal protein S13, putative OS=Ricinus communis GN=RCOM_1611610 PE=4 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.449e-17
Identity = 55/83 (66.27%), Postives = 58/83 (69.88%), Query Frame = -3

Query:  242 LCILKAHGLAPEMYHFQRILIKKAVFIRKHFERNRKDKDFQVDFCGEQVRIHRFARYYKKT---TPVWKRSSYESTTASTLVA 481
            L ILKAHGLAPE+      LIKKAV IRKH ERNRKDKD +      + RIHR ARYYKKT    PVWK   YESTTASTLVA
Sbjct:   72 LRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK---YESTTASTLVA 151

[Close]

BLAST of GR420678 vs. TrEMBL
Match: B7FGJ7_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.449e-17
Identity = 55/83 (66.27%), Postives = 58/83 (69.88%), Query Frame = -3

Query:  242 LCILKAHGLAPEMYHFQRILIKKAVFIRKHFERNRKDKDFQVDFCGEQVRIHRFARYYKKT---TPVWKRSSYESTTASTLVA 481
            L ILKAHGLAPE+      LIKKAV IRKH ERNRKDKD +      + RIHR ARYYKKT    PVWK   YESTTASTLVA
Sbjct:   72 LRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK---YESTTASTLVA 151

[Close]

BLAST of GR420678 vs. TAIR peptide
Match: AT4G00100.1 (| Symbols: ATRPS13A, RPS13, PFL2, RPS13A | ribosomal protein S13A | chr4:37172-38123 FORWARD LENGTH=151)

HSP 1 Score: 92.0485 bits (227), Expect = 2.033e-19
Identity = 55/83 (66.27%), Postives = 58/83 (69.88%), Query Frame = -3

Query:  242 LCILKAHGLAPEMYHFQRILIKKAVFIRKHFERNRKDKDFQVDFCGEQVRIHRFARYYKKT---TPVWKRSSYESTTASTLVA 481
            L ILKAHGLAPE+      LIKKAV IRKH ERNRKDKD +      + RIHR ARYYKKT    PVWK   YESTTASTLVA
Sbjct:   72 LRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK---YESTTASTLVA 151

[Close]

BLAST of GR420678 vs. TAIR peptide
Match: AT3G60770.1 (| Symbols: | Ribosomal protein S13/S15 | chr3:22460525-22461656 REVERSE LENGTH=151)

HSP 1 Score: 92.0485 bits (227), Expect = 2.033e-19
Identity = 55/83 (66.27%), Postives = 58/83 (69.88%), Query Frame = -3

Query:  242 LCILKAHGLAPEMYHFQRILIKKAVFIRKHFERNRKDKDFQVDFCGEQVRIHRFARYYKKT---TPVWKRSSYESTTASTLVA 481
            L ILKAHGLAPE+      LIKKAV IRKH ERNRKDKD +      + RIHR ARYYKKT    PVWK   YESTTASTLVA
Sbjct:   72 LRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK---YESTTASTLVA 151

The following BLAST results are available for this feature:

BLAST of GR420678 vs. SwissProt
BLAST of GR420678 vs. TrEMBL
BLAST of GR420678 vs. TAIR peptide

BLAST of GR420678 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RS13_SOYBN	1.861e-18	66.27	40S ribosomal protein S13 OS=Glycine max GN=RPS13 ...	[more]
RS132_ARATH	1.861e-18	66.27	40S ribosomal protein S13-2 OS=Arabidopsis thalian...	[more]
RS131_ARATH	1.861e-18	66.27	40S ribosomal protein S13-1 OS=Arabidopsis thalian...	[more]
RS13_MAIZE	5.415e-18	63.86	40S ribosomal protein S13 OS=Zea mays GN=RPS13 PE=...	[more]
RS132_ORYSJ	5.415e-18	63.86	40S ribosomal protein S13-2 OS=Oryza sativa subsp....	[more]
RS131_ORYSJ	5.415e-18	63.86	40S ribosomal protein S13-1 OS=Oryza sativa subsp....	[more]
RS13_PEA	2.058e-17	65.06	40S ribosomal protein S13 OS=Pisum sativum GN=RPS1...	[more]
RS13_SCHPO	5.604e-15	56.32	40S ribosomal protein S13 OS=Schizosaccharomyces p...	[more]
RS13_LUMRU	1.248e-14	54.74	40S ribosomal protein S13 OS=Lumbricus rubellus GN...	[more]
RS13_CANMA	3.632e-14	55.42	40S ribosomal protein S13 OS=Candida maltosa GN=RP...	[more]

