GR410116

EST Overview


Name	GR410116
Unique Name	GR410116
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	478

Libraries


Library Name	Type
LIBEST_024779 ICC1882 Slow drought stressed root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR410116 vs. TrEMBL
Match: C6SVW2_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.558e-17
Identity = 37/60 (61.67%), Postives = 44/60 (73.33%), Query Frame = -2

Query:   46 RNGVTRPTIICKDRGPCYQKKVTCPARCFSSFSHSXXXXXXXXXXXGCNIDCKNKCIAYC 225
            + G+ RPT++CKD+GPC+QKKVTCPA+CFSSFS S           GC IDCK KCIAYC
Sbjct:  109 KGGIIRPTVVCKDKGPCFQKKVTCPAKCFSSFSRSGKGYGGGGGGGGCTIDCKKKCIAYC 168

[Close]

BLAST of GR410116 vs. TrEMBL
Match: C6TKQ7_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.289e-16
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = -2

Query:   46 RNGVTRPTIICKDRGPCYQKKVTCPARCFSSFSHSXXXXXXXXXXXGCNIDCKNKCIAYC 225
            + G+ RPT++CKD+GPC+QKKVTCPA+CFSSFS S           GC +DCK KCIAYC
Sbjct:   87 KGGIIRPTVLCKDKGPCFQKKVTCPAKCFSSFSRSGKGYGAGGGGGGCTVDCKKKCIAYC 146

[Close]

BLAST of GR410116 vs. TrEMBL
Match: B9S5Z9_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1062760 PE=4 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.416e-15
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = -2

Query:   46 RNGVTRPTIICKDRGPCYQKKVTCPARCFSSFSHSXXXXXXXXXXXGCNIDCKNKCIAYC 225
            + G+ RPT++CK++GPCY+KK+TCPA+CF+S+S S           GC +DCK KCIAYC
Sbjct:   88 KGGIIRPTVVCKEKGPCYKKKLTCPAKCFTSYSRSGKGYGGGGGGGGCTMDCKKKCIAYC 147

[Close]

BLAST of GR410116 vs. TrEMBL
Match: B9HYY5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_568278 PE=4 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.576e-14
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = -2

Query:   46 RNGVTRPTIICKDRGPCYQKKVTCPARCFSSFSHSXXXXXXXXXXXGCNIDCKNKCIAYC 225
            + GV +P+++CK++GPCY+KK+TCPA+CF+S+S S           GC IDCK KC+AYC
Sbjct:   83 KGGVIKPSVVCKEKGPCYKKKLTCPAKCFTSYSRSGKGYGGGGGGGGCTIDCKKKCVAYC 142

[Close]

BLAST of GR410116 vs. TrEMBL
Match: Q9FRF5_ORYSJ (Expressed protein OS=Oryza sativa subsp. japonica GN=Os03g47270 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.688e-14
Identity = 34/60 (56.67%), Postives = 40/60 (66.67%), Query Frame = -2

Query:   46 RNGVTRPTIICKDRGPCYQKKVTCPARCFSSFSHSXXXXXXXXXXXGCNIDCKNKCIAYC 225
            R GV  PT++C D+GPCY+KKVTCP +CFSS+S S           GC IDCK KC AYC
Sbjct:  105 RGGVVVPTVVCSDKGPCYRKKVTCPKKCFSSYSSSGKGYGGGGGGGGCTIDCKTKCTAYC 164

[Close]

BLAST of GR410116 vs. TrEMBL
Match: A2XKL2_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_12992 PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.688e-14
Identity = 34/60 (56.67%), Postives = 40/60 (66.67%), Query Frame = -2

Query:   46 RNGVTRPTIICKDRGPCYQKKVTCPARCFSSFSHSXXXXXXXXXXXGCNIDCKNKCIAYC 225
            R GV  PT++C D+GPCY+KKVTCP +CFSS+S S           GC IDCK KC AYC
Sbjct:  105 RGGVVVPTVVCSDKGPCYRKKVTCPKKCFSSYSSSGKGYGGGGGGGGCTIDCKTKCTAYC 164

