GR407321

EST Overview


Name	GR407321
Unique Name	GR407321
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	341

Libraries


Library Name	Type
LIBEST_024786 JG11 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

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BLAST of GR407321 vs. SwissProt
Match: NOP56_SCHPO (Nucleolar protein 56 OS=Schizosaccharomyces pombe GN=nop56 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.179e-26
Identity = 56/80 (70.00%), Postives = 71/80 (88.75%), Query Frame = 1

Query:  100 SMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            SMGQD+S +DL N+  FA+RV+ LS+YR++L++YL  KMN +APNLA LIGE+VGARLISHAGSLTNL+KCP+ST+QILG
Sbjct:  254 SMGQDISEIDLENILSFAERVIKLSNYRKQLHNYLVQKMNVVAPNLAELIGEMVGARLISHAGSLTNLSKCPASTVQILG 333

[Close]

BLAST of GR407321 vs. SwissProt
Match: NOP56_YEAST (Nucleolar protein 56 OS=Saccharomyces cerevisiae GN=NOP56 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.081e-25
Identity = 62/114 (54.39%), Postives = 79/114 (69.30%), Query Frame = 1

Query:    1 EDKSKLSEDKLEGLTDQVGXXXXXXXXXXXXXX-SMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            +DK+ L++D L  L   +                SMGQD+S  D+ NV +FAQRV  L+DYRR+LYDYL  KM+ +APNL+ LIGEV+GARLISHAGSLTNL+K  +ST+QILG
Sbjct:  224 KDKASLNDDSLHDLAALLNEDSGIAQRVIDNARISMGQDISETDMENVCVFAQRVASLADYRRQLYDYLCEKMHTVAPNLSELIGEVIGARLISHAGSLTNLSKQAASTVQILG 337

[Close]

BLAST of GR407321 vs. SwissProt
Match: NOP56_PONAB (Nucleolar protein 56 OS=Pongo abelii GN=NOP56 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.081e-25
Identity = 58/112 (51.79%), Postives = 80/112 (71.43%), Query Frame = 1

Query:    4 DKSKLSEDKLEGLTDQVGXXXXXXXXXXXXXXSMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            ++ +L+EDKLE L +                 SMG D+S +DLIN+  F+ RV+ LS+YR+ L+ YL +KM+ +AP+L++LIGE VGARLI+HAGSLTNLAK P+ST+QILG
Sbjct:  219 NRRELNEDKLEKLEELTMDGAKAKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILG 330

[Close]

BLAST of GR407321 vs. SwissProt
Match: NOP56_HUMAN (Nucleolar protein 56 OS=Homo sapiens GN=NOP56 PE=1 SV=4)

HSP 1 Score: 115.161 bits (287), Expect = 1.081e-25
Identity = 58/112 (51.79%), Postives = 80/112 (71.43%), Query Frame = 1

Query:    4 DKSKLSEDKLEGLTDQVGXXXXXXXXXXXXXXSMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            ++ +L+EDKLE L +                 SMG D+S +DLIN+  F+ RV+ LS+YR+ L+ YL +KM+ +AP+L++LIGE VGARLI+HAGSLTNLAK P+ST+QILG
Sbjct:  219 NRRELNEDKLEKLEELTMDGAKAKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILG 330

[Close]

BLAST of GR407321 vs. SwissProt
Match: NOP56_BOVIN (Nucleolar protein 56 OS=Bos taurus GN=NOP56 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.409e-25
Identity = 57/112 (50.89%), Postives = 80/112 (71.43%), Query Frame = 1

Query:    4 DKSKLSEDKLEGLTDQVGXXXXXXXXXXXXXXSMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            ++ +L+E+KLE L +                 SMG D+S +DLIN+  F+ RV+ LS+YR+ L+ YL +KM+ +AP+L++LIGE VGARLI+HAGSLTNLAK P+ST+QILG
Sbjct:  219 NRKELNEEKLEKLEELTMDAAKAKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILG 330

[Close]

BLAST of GR407321 vs. SwissProt
Match: NOP56_MACFA (Nucleolar protein 56 OS=Macaca fascicularis GN=NOP56 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.146e-25
Identity = 57/112 (50.89%), Postives = 80/112 (71.43%), Query Frame = 1