BLAST of GR420678 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B9IBY8_POPTR	1.436e-17	65.88	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q9MAV9_PANGI	2.449e-17	66.27	Cytoplasmic ribosomal protein S13 OS=Panax ginseng...	[more]
Q3SC82_SOLLC	2.449e-17	66.27	Cytoplasmic ribosomal protein S13 OS=Solanum lycop...	[more]
Q2V995_SOLTU	2.449e-17	66.27	Cytoplasmic ribosomal protein S13-like OS=Solanum ...	[more]
D7M5S8_ARALY	2.449e-17	66.27	ATRPS13A OS=Arabidopsis lyrata subsp. lyrata GN=AR...	[more]
D7LRU2_ARALY	2.449e-17	66.27	40S ribosomal protein S13 OS=Arabidopsis lyrata su...	[more]
C6T9Q3_SOYBN	2.449e-17	66.27	Putative uncharacterized protein OS=Glycine max PE...	[more]
C0PBA7_MAIZE	2.449e-17	58.06	Putative uncharacterized protein OS=Zea mays PE=4 ...	[more]
B9RDA6_RICCO	2.449e-17	66.27	40S ribosomal protein S13, putative OS=Ricinus com...	[more]
B7FGJ7_MEDTR	2.449e-17	66.27	Putative uncharacterized protein OS=Medicago trunc...	[more]

BLAST of GR420678 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT4G00100.1	2.033e-19	66.27	\| Symbols: ATRPS13A, RPS13, PFL2, RPS13A \| ribosom...	[more]
AT3G60770.1	2.033e-19	66.27	\| Symbols: \| Ribosomal protein S13/S15 \| chr3:224...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 30..47 score
None	No IPR available	SEG	seg	seg	coord: 10..24 score
None	No IPR available	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 21..98 score: 7.9
None	No IPR available	PANTHER	PTHR11885:SF1	40S RIBOSOMAL PROTEIN S13	coord: 21..98 score: 7.9
IPR000589	Ribosomal protein S15	PFAM	PF00312	Ribosomal_S15	coord: 23..95 score: 9.9
IPR009068	S15/NS1, RNA-binding	SUPERFAMILY	47060	S15/NS1 RNA-binding domain	coord: 21..93 score: 4

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR420678 ID=GR420678; Name=GR420678; organism=Cicer arietinum; type=EST; length=537bp
ACTGAAGTCATTAAGCCACGCAAAGTCAAACCAATCTTCCAACGACAACA
GCTAGTTCTTGGACAAAACATTCCAATAGTATATTAAAAAAAAAGTTCAA
GTGCCTTTCCCAATCTGATAAATAAATTAACTACACAATAAATTCTTAGC
AAAACATAAACTATCTAACAGGTACCAACAACCAAAACAAAGTACCAAAA
CTACAAATGGTACTATCACATGAAAATCAGCGCATCCTCTAAGCAACCAG
GGTGCTGGCAGTTGTTGATTCATAGGAGCTTCTCTTCCAAACTGGTGTAG
TCTTCTTGTAATAACGAGCAAAACGGTGGATTCTAACTTGCTCTCCACAA
AAATCAACCTGAAAGTCCTTGTCCTTCCTGTTCCTCTCAAAATGCTTCCT
AATAAAAACTGCCTTCTTGATCAAAATCCTCTGGAAATGGTACATTTCAG
GTGCAAGTCCGTGAGCTTTGAGGATACAAAGCTCTTGACCTAAGCGATTT
TGCTTCCAGTGATAGGTTATTCCACACGAAAAAGAAA

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular anatomical structure
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR000589	Ribosomal_uS15
IPR009068	uS15_NS1_RNA-bd_sf

Search form