GR410120

EST Overview
NameGR410120
Unique NameGR410120
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length754
Libraries
Library NameType
LIBEST_024779 ICC1882 Slow drought stressed root cDNA librarycdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Homology
BLAST of GR410120 vs. SwissProt
Match: IF2_THEFY (Translation initiation factor IF-2 OS=Thermobifida fusca (strain YX) GN=infB PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 6.131e-8
Identity = 43/139 (30.94%), Postives = 52/139 (37.41%), Query Frame = 1
Query:   58 KGGQKKTPKFPKPNKRSPA*H*TRSSTQKGNIKGKKA--KPPKAHSPCPREPPKTRKKPAPRGETSKFPPRTKNPGQGPRGTGEPYEKKAKCPIPKKGPGQGKNPQNKKGEF*RKKNQPGKRTLGET-----NPTPFPG 453
            KGGQ+K    PKP   SP      S+   G    + A  KP     P PR  PK   +P PR E      +      G +G   P   K   P+PK GP  G NP +        +  P     G T      P P PG
Sbjct:   61 KGGQEKKKPSPKPQP-SPQQQTKASAPSAGGETPRPAVPKPGPGLKPGPRPVPKPGPRPGPRPEGGA--GKAGQQPSGAQGPARPESGKTPRPVPKPGPRPGNNPFSSTASGMGTRPTPRPPASGGTGAPRPGPRPHPG 196          

HSP 2 Score: 25.7942 bits (55), Expect = 6.131e-8
Identity = 17/52 (32.69%), Postives = 21/52 (40.38%), Query Frame = 3
Query:  534 RPPAGPPYGKTPHPVEA--KPEDSKGAPKKPGGNTGQTGSRGKMVSRPQSPP 683
            RP A  P    P P  A  +P  S G P +P    G   S   M +   +PP
Sbjct:  211 RPQAPRPQAPRPGPGTAGGRPGSSAGGPPRPVPRPGPRPSPMNMPASRPTPP 262          
BLAST of GR410120 vs. TAIR peptide
Match: AT2G28671.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:12300816-12301715 FORWARD LENGTH=299)

HSP 1 Score: 44.2838 bits (103), Expect = 6.664e-7
Identity = 29/97 (29.90%), Postives = 34/97 (35.05%), Query Frame = 1
Query:  166 AKPPKAHSPCPREPPKTRKKPAP--RGETSKFPPRTKNPGQGPRGTGEPYEKKAKCPIPKKGPGQGKNPQNKKGEF*RKKNQPGKRTLGETNPTPFP 450
            A PP    P P  PP+    PAP  R   +  PP    P  GP    EP    A    P  G      P  + G       +PG   L   +P P P
Sbjct:  126 APPPPRAEPAPAPPPRAGPAPAPPPRAGPAPAPPPRAEPAPGPPPRAEPVPAPAPVAEPVVGKEPEPPPAKEPGTELAVGRRPGPEPLDGIDPVPAP 222          

HSP 2 Score: 26.5646 bits (57), Expect = 6.664e-7
Identity = 15/36 (41.67%), Postives = 18/36 (50.00%), Query Frame = 3
Query:  510 PA*TPMKSRP-PAGPPYGKTPHPVEAKPEDSKGAPK 614
            PA  P+   P P  P     P+PVE +P D   APK
Sbjct:  220 PAPRPLPVEPEPDDPDPAPKPNPVEPEPLDPVPAPK 255          
The following BLAST results are available for this feature:
BLAST of GR