FE672010

EST Overview
NameFE672010
Unique NameFE672010
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length465
Libraries
Library NameType
LIBEST_022820 Drought-stressed chickpea leave librarycdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Homology
BLAST of FE672010 vs. TrEMBL
Match: D3YBD2_TRIRP (Transcription initiation factor OS=Trifolium repens PE=4 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.611e-22
Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = -3
Query:  269 GPTSHGNSAAARKFGKNHSPGCQTRVARSISVKDVIAVLEREPQMSKSSLLYQLYERIHADASNE 463
            GPTS GNSAAARKFGKN SPG QTR+AR+ISVKDVIAVLEREPQMSKSSLLY++++RIH+D S E
Sbjct:  870 GPTSLGNSAAARKFGKNQSPGSQTRIARNISVKDVIAVLEREPQMSKSSLLYRMHDRIHSDTSTE 934          
BLAST of FE672010 vs. TrEMBL
Match: B9S3E1_RICCO (Transcription initiation factor, putative OS=Ricinus communis GN=RCOM_0732980 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.785e-13
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = -3
Query:  248 SAAARKFGKNHSPGCQTRVARSISVKDVIAVLEREPQMSKSSLLYQLYERIHADASNE*DNTMLI 442
            S  AR+FG+N S   QTR ARSISVKDVIA LEREPQMSKS+L+Y+LYER+ +DA  E     L+
Sbjct:  825 STGARRFGRNQSVAPQTRPARSISVKDVIAALEREPQMSKSTLIYRLYERMQSDALIEYSTASLL 889          
BLAST of FE672010 vs. TrEMBL
Match: B9GNQ9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_551795 PE=4 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.046e-13
Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = -3
Query:  269 PTSHGNSAAARKFGKNHSPGCQTRVARSISVKDVIAVLEREPQMSKSSLLYQLYERIHADASNE 460
            P     S A RKFG+N +   QT+V R+I+VKDV+AVLEREPQMS+S+L+YQLYERI +DA+ E
Sbjct:  316 PAVPSASGAVRKFGRNQAIVPQTKVVRTITVKDVMAVLEREPQMSRSTLIYQLYERIRSDAAPE 379          
BLAST of FE672010 vs. TrEMBL
Match: B9R722_RICCO (Transcription initiation factor, putative OS=Ricinus communis GN=RCOM_1588000 PE=4 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.367e-12
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = -3
Query:  269 SAAARKFGKNHSPGCQTRVARSISVKDVIAVLEREPQMSKSSLLYQLYERIHADASNE 442
            S   RK G+N +   Q++VARSISVKDVIA LEREPQMSKS+L+Y+LYER+ +DA  E
Sbjct:  868 STGVRKVGRNQAFTPQSKVARSISVKDVIAALEREPQMSKSTLIYRLYERVQSDAPTE 925          
BLAST of FE672010 vs. TrEMBL
Match: B9IBU8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1097911 PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.797e-12
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = -3
Query:  269 SHGNSAAARKFGKNHSPGCQTRVARSISVKDVIAVLEREPQMSKSSLLYQLYERIHADASNE 454
            S  +  + RK G+N +   QT+V R+ISVKDV++VLEREPQMS+S+L+YQLYERI +DA+ E
Sbjct:  814 SSASGKSGRKCGRNQAIVPQTKVVRTISVKDVMSVLEREPQMSRSTLIYQLYERIRSDATAE 875          
BLAST of FE672010 vs. TrEMBL
Match: A5ARH4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002028 PE=4 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.862e-11
Identity = 34/54 (62.96%), Postives = 47/54 (87.04%), Query Frame = -3
Query:  269 RKFGKNHSPGCQTRVARSISVKDVIAVLEREPQMSKSSLLYQLYERIHADASNE 430
            RKFG+N++   QTRVAR+I+VKDVI+VLEREPQM KS+L+Y+LYE++ + A+ E
Sbjct:  853 RKFGRNNAIVPQTRVARNITVKDVISVLEREPQMLKSTLIYRLYEKMRSGAATE 906          
BLAST of FE672010 vs. TrEMBL
Match: Q9FMH0_ARATH (Gb|AAF24960.1 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.572e-8
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = -3
Query:  296 NSAAARKFGKNHSPGCQTRVARSISVKDVIAVLEREPQMSKSSLLYQLYE 445
            +    R+ GKN     Q +V R+ISVKDV+AVLEREPQMSKS+L+Y+L +
Sbjct:  640 SGTGGRRVGKNQGSSLQPKVVRTISVKDVVAVLEREPQMSKSTLMYRLIQ 689          
BLAST of FE672010 vs. TrEMBL
Match: Q6SJR0_ARATH (Putative uncharacterized protein At5g43130 (Fragment) OS=Arabidopsis thaliana GN=TAF4B PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.572e-8
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = -3
Query:  296 NSAAARKFGKNHSPGCQTRVARSISVKDVIAVLEREPQMSKSSLLYQLYE 445
            +    R+ GKN     Q +V R+ISVKDV+AVLEREPQMSKS+L+Y+L +
Sbjct:  774 SGTGGRRVGKNQGSSLQPKVVRTISVKDVVAVLEREPQMSKSTLMYRLIQ 823          
BLAST of FE672010 vs. TrEMBL
Match: D7MQ05_ARALY (Transcription initiation factor OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_917373 PE=4 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.572e-8
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = -3
Query:  296 NSAAARKFGKNHSPGCQTRVARSISVKDVIAVLEREPQMSKSSLLYQLYE 445
            +    R+ GKN     Q +V R+ISVKDV+AVLEREPQMSKS+L+Y+L +
Sbjct:  775 SGTGGRRVGKNQGSSLQPKVVRTISVKDVVAVLEREPQMSKSTLMYRLIQ 824          
BLAST of FE672010 vs. TrEMBL
Match: D7SXS7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_91.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00037863001 PE=4 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.121e-7
Identity = 27/51 (52.94%), Postives = 40/51 (78.43%), Query Frame = -3
Query:  275 KFGKNHSPGCQTRVARSISVKDVIAVLEREPQMSKSSLLYQLYERIHADAS 427
            + G+N S   Q++V RS+S+KD++A LEREPQM+KS+L  +L ERIH+D +
Sbjct:   30 RVGENQSARPQSKVVRSVSIKDLLATLEREPQMAKSALTQRLRERIHSDGT 80          
BLAST of FE672010 vs. TAIR peptide
Match: AT5G43130.2 (| Symbols: TAF4 | TBP-associated factor 4 | chr5:17315608-17321144 REVERSE LENGTH=852)

