GR420683

EST Overview


Name	GR420683
Unique Name	GR420683
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	384

Libraries


Library Name	Type
LIBEST_024786 JG11 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR420683 vs. TrEMBL
Match: Q39450_CICAR (Pathogenesis related protein OS=Cicer arietinum GN=capr1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.194e-9
Identity = 46/85 (54.12%), Postives = 52/85 (61.18%), Query Frame = -2

Query:   99 EANLGYNYSIVGGAGLSETVEK--FEANIM*RPKWRIGSIGKVNIK---PGKNKPNERRWKEVQERVMLGKARPLRVTFWPFQNP 338
            EANLGYNYSIVGGAGLSETVE+  FEA +   P    GSIGKV++K    G  KPNE   KEVQE    G A    +  +   NP
Sbjct:   76 EANLGYNYSIVGGAGLSETVERYHFEAKLCEGPNG--GSIGKVSVKYQTKGDAKPNE---KEVQEGKAKGDALFKAIEGYVLANP 155

[Close]

BLAST of GR420683 vs. TrEMBL
Match: C6T206_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 2.242e-7
Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = -2

Query:  171 EANLGYNYSIVGGAGLSETVEK--FEANIM*RPKWRIGSIGKVNIK---PGKNKPNERRWK 338
            EAN GYNYS+VGG GL +TVEK  FEA ++  P    GSI K+ +K    G   P+E   K
Sbjct:   76 EANWGYNYSVVGGVGLPDTVEKISFEAKLVADPNG--GSIAKITVKYQTKGDANPSEEELK 134

HSP 2 Score: 28.8758 bits (63), Expect = 2.242e-7
Identity = 15/24 (62.50%), Postives = 18/24 (75.00%), Query Frame = -1

Query:  112 EEMEGGSRKGDAWKGKAIEGYVLA 183
            EE++ G  KGDA   KA+EGYVLA
Sbjct:  131 EELKSGKAKGDALF-KALEGYVLA 153

The following BLAST results are available for this feature:

BLAST of GR420683 vs. TrEMBL

BLAST of GR420683 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 2


Match Name	E-value	Identity	Description
Q39450_CICAR	1.194e-9	54.12	Pathogenesis related protein OS=Cicer arietinum GN...	[more]
C6T206_SOYBN	2.242e-7	49.18	Putative uncharacterized protein OS=Glycine max PE...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 2..15 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR420683 ID=GR420683; Name=GR420683; organism=Cicer arietinum; type=EST; length=384bp
GGAAAACAAAAAACTAATTGAAAGCTAACAACAGTTTATTTGAATAAAAA
AACATCAACTCATGTTGTATAGTTAGGTCGTAATTGAAGGATGGATCAAG
GATTTTGAAAAGGCCAAAACGTAACCCTCAATGGCCTTGCCTTTCCAAGC
ATCACCCTTTCTTGAACCTCCTTCCATCTCCTCTCATTGGGCTTATTTTT
ACCCGGTTTGATATTCACCTTCCCAATGGACCCAATTCTCCATTTGGGCC
TTCACATGATATTTGCCTCAAACTTTTCCACTGTCTCTGACAATCCTGCA
CCCCCAACTATGCTGTAATTATATCCCAAATTTGCTTCAATACAAGGTTT
TCAATTGCTTCTATTTTGTGCAACACGCTCCACC

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