GE213103
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GE213103 vs. SwissProt
Match: RS281_ARATH (40S ribosomal protein S28-1 OS=Arabidopsis thaliana GN=RPS28A PE=2 SV=1) HSP 1 Score: 46.9802 bits (110), Expect = 2.977e-10 Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = -2 Query: 312 ECRFKHAVVVKVYGRTGFRGQVTQVRVRF 398 + + KHAVVVKV GRTG RGQVTQVRV+F Sbjct: 2 DSQIKHAVVVKVMGRTGSRGQVTQVRVKF 30 HSP 2 Score: 37.7354 bits (86), Expect = 2.977e-10 Identity = 16/19 (84.21%), Postives = 18/19 (94.74%), Query Frame = -1 Query: 250 DQNRHIMRNVKGPVREGDI 306 D +R+IMRNVKGPVREGDI Sbjct: 32 DSDRYIMRNVKGPVREGDI 50
BLAST of GE213103 vs. SwissProt
Match: RS282_ARATH (40S ribosomal protein S28-2 OS=Arabidopsis thaliana GN=RPS28C PE=2 SV=1) HSP 1 Score: 46.9802 bits (110), Expect = 8.460e-10 Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = -2 Query: 312 ECRFKHAVVVKVYGRTGFRGQVTQVRVRF 398 + + KHAVVVKV GRTG RGQVTQVRV+F Sbjct: 2 DSQIKHAVVVKVMGRTGSRGQVTQVRVKF 30 HSP 2 Score: 36.1946 bits (82), Expect = 8.460e-10 Identity = 15/19 (78.95%), Postives = 17/19 (89.47%), Query Frame = -1 Query: 250 DQNRHIMRNVKGPVREGDI 306 D +R IMRNVKGPVREGD+ Sbjct: 32 DSDRFIMRNVKGPVREGDV 50
BLAST of GE213103 vs. SwissProt
Match: RS28_MAIZE (40S ribosomal protein S28 OS=Zea mays GN=RPS28 PE=3 SV=1) HSP 1 Score: 42.3578 bits (98), Expect = 1.098e-9 Identity = 21/29 (72.41%), Postives = 24/29 (82.76%), Query Frame = -2 Query: 312 ECRFKHAVVVKVYGRTGFRGQVTQVRVRF 398 + + K AVVVKV GRTG RGQVTQVRV+F Sbjct: 2 DTQVKLAVVVKVMGRTGSRGQVTQVRVKF 30 HSP 2 Score: 40.4318 bits (93), Expect = 1.098e-9 Identity = 19/21 (90.48%), Postives = 19/21 (90.48%), Query Frame = -1 Query: 250 LDDQNRHIMRNVKGPVREGDI 312 LDDQNR IMRNVKGPV EGDI Sbjct: 31 LDDQNRLIMRNVKGPVCEGDI 51
BLAST of GE213103 vs. SwissProt
Match: RS28_ICTPU (40S ribosomal protein S28 OS=Ictalurus punctatus GN=rps28 PE=3 SV=1) HSP 1 Score: 41.2022 bits (95), Expect = 2.661e-7 Identity = 17/23 (73.91%), Postives = 20/23 (86.96%), Query Frame = -1 Query: 250 EVLDDQNRHIMRNVKGPVREGDI 318 E +DD NR I+RNVKGPVREGD+ Sbjct: 33 EFMDDSNRSIIRNVKGPVREGDV 55 HSP 2 Score: 33.4982 bits (75), Expect = 2.661e-7 Identity = 17/25 (68.00%), Postives = 18/25 (72.00%), Query Frame = -2 Query: 312 KHAVVVKVYGRTGFRGQVTQVRVRF 386 K A V KV GRTG +GQ TQVRV F Sbjct: 10 KLARVTKVLGRTGSQGQCTQVRVEF 34
BLAST of GE213103 vs. SwissProt
Match: RS28_DANRE (40S ribosomal protein S28 OS=Danio rerio GN=rps28 PE=3 SV=1) HSP 1 Score: 41.2022 bits (95), Expect = 2.661e-7 Identity = 17/23 (73.91%), Postives = 20/23 (86.96%), Query Frame = -1 Query: 250 EVLDDQNRHIMRNVKGPVREGDI 318 E +DD NR I+RNVKGPVREGD+ Sbjct: 33 EFMDDSNRSIIRNVKGPVREGDV 55 HSP 2 Score: 33.4982 bits (75), Expect = 2.661e-7 Identity = 17/25 (68.00%), Postives = 18/25 (72.00%), Query Frame = -2 Query: 312 KHAVVVKVYGRTGFRGQVTQVRVRF 386 K A V KV GRTG +GQ TQVRV F Sbjct: 10 KLARVTKVLGRTGSQGQCTQVRVEF 34
BLAST of GE213103 vs. SwissProt