[Close]

BLAST of GR410116 vs. TrEMBL
Match: D7MER6_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_914508 PE=4 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.334e-13
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = -2

Query:   46 RNGVTRPTIICKDRGPCYQKKVTCPARCFSSFSHSXXXXXXXXXXXGCNIDCKNKCIAYC 225
            + GV RPT+ C+++GPCY KK+ CPA+CF SFS S           GC +DCK KCIAYC
Sbjct:   72 KGGVVRPTVTCREKGPCYGKKLRCPAKCFKSFSRSGKGYGGGGGGGGCTMDCKKKCIAYC 131

[Close]

BLAST of GR410116 vs. TrEMBL
Match: B9H241_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_555520 PE=4 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.334e-13
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = -2

Query:   46 RNGVTRPTIICKDRGPCYQKKVTCPARCFSSFSHSXXXXXXXXXXXGCNIDCKNKCIAYC 225
            R GV RP+++CK+RGPCY+KK+TCPA+CF+S S S           GC +DCK KC+AYC
Sbjct:   90 RGGVVRPSVVCKERGPCYKKKLTCPAKCFTSHSRSGKGYGGGGGGGGCTLDCK-KCVAYC 148

[Close]

BLAST of GR410116 vs. TrEMBL
Match: Q9SVT5_ARATH (AT4g21620/F17L22_80 OS=Arabidopsis thaliana GN=AT4g21620 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.621e-13
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = -2

Query:   46 RNGVTRPTIICKDRGPCYQKKVTCPARCFSSFSHSXXXXXXXXXXXGCNIDCKNKCIAYC 225
            + GV RPT+ CK++GPC  KK+ CPA+CF SFS S           GC +DCK KCIAYC
Sbjct:   72 KGGVVRPTVTCKEKGPCNGKKLRCPAKCFKSFSRSGKGYGGGGGGGGCTMDCKKKCIAYC 131

[Close]

BLAST of GR410116 vs. TrEMBL
Match: C4J5G4_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.129e-12
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = -2

Query:   46 RNGVTRPTIICKDRGPCYQKKVTCPARCFSSFSHSXXXXXXXXXXXGCNIDCKNKCIAYC 225
            R GV  PT+ C ++GPCY+KKVTCP +CFSS+S +            C +DCK KC AYC
Sbjct:  106 RGGVVAPTVTCSEKGPCYRKKVTCPKKCFSSYSGAGKGYGGGGGGGSCTVDCKVKCTAYC 165

[Close]

BLAST of GR410116 vs. TAIR peptide
Match: AT4G21620.2 (| Symbols: | glycine-rich protein | chr4:11491519-11491914 FORWARD LENGTH=98)

HSP 1 Score: 77.0258 bits (188), Expect = 5.433e-15
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = -2

Query:   46 RNGVTRPTIICKDRGPCYQKKVTCPARCFSSFSHSXXXXXXXXXXXGCNIDCKNKCIAYC 225
            + GV RPT+ CK++GPC  KK+ CPA+CF SFS S           GC +DCK KCIAYC
Sbjct:   39 KGGVVRPTVTCKEKGPCNGKKLRCPAKCFKSFSRSGKGYGGGGGGGGCTMDCKKKCIAYC 98

[Close]

BLAST of GR410116 vs. TAIR peptide
Match: AT4G21620.1 (| Symbols: | glycine-rich protein | chr4:11491519-11491914 FORWARD LENGTH=131)

HSP 1 Score: 77.0258 bits (188), Expect = 5.433e-15
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = -2

Query:   46 RNGVTRPTIICKDRGPCYQKKVTCPARCFSSFSHSXXXXXXXXXXXGCNIDCKNKCIAYC 225
            + GV RPT+ CK++GPC  KK+ CPA+CF SFS S           GC +DCK KCIAYC
Sbjct:   72 KGGVVRPTVTCKEKGPCNGKKLRCPAKCFKSFSRSGKGYGGGGGGGGCTMDCKKKCIAYC 131