Query:    4 DKSKLSEDKLEGLTDQVGXXXXXXXXXXXXXXSMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            ++ +L+E+KLE L +                 SMG D+S +DLIN+  F+ RV+ LS+YR+ L+ YL +KM+ +AP+L++LIGE VGARLI+HAGSLTNLAK P+ST+QILG
Sbjct:  219 NRRELNEEKLEKLEELTMDGAKAKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILG 330

[Close]

BLAST of GR407321 vs. SwissProt
Match: NOP56_MOUSE (Nucleolar protein 56 OS=Mus musculus GN=Nop56 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.109e-25
Identity = 57/112 (50.89%), Postives = 80/112 (71.43%), Query Frame = 1

Query:    4 DKSKLSEDKLEGLTDQVGXXXXXXXXXXXXXXSMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            ++ +L+E+KLE L +                 SMG D+S +DLIN+  F+ RV+ LS+YR+ L+ YL +KM+ +AP+L++LIGE VGARLI+HAGSLTNLAK P+ST+QILG
Sbjct:  219 NRRELNEEKLEKLEEITMDGAKAKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILG 330

[Close]

BLAST of GR407321 vs. SwissProt
Match: NOP58_ASPTN (Nucleolar protein 58 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=nop58 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.474e-22
Identity = 49/80 (61.25%), Postives = 65/80 (81.25%), Query Frame = 1

Query:  100 SMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            SMG ++S  DL N+   A++V+  S+YR++L  YLT +MN IAPNL +L+GE+VGARLI+HAGSLTNL+K P+STLQILG
Sbjct:  244 SMGTEISQEDLENIQALAEQVVGFSEYRQQLASYLTARMNAIAPNLTALVGELVGARLIAHAGSLTNLSKSPASTLQILG 323

[Close]

BLAST of GR407321 vs. SwissProt
Match: NOP5B_ARATH (Probable nucleolar protein 5-2 OS=Arabidopsis thaliana GN=NOP5-2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.111e-21
Identity = 47/80 (58.75%), Postives = 64/80 (80.00%), Query Frame = 1

Query:  100 SMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            SMG ++S +DL+++     +V+ LS+YR +LYDYL ++MN IAPNL +L+GE+VGARLISH GSL NL+K P ST+QILG
Sbjct:  240 SMGTEVSDLDLLHIRELCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTALVGELVGARLISHGGSLLNLSKQPGSTVQILG 319

[Close]

BLAST of GR407321 vs. SwissProt
Match: NOP5A_ARATH (Probable nucleolar protein 5-1 OS=Arabidopsis thaliana GN=NOP5-1 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 2.111e-21
Identity = 47/80 (58.75%), Postives = 64/80 (80.00%), Query Frame = 1

Query:  100 SMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            SMG ++S +DL+++     +V+ L++YR +LYDYL ++MN IAPNL +L+GE+VGARLISH GSL NLAK P ST+QILG
Sbjct:  239 SMGTEVSDLDLLHIRELCDQVLSLAEYRAQLYDYLKSRMNTIAPNLTALVGELVGARLISHGGSLLNLAKQPGSTVQILG 318

[Close]

BLAST of GR407321 vs. TrEMBL
Match: Q9ZRW0_CICAR (Nucleolar protein (Fragment) OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.700e-46
Identity = 98/112 (87.50%), Postives = 98/112 (87.50%), Query Frame = 1

Query:    1 EDKSKLSEDKLEGLTDQVGXXXXXXXXXXXXXXSMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQIL 336
            EDKSKLSEDKLEGLTDQVG              SMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQIL
Sbjct:  150 EDKSKLSEDKLEGLTDQVGDEDKAKEIIEAAKASMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQIL 261

[Close]

BLAST of GR407321 vs. TrEMBL
Match: B7FLU4_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.174e-41
Identity = 89/113 (78.76%), Postives = 94/113 (83.19%), Query Frame = 1

Query:    1 EDKSKLSEDKLEGLTDQVGXXXXXXXXXXXXXXSMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            EDKSKL+EDK+E LTD VG              SMGQDLSPVDLINVHMFAQRVMDLSDYRRRL DYL+TKMNDIAPNL SL+G+ VGARLISHAGSLTNLAKCPSSTLQILG
Sbjct:  221 EDKSKLAEDKIESLTDLVGDEDKAKEIVEAAKASMGQDLSPVDLINVHMFAQRVMDLSDYRRRLSDYLSTKMNDIAPNLQSLVGDSVGARLISHAGSLTNLAKCPSSTLQILG 333