HSP 1 Score: 61.6178 bits (148), Expect = 2.186e-10
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = -3
Query:  296 AAARKFGKNHSPGCQTRVARSISVKDVIAVLEREPQMSKSSLLYQLYE 439
            A  R+ GKN     Q +V R+ISVKDV+AVLEREPQMSKS+L+Y+L +
Sbjct:  805 AGGRRVGKNQGSSLQPKVVRTISVKDVVAVLEREPQMSKSTLMYRLIQ 852          
BLAST of FE672010 vs. TAIR peptide
Match: AT5G43130.1 (| Symbols: TAF4, TAF4B | TBP-associated factor 4 | chr5:17315608-17321144 REVERSE LENGTH=823)

HSP 1 Score: 60.4622 bits (145), Expect = 4.870e-10
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = -3
Query:  296 NSAAARKFGKNHSPGCQTRVARSISVKDVIAVLEREPQMSKSSLLYQLYE 445
            +    R+ GKN     Q +V R+ISVKDV+AVLEREPQMSKS+L+Y+L +
Sbjct:  774 SGTGGRRVGKNQGSSLQPKVVRTISVKDVVAVLEREPQMSKSTLMYRLIQ 823          
BLAST of FE672010 vs. TAIR peptide
Match: AT1G27720.1 (| Symbols: TAF4, TAF4B | TBP-associated factor 4B | chr1:9643351-9647376 REVERSE LENGTH=720)