[Close]

BLAST of GR410116 vs. TAIR peptide
Match: AT1G61255.1 (| Symbols: | BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G21620.2); Has 58 Blast hits to 58 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:22589260-22589691 REVERSE LENGTH=143)

HSP 1 Score: 58.9214 bits (141), Expect = 1.531e-9
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = -2

Query:   46 RPTIICKDRGPCYQKKVTCPARCFSSFSHSXXXXXXXXXXXGCNIDCKNKCIAYC 210
            R T++C+++G CY KK+TCPA+CF S S             GC IDCK KC+AYC
Sbjct:   92 RLTVMCEEKGHCYMKKLTCPAKCFKSLSRK--GKGYGGGGGGCTIDCK-KCVAYC 143

The following BLAST results are available for this feature:

BLAST of GR410116 vs. TrEMBL
BLAST of GR410116 vs. TAIR peptide

BLAST of GR410116 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6SVW2_SOYBN	7.558e-17	61.67	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6TKQ7_SOYBN	1.289e-16	60.00	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9S5Z9_RICCO	5.416e-15	53.33	Nucleic acid binding protein, putative OS=Ricinus ...	[more]
B9HYY5_POPTR	1.576e-14	51.67	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q9FRF5_ORYSJ	2.688e-14	56.67	Expressed protein OS=Oryza sativa subsp. japonica ...	[more]
A2XKL2_ORYSI	2.688e-14	56.67	Putative uncharacterized protein OS=Oryza sativa s...	[more]
D7MER6_ARALY	1.334e-13	53.33	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
B9H241_POPTR	1.334e-13	55.00	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q9SVT5_ARATH	6.621e-13	53.33	AT4g21620/F17L22_80 OS=Arabidopsis thaliana GN=AT4...	[more]
C4J5G4_MAIZE	1.129e-12	50.00	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]

BLAST of GR410116 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
AT4G21620.2	5.433e-15	53.33	\| Symbols: \| glycine-rich protein \| chr4:11491519...	[more]
AT4G21620.1	5.433e-15	53.33	\| Symbols: \| glycine-rich protein \| chr4:11491519...	[more]
AT1G61255.1	1.531e-9	49.09	\| Symbols: \| BEST Arabidopsis thaliana protein ma...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 16..32 score
None	No IPR available	SEG	seg	seg	coord: 3..15 score: NAcoord: 25..36 score
None	No IPR available	SEG	seg	seg	coord: 3..16 score: NAcoord: 17..84 score: NAcoord: 120..131 score
None	No IPR available	SEG	seg	seg	coord: 11..28 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR410116 ID=GR410116; Name=GR410116; organism=Cicer arietinum; type=EST; length=478bp
CAAAAGTTAAACTCGCACACTAATATATAGTAGTGGCTTCCCTCAACAAT
AAGCGATACATTTATTTTTGCAATCAATGTTACAGCCGCCACCTCCGCCT
CCACCACCGTAACCCTTGCCAGAGTGACTGAAGGAAGAAAAACACCTTGC
TGGACACGTCACCTTCTTCTGATAACAAGGGCCTCTGTCTTTGCAAATAA
TAGTAGGCCTAGTTACACCATTTCTTGAGTAGCCACCATTTGGAGTTCCA
TAACCACTTCCATATCCTCCTCCTATGTTGTTCCCAAAACCTGGTATGCT
AAAACTTCCTCCTGGTCCAAATCCAAAGGAACCACCGTAATCATTGCCTC
CACCTTTGTTGTTGTTGTTCTCACTAGATGGTGAAGGTTTGGTAGTTGAT
GATGTGGATCTGCGAGAGGACACAGAGGTAGTAACTGTTAGCAACACAAT
GAACAAAATAAGGAGGGTTATGTGTTTC

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