[Close]

BLAST of GR407321 vs. TrEMBL
Match: B7FLD1_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.174e-41
Identity = 89/113 (78.76%), Postives = 94/113 (83.19%), Query Frame = 1

Query:    1 EDKSKLSEDKLEGLTDQVGXXXXXXXXXXXXXXSMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            EDKSKL+EDK+E LTD VG              SMGQDLSPVDLINVHMFAQRVMDLSDYRRRL DYL+TKMNDIAPNL SL+G+ VGARLISHAGSLTNLAKCPSSTLQILG
Sbjct:  221 EDKSKLAEDKIESLTDLVGDEDKAKEIVEAAKASMGQDLSPVDLINVHMFAQRVMDLSDYRRRLSDYLSTKMNDIAPNLQSLVGDSVGARLISHAGSLTNLAKCPSSTLQILG 333

[Close]

BLAST of GR407321 vs. TrEMBL
Match: B9RAI8_RICCO (Nucleolar protein nop56, putative OS=Ricinus communis GN=RCOM_1506680 PE=4 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.099e-39
Identity = 85/113 (75.22%), Postives = 93/113 (82.30%), Query Frame = 1

Query:    1 EDKSKLSEDKLEGLTDQVGXXXXXXXXXXXXXXSMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            EDK+KLSE+K+  LTD +G              SMGQDLSP+DLINV  FAQRVMDLS+YR++LYDYL TKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG
Sbjct:  221 EDKAKLSEEKIPELTDILGDEDKAKEVVEAAKASMGQDLSPIDLINVQQFAQRVMDLSEYRKKLYDYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 333

[Close]

BLAST of GR407321 vs. TrEMBL
Match: B9I3P0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_773159 PE=4 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.197e-39
Identity = 84/113 (74.34%), Postives = 93/113 (82.30%), Query Frame = 1

Query:    1 EDKSKLSEDKLEGLTDQVGXXXXXXXXXXXXXXSMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            +DKSKLSEDKL  LTD +G              SMGQDLSP+DLINV  FAQRVMDLS+YR++L++YL TKMNDIAPNLASLIGE+VGARLISHAGSLTNLAKCPSSTLQILG
Sbjct:  221 DDKSKLSEDKLPALTDILGDEDKAKEVVEAAKASMGQDLSPIDLINVQQFAQRVMDLSEYRKKLHEYLVTKMNDIAPNLASLIGEMVGARLISHAGSLTNLAKCPSSTLQILG 333

[Close]

BLAST of GR407321 vs. TrEMBL
Match: B9IF81_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_252605 PE=4 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.452e-39
Identity = 84/113 (74.34%), Postives = 93/113 (82.30%), Query Frame = 1

Query:    1 EDKSKLSEDKLEGLTDQVGXXXXXXXXXXXXXXSMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            +DKSKLSEDKL  LTD +G              SMGQDLSP+DLINV  FAQRVMDLS+YR++L++YL TKMNDIAPNLASLIGE+VGARLISHAGSLTNLAKCPSSTLQILG
Sbjct:  221 DDKSKLSEDKLPELTDLLGDEDKAKEVVEAAKASMGQDLSPIDLINVQQFAQRVMDLSEYRKKLHEYLITKMNDIAPNLASLIGEMVGARLISHAGSLTNLAKCPSSTLQILG 333

[Close]

BLAST of GR407321 vs. TrEMBL
Match: D7SGV4_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00008506001 PE=4 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 9.300e-39
Identity = 83/113 (73.45%), Postives = 93/113 (82.30%), Query Frame = 1

Query:    1 EDKSKLSEDKLEGLTDQVGXXXXXXXXXXXXXXSMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            E+K +LSEDK+ GLT+ +G              SMGQDLSP+DLINV  FAQRVMDLS+YR++LY+YL TKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG
Sbjct:  221 ENKLELSEDKIPGLTEILGDEDKAKEIVEAAKASMGQDLSPIDLINVQQFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 333

[Close]