HSP 1 Score: 58.151 bits (139), Expect = 2.417e-9
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = -3
Query:  281 KFGKNHSPGCQTRVARSISVKDVIAVLEREPQMSKSSLLYQLYERIHAD 427
            +FGKN       +V RSISVKDVIAV+E+EPQMS+S+LLY++Y RI +D
Sbjct:  674 QFGKNQG---LPKVVRSISVKDVIAVVEKEPQMSRSTLLYRVYNRICSD 719          
The following BLAST results are available for this feature:
BLAST of FE672010 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
D3YBD2_TRIRP1.611e-2281.54Transcription initiation factor OS=Trifolium repen... [more]
B9S3E1_RICCO1.785e-1363.08Transcription initiation factor, putative OS=Ricin... [more]
B9GNQ9_POPTR3.046e-1360.94Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9R722_RICCO3.367e-1263.79Transcription initiation factor, putative OS=Ricin... [more]
B9IBU8_POPTR9.797e-1258.06Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
A5ARH4_VITVI4.862e-1162.96Putative uncharacterized protein OS=Vitis vinifera... [more]
Q9FMH0_ARATH6.572e-856.00Gb|AAF24960.1 OS=Arabidopsis thaliana PE=4 SV=1[more]
Q6SJR0_ARATH6.572e-856.00Putative uncharacterized protein At5g43130 (Fragme... [more]
D7MQ05_ARALY6.572e-856.00Transcription initiation factor OS=Arabidopsis lyr... [more]
D7SXS7_VITVI1.121e-752.94Whole genome shotgun sequence of line PN40024, sca... [more]
back to top
BLAST of FE672010 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT5G43130.22.186e-1060.42| Symbols: TAF4 | TBP-associated factor 4 | chr5:1... [more]
AT5G43130.14.870e-1056.00| Symbols: TAF4, TAF4B | TBP-associated factor 4 |... [more]
AT1G27720.12.417e-961.22| Symbols: TAF4, TAF4B | TBP-associated factor 4B ... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007900Transcription initiation factor TFIID component TAF4PFAMPF05236TAF4coord: 11..56
score: 1.8
NoneNo IPR availablePANTHERPTHR15138FAMILY NOT NAMEDcoord: 23..52
score: 1.2
NoneNo IPR availablePANTHERPTHR15138:SF3SUBFAMILY NOT NAMEDcoord: 23..52
score: 1.2

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>FE672010 ID=FE672010; Name=FE672010; organism=Cicer arietinum; type=EST; length=465bp
TACACTCTTCACCACCCAATTACAGTAGTACGCCAAAACTGATTTTCTGA
ACGTCTATGTTAATTTAGCACCTATTCCCGAAGCAAATGATATGAGGGAT
GACTGTTGTGAAAAAGAGCACAACACACATTTTCCTTCCGCTTGTGTCCA
GCAGGAGAAATGCTCATGTTTGTTACTAAAACATATACAACATATCAGGT
ATCCTTCCACTGAATGAGTCAAATCTTTTTACACGCCTCCTGATGTAAAT
CAGCATCGTGTTATCTTATTCATTGGAAGCATCAGCATGAATTCTCTCAT
ACAATTGATATAAGAGTGATGATTTGGACATCTGAGGTTCCCTCTCCAAG
ACGGCAATCACATCCTTCACAGAGATGCTACGAGCTACGCGAGTTTGACA
TCCAGGGGAATGGTTTTTCCCAAATTTCCTAGCAGCGGCTGAATTCCCAT
GAGAAGTTGGACCTT
back to top
Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Cellular Component
TermDefinition
GO:0005669transcription factor TFIID complex
Vocabulary: Biological Process
TermDefinition
GO:0006352DNA-templated transcription initiation
Vocabulary: Molecular Function
TermDefinition
GO:0016986obsolete transcription initiation factor activity
Vocabulary: INTERPRO
TermDefinition
IPR007900TAF4_C