Match: RS28_KLUMA (40S ribosomal protein S28 OS=Kluyveromyces marxianus GN=RPS28 PE=3 SV=1) HSP 1 Score: 37.7354 bits (86), Expect = 9.767e-7 Identity = 17/23 (73.91%), Postives = 19/23 (82.61%), Query Frame = -1 Query: 250 EVLDDQNRHIMRNVKGPVREGDI 318 E L+D R I+RNVKGPVREGDI Sbjct: 31 EFLEDTTRTIVRNVKGPVREGDI 53 HSP 2 Score: 35.039 bits (79), Expect = 9.767e-7 Identity = 17/23 (73.91%), Postives = 18/23 (78.26%), Query Frame = -2 Query: 312 AVVVKVYGRTGFRGQVTQVRVRF 380 A V+KV GRTG RG VTQVRV F Sbjct: 10 AKVIKVLGRTGSRGGVTQVRVEF 32
BLAST of GE213103 vs. SwissProt
Match: RS28_KLULA (40S ribosomal protein S28 OS=Kluyveromyces lactis GN=RPS28 PE=3 SV=1) HSP 1 Score: 37.7354 bits (86), Expect = 9.767e-7 Identity = 17/23 (73.91%), Postives = 19/23 (82.61%), Query Frame = -1 Query: 250 EVLDDQNRHIMRNVKGPVREGDI 318 E L+D R I+RNVKGPVREGDI Sbjct: 31 EFLEDTTRTIVRNVKGPVREGDI 53 HSP 2 Score: 35.039 bits (79), Expect = 9.767e-7 Identity = 17/23 (73.91%), Postives = 18/23 (78.26%), Query Frame = -2 Query: 312 AVVVKVYGRTGFRGQVTQVRVRF 380 A V+KV GRTG RG VTQVRV F Sbjct: 10 AKVIKVLGRTGSRGGVTQVRVEF 32
BLAST of GE213103 vs. TrEMBL
Match: Q2HWC2_MEDTR (Ribosomal protein S28e OS=Medicago truncatula GN=MtrDRAFT_AC147482g43v2 PE=4 SV=2) HSP 1 Score: 48.1358 bits (113), Expect = 1.933e-12 Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = -2 Query: 312 ECRFKHAVVVKVYGRTGFRGQVTQVRVRF 398 E + KHAVVVKV GRTG RGQVTQVRV+F Sbjct: 2 ESQIKHAVVVKVMGRTGSRGQVTQVRVKF 30 HSP 2 Score: 47.7506 bits (112), Expect = 1.933e-12 Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = -1 Query: 250 LDDQNRHIMRNVKGPVREGDI 312 LDDQNRHIMRNVKGPVREGDI Sbjct: 31 LDDQNRHIMRNVKGPVREGDI 51
BLAST of GE213103 vs. TrEMBL
Match: C6SZ18_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 47.7506 bits (112), Expect = 5.487e-12 Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = -1 Query: 250 LDDQNRHIMRNVKGPVREGDI 312 LDDQNRHIMRNVKGPVREGDI Sbjct: 31 LDDQNRHIMRNVKGPVREGDI 51 HSP 2 Score: 46.595 bits (109), Expect = 5.487e-12 Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = -2 Query: 312 ECRFKHAVVVKVYGRTGFRGQVTQVRVRF 398 E + KHA+VVKV GRTG RGQVTQVRV+F Sbjct: 2 ESQVKHALVVKVMGRTGSRGQVTQVRVKF 30
BLAST of GE213103 vs. TrEMBL
Match: B9S469_RICCO (Ribosomal protein S28, putative OS=Ricinus communis GN=RCOM_0037190 PE=4 SV=1) HSP 1 Score: 46.9802 bits (110), Expect = 5.822e-11 Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = -2 Query: 312 ECRFKHAVVVKVYGRTGFRGQVTQVRVRF 398 + + KHAVVVKV GRTG RGQVTQVRV+F Sbjct: 2 DSQIKHAVVVKVMGRTGSRGQVTQVRVKF 30 HSP 2 Score: 43.8986 bits (102), Expect = 5.822e-11 Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = -1 Query: 250 LDDQNRHIMRNVKGPVREGDI 312 LDDQNR IMRNVKGPVREGD+ Sbjct: 31 LDDQNRFIMRNVKGPVREGDV 51
BLAST of GE213103 vs. TrEMBL