BLAST of GR407321 vs. TrEMBL
Match: Q9LTV0_ARATH (Nucleolar protein OS=Arabidopsis thaliana GN=At3g12860 PE=4 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.992e-37
Identity = 81/112 (72.32%), Postives = 91/112 (81.25%), Query Frame = 1

Query:    4 DKSKLSEDKLEGLTDQVGXXXXXXXXXXXXXXSMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            DKSKLSE+ +  LT+ +G              SMGQDLSPVDLINV  FAQRVMDL+DYR++LYDYL TKM+DIAPNLA+LIGE+VGARLISHAGSLTNLAKCPSSTLQILG
Sbjct:  222 DKSKLSEEHIPMLTEALGDEDKAREVIEAGKASMGQDLSPVDLINVQTFAQRVMDLADYRKKLYDYLVTKMSDIAPNLAALIGEMVGARLISHAGSLTNLAKCPSSTLQILG 333

[Close]

BLAST of GR407321 vs. TrEMBL
Match: Q0WVV7_ARATH (Putative nucleolar protein (Fragment) OS=Arabidopsis thaliana GN=At3g12860 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.992e-37
Identity = 81/112 (72.32%), Postives = 91/112 (81.25%), Query Frame = 1

Query:    4 DKSKLSEDKLEGLTDQVGXXXXXXXXXXXXXXSMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            DKSKLSE+ +  LT+ +G              SMGQDLSPVDLINV  FAQRVMDL+DYR++LYDYL TKM+DIAPNLA+LIGE+VGARLISHAGSLTNLAKCPSSTLQILG
Sbjct:  222 DKSKLSEEHIPMLTEALGDEDKAREVIEAGKASMGQDLSPVDLINVQTFAQRVMDLADYRKKLYDYLVTKMSDIAPNLAALIGEMVGARLISHAGSLTNLAKCPSSTLQILG 333

[Close]

BLAST of GR407321 vs. TrEMBL
Match: D7L0L0_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_478647 PE=4 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.992e-37
Identity = 82/112 (73.21%), Postives = 91/112 (81.25%), Query Frame = 1

Query:    4 DKSKLSEDKLEGLTDQVGXXXXXXXXXXXXXXSMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            DKSKLSE+ +  LT+ +G              SMGQDLSPVDLINV  FAQRVMDL+DYR++LYDYL TKM+DIAPNLASLIGE+VGARLISHAGSLTNLAKCPSSTLQILG
Sbjct:  222 DKSKLSEEHVPMLTEILGDEDKAREVVEAGKASMGQDLSPVDLINVQSFAQRVMDLADYRKKLYDYLVTKMSDIAPNLASLIGEMVGARLISHAGSLTNLAKCPSSTLQILG 333

[Close]

BLAST of GR407321 vs. TAIR peptide
Match: AT3G12860.1 (| Symbols: | NOP56-like pre RNA processing ribonucleoprotein | chr3:4091678-4093921 FORWARD LENGTH=499)

HSP 1 Score: 157.918 bits (398), Expect = 1.156e-39
Identity = 81/112 (72.32%), Postives = 91/112 (81.25%), Query Frame = 1

Query:    4 DKSKLSEDKLEGLTDQVGXXXXXXXXXXXXXXSMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            DKSKLSE+ +  LT+ +G              SMGQDLSPVDLINV  FAQRVMDL+DYR++LYDYL TKM+DIAPNLA+LIGE+VGARLISHAGSLTNLAKCPSSTLQILG
Sbjct:  222 DKSKLSEEHIPMLTEALGDEDKAREVIEAGKASMGQDLSPVDLINVQTFAQRVMDLADYRKKLYDYLVTKMSDIAPNLAALIGEMVGARLISHAGSLTNLAKCPSSTLQILG 333

[Close]

BLAST of GR407321 vs. TAIR peptide
Match: AT1G56110.1 (| Symbols: NOP56 | homolog of nucleolar protein NOP56 | chr1:20984544-20986893 REVERSE LENGTH=522)

HSP 1 Score: 154.451 bits (389), Expect = 1.278e-38
Identity = 78/113 (69.03%), Postives = 91/113 (80.53%), Query Frame = 1

Query:    1 EDKSKLSEDKLEGLTDQVGXXXXXXXXXXXXXXSMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            +DKSKL+ED +  LT+ +G              SMG DLSP+DLINV  FAQ+VMDL+DYR++LYDYL TKM+DIAPNLA+LIGE+VGARLISHAGSLTNLAKCPSSTLQILG
Sbjct:  221 DDKSKLTEDHIPMLTEVLGDEDKAKEVIEAGKASMGSDLSPLDLINVQTFAQKVMDLADYRKKLYDYLVTKMSDIAPNLAALIGEMVGARLISHAGSLTNLAKCPSSTLQILG 333

[Close]

BLAST of GR407321 vs. TAIR peptide
Match: AT5G27120.1 (| Symbols: | NOP56-like pre RNA processing ribonucleoprotein | chr5:9541287-9543684 FORWARD LENGTH=533)

HSP 1 Score: 100.908 bits (250), Expect = 1.677e-22
Identity = 47/80 (58.75%), Postives = 64/80 (80.00%), Query Frame = 1

Query:  100 SMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            SMG ++S +DL+++     +V+ L++YR +LYDYL ++MN IAPNL +L+GE+VGARLISH GSL NLAK P ST+QILG
Sbjct:  239 SMGTEVSDLDLLHIRELCDQVLSLAEYRAQLYDYLKSRMNTIAPNLTALVGELVGARLISHGGSLLNLAKQPGSTVQILG 318

[Close]

BLAST of GR407321 vs. TAIR peptide
Match: AT3G05060.1 (| Symbols: | NOP56-like pre RNA processing ribonucleoprotein | chr3:1413174-1415564 REVERSE LENGTH=533)

HSP 1 Score: 100.908 bits (250), Expect = 1.677e-22
Identity = 47/80 (58.75%), Postives = 64/80 (80.00%), Query Frame = 1

Query:  100 SMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            SMG ++S +DL+++     +V+ LS+YR +LYDYL ++MN IAPNL +L+GE+VGARLISH GSL NL+K P ST+QILG
Sbjct:  240 SMGTEVSDLDLLHIRELCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTALVGELVGARLISHGGSLLNLSKQPGSTVQILG 319

[Close]

BLAST of GR407321 vs. TAIR peptide
Match: AT5G27140.1 (| Symbols: | NOP56-like pre RNA processing ribonucleoprotein | chr5:9548542-9550597 FORWARD LENGTH=445)

HSP 1 Score: 80.1073 bits (196), Expect = 3.063e-16
Identity = 39/76 (51.32%), Postives = 56/76 (73.68%), Query Frame = 1

Query:  112 DLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            ++S +DL+++     +V+ +++ +  L D L  KMN IAPNL +L+GE+VGARLISH GSL NL+K P ST+QILG
Sbjct:  213 EVSDLDLMHIQELCDQVLSIAEDKTLLCDDLKNKMNKIAPNLTALVGELVGARLISHCGSLWNLSKLPWSTIQILG 288

[Close]

BLAST of GR407321 vs. TAIR peptide
Match: AT1G60170.1 (| Symbols: emb1220 | pre-mRNA processing ribonucleoprotein binding region-containing protein | chr1:22193008-22195177 FORWARD LENGTH=485)

HSP 1 Score: 59.3066 bits (142), Expect = 5.595e-10
Identity = 25/61 (40.98%), Postives = 43/61 (70.49%), Query Frame = 1

Query:  157 RVMDLSDYRRRLYDYLTTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILG 339
            R +DL   R+++ +++ +KM  IAPNL++++G  V A+L+  AG L+ LAK P+  +Q+LG
Sbjct:  194 RALDLDSARKKVLEFVESKMGSIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQVLG 254

The following BLAST results are available for this feature:

BLAST of GR407321 vs. SwissProt
BLAST of GR407321 vs. TrEMBL
BLAST of GR407321 vs. TAIR peptide

BLAST of GR407321 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
NOP56_SCHPO	2.179e-26	70.00	Nucleolar protein 56 OS=Schizosaccharomyces pombe ...	[more]
NOP56_YEAST	1.081e-25	54.39	Nucleolar protein 56 OS=Saccharomyces cerevisiae G...	[more]
NOP56_PONAB	1.081e-25	51.79	Nucleolar protein 56 OS=Pongo abelii GN=NOP56 PE=2...	[more]
NOP56_HUMAN	1.081e-25	51.79	Nucleolar protein 56 OS=Homo sapiens GN=NOP56 PE=1...	[more]
NOP56_BOVIN	2.409e-25	50.89	Nucleolar protein 56 OS=Bos taurus GN=NOP56 PE=2 S...	[more]
NOP56_MACFA	3.146e-25	50.89	Nucleolar protein 56 OS=Macaca fascicularis GN=NOP...	[more]
NOP56_MOUSE	4.109e-25	50.89	Nucleolar protein 56 OS=Mus musculus GN=Nop56 PE=1...	[more]
NOP58_ASPTN	9.474e-22	61.25	Nucleolar protein 58 OS=Aspergillus terreus (strai...	[more]
NOP5B_ARATH	2.111e-21	58.75	Probable nucleolar protein 5-2 OS=Arabidopsis thal...	[more]
NOP5A_ARATH	2.111e-21	58.75	Probable nucleolar protein 5-1 OS=Arabidopsis thal...	[more]

BLAST of GR407321 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
Q9ZRW0_CICAR	2.700e-46	87.50	Nucleolar protein (Fragment) OS=Cicer arietinum PE...	[more]
B7FLU4_MEDTR	1.174e-41	78.76	Putative uncharacterized protein OS=Medicago trunc...	[more]
B7FLD1_MEDTR	1.174e-41	78.76	Putative uncharacterized protein OS=Medicago trunc...	[more]
B9RAI8_RICCO	1.099e-39	75.22	Nucleolar protein nop56, putative OS=Ricinus commu...	[more]
B9I3P0_POPTR	3.197e-39	74.34	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9IF81_POPTR	5.452e-39	74.34	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
D7SGV4_VITVI	9.300e-39	73.45	Whole genome shotgun sequence of line PN40024, sca...	[more]
Q9LTV0_ARATH	2.992e-37	72.32	Nucleolar protein OS=Arabidopsis thaliana GN=At3g1...	[more]
Q0WVV7_ARATH	2.992e-37	72.32	Putative nucleolar protein (Fragment) OS=Arabidops...	[more]
D7L0L0_ARALY	2.992e-37	73.21	Putative uncharacterized protein OS=Arabidopsis ly...	[more]

BLAST of GR407321 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 6


Match Name	E-value	Identity	Description
AT3G12860.1	1.156e-39	72.32	\| Symbols: \| NOP56-like pre RNA processing ribonu...	[more]
AT1G56110.1	1.278e-38	69.03	\| Symbols: NOP56 \| homolog of nucleolar protein NO...	[more]
AT5G27120.1	1.677e-22	58.75	\| Symbols: \| NOP56-like pre RNA processing ribonu...	[more]
AT3G05060.1	1.677e-22	58.75	\| Symbols: \| NOP56-like pre RNA processing ribonu...	[more]
AT5G27140.1	3.063e-16	51.32	\| Symbols: \| NOP56-like pre RNA processing ribonu...	[more]
AT1G60170.1	5.595e-10	40.98	\| Symbols: emb1220 \| pre-mRNA processing ribonucle...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002687	Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain	PFAM	PF01798	Nop	coord: 46..114 score: 1.2
None	No IPR available	PANTHER	PTHR10894	NUCLEOLAR PROTEIN NOP56	coord: 2..114 score: 4.4
None	No IPR available	SEG	seg	seg	coord: 20..33 score
None	No IPR available	SUPERFAMILY	89124	Nop domain	coord: 8..114 score: 5.4

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR407321 ID=GR407321; Name=GR407321; organism=Cicer arietinum; type=EST; length=341bp
GAGGACAAATCAAAGTTGTCTGAAGACAAGCTTGAAGGCTTAACTGACCA
AGTTGGAGATGAAGATAAAGCAAAGGAGATTATTGAAGCTGCCAAAGCCT
CCATGGGACAGGATTTGTCCCCTGTTGACTTGATCAATGTTCATATGTTT
GCACAGAGGGTGATGGACCTATCTGATTACAGAAGAAGATTGTATGATTA
CCTGACCACTAAAATGAATGACATTGCACCAAATTTGGCTTCTTTAATTG
GTGAAGTTGTTGGTGCACGTTTAATTTCCCATGCTGGTAGCCTCACAAAT
TTAGCCAAGTGCCCCTCTTCAACTCTTCAGATTCTTGGTGC

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
IPR002687	Nop_dom

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