Match: D7TI81_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00033420001 PE=4 SV=1) HSP 1 Score: 46.595 bits (109), Expect = 5.822e-11 Identity = 23/29 (79.31%), Postives = 24/29 (82.76%), Query Frame = -2 Query: 312 ECRFKHAVVVKVYGRTGFRGQVTQVRVRF 398 E KHAVVVKV GRTG RGQVTQVRV+F Sbjct: 48 ESGVKHAVVVKVMGRTGSRGQVTQVRVKF 76 HSP 2 Score: 44.2838 bits (103), Expect = 5.822e-11 Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = -1 Query: 250 LDDQNRHIMRNVKGPVREGDI 312 LDDQNR IMRNVKGPVREGDI Sbjct: 77 LDDQNRFIMRNVKGPVREGDI 97
BLAST of GE213103 vs. TrEMBL
Match: Q8LK53_HELAN (Ribosomal protein small subunit 28 OS=Helianthus annuus GN=SRPS28 PE=4 SV=1) HSP 1 Score: 46.595 bits (109), Expect = 7.563e-11 Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = -2 Query: 312 ECRFKHAVVVKVYGRTGFRGQVTQVRVRF 398 E + KHAVVVKV GR+G RGQVTQVRV+F Sbjct: 2 ESQIKHAVVVKVMGRSGSRGQVTQVRVKF 30 HSP 2 Score: 43.8986 bits (102), Expect = 7.563e-11 Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = -1 Query: 250 LDDQNRHIMRNVKGPVREGDI 312 LDDQNR IMRNVKGPVREGD+ Sbjct: 31 LDDQNRFIMRNVKGPVREGDV 51
BLAST of GE213103 vs. TrEMBL
Match: Q9ZNS5_PRUPE (Ribosomal protein S28 OS=Prunus persica GN=rps28.1 PE=4 SV=1) HSP 1 Score: 46.2098 bits (108), Expect = 7.563e-11 Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = -2 Query: 312 KHAVVVKVYGRTGFRGQVTQVRVRF 386 KHAVVVKV GRTG RGQVTQVRV+F Sbjct: 6 KHAVVVKVMGRTGSRGQVTQVRVKF 30 HSP 2 Score: 44.2838 bits (103), Expect = 7.563e-11 Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = -1 Query: 250 LDDQNRHIMRNVKGPVREGDI 312 LDDQNR IMRNVKGPVREGDI Sbjct: 31 LDDQNRFIMRNVKGPVREGDI 51
BLAST of GE213103 vs. TrEMBL
Match: A5B3G5_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_038369 PE=4 SV=1) HSP 1 Score: 46.2098 bits (108), Expect = 7.563e-11 Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = -2 Query: 312 KHAVVVKVYGRTGFRGQVTQVRVRF 386 KHAVVVKV GRTG RGQVTQVRV+F Sbjct: 3 KHAVVVKVMGRTGSRGQVTQVRVKF 27 HSP 2 Score: 44.2838 bits (103), Expect = 7.563e-11 Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = -1 Query: 250 LDDQNRHIMRNVKGPVREGDI 312 LDDQNR IMRNVKGPVREGDI Sbjct: 28 LDDQNRFIMRNVKGPVREGDI 48
BLAST of GE213103 vs. TrEMBL
Match: A9P8N1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_725361 PE=4 SV=1) HSP 1 Score: 46.595 bits (109), Expect = 9.826e-11 Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = -2 Query: 312 ECRFKHAVVVKVYGRTGFRGQVTQVRVRF 398 + + KHAVVVK+ GRTG RGQVTQVRV+F Sbjct: 2 DSQIKHAVVVKIMGRTGSRGQVTQVRVKF 30 HSP 2 Score: 43.5134 bits (101), Expect = 9.826e-11 Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = -1 Query: 250 LDDQNRHIMRNVKGPVREGDI 312 +DDQNR IMRNVKGPVREGDI Sbjct: 31 IDDQNRFIMRNVKGPVREGDI 51
BLAST of GE213103 vs. TrEMBL
Match: Q6RJY5_CAPAN (28 kDa small subunit ribosomal protein OS=Capsicum annuum PE=4 SV=1) HSP 1 Score: 45.8246 bits (107), Expect = 9.826e-11 Identity = 21/25 (84.00%), Postives = 23/25 (92.00%), Query Frame = -2 Query: 312 KHAVVVKVYGRTGFRGQVTQVRVRF 386 KHAVVVK+ GRTG RGQVTQVRV+F Sbjct: 6 KHAVVVKIMGRTGSRGQVTQVRVKF 30 HSP 2 Score: 44.2838 bits (103), Expect = 9.826e-11 Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = -1 Query: 250 LDDQNRHIMRNVKGPVREGDI 312 LDDQNR IMRNVKGPVREGDI Sbjct: 31 LDDQNRFIMRNVKGPVREGDI 51
BLAST of GE213103 vs. TrEMBL
Match: Q9ZRW5_PRUPE (Ribosomal protein S28 OS=Prunus persica GN=rps28.2 PE=4 SV=1) HSP 1 Score: 46.2098 bits (108), Expect = 4.721e-10 Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = -2 Query: 312 KHAVVVKVYGRTGFRGQVTQVRVRF 386 KHAVVVKV GRTG RGQVTQVRV+F Sbjct: 6 KHAVVVKVMGRTGSRGQVTQVRVKF 30 HSP 2 Score: 41.5874 bits (96), Expect = 4.721e-10 Identity = 19/21 (90.48%), Postives = 19/21 (90.48%), Query Frame = -1 Query: 250 LDDQNRHIMRNVKGPVREGDI 312 L DQNR IMRNVKGPVREGDI Sbjct: 31 LGDQNRFIMRNVKGPVREGDI 51
BLAST of GE213103 vs. TAIR peptide
Match: AT5G03850.1 (| Symbols: | Nucleic acid-binding, OB-fold-like protein | chr5:1028542-1028736 REVERSE LENGTH=64) HSP 1 Score: 46.9802 bits (110), Expect = 3.280e-11 Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = -2 Query: 312 ECRFKHAVVVKVYGRTGFRGQVTQVRVRF 398 + + KHAVVVKV GRTG RGQVTQVRV+F Sbjct: 2 DSQIKHAVVVKVMGRTGSRGQVTQVRVKF 30 HSP 2 Score: 37.7354 bits (86), Expect = 3.280e-11 Identity = 16/19 (84.21%), Postives = 18/19 (94.74%), Query Frame = -1 Query: 250 DQNRHIMRNVKGPVREGDI 306 D +R+IMRNVKGPVREGDI Sbjct: 32 DSDRYIMRNVKGPVREGDI 50
BLAST of GE213103 vs. TAIR peptide
Match: AT3G10090.1 (| Symbols: | Nucleic acid-binding, OB-fold-like protein | chr3:3108960-3109154 REVERSE LENGTH=64) HSP 1 Score: 46.9802 bits (110), Expect = 3.280e-11 Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = -2 Query: 312 ECRFKHAVVVKVYGRTGFRGQVTQVRVRF 398 + + KHAVVVKV GRTG RGQVTQVRV+F Sbjct: 2 DSQIKHAVVVKVMGRTGSRGQVTQVRVKF 30 HSP 2 Score: 37.7354 bits (86), Expect = 3.280e-11 Identity = 16/19 (84.21%), Postives = 18/19 (94.74%), Query Frame = -1 Query: 250 DQNRHIMRNVKGPVREGDI 306 D +R+IMRNVKGPVREGDI Sbjct: 32 DSDRYIMRNVKGPVREGDI 50
BLAST of GE213103 vs. TAIR peptide
Match: AT5G64140.1 (| Symbols: RPS28 | ribosomal protein S28 | chr5:25667529-25667723 REVERSE LENGTH=64) HSP 1 Score: 46.9802 bits (110), Expect = 9.323e-11 Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = -2 Query: 312 ECRFKHAVVVKVYGRTGFRGQVTQVRVRF 398 + + KHAVVVKV GRTG RGQVTQVRV+F Sbjct: 2 DSQIKHAVVVKVMGRTGSRGQVTQVRVKF 30 HSP 2 Score: 36.1946 bits (82), Expect = 9.323e-11 Identity = 15/19 (78.95%), Postives = 17/19 (89.47%), Query Frame = -1 Query: 250 DQNRHIMRNVKGPVREGDI 306 D +R IMRNVKGPVREGD+ Sbjct: 32 DSDRFIMRNVKGPVREGDV 50 The following BLAST results are available for this feature:
BLAST of GE213103 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot) Total hits: 7
BLAST of GE213103 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl) Total hits: 10
BLAST of GE213103 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide) Total hits: 3
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GE213103 ID=GE213103; Name=GE213103; organism=Cicer arietinum; type=EST; length=501bpback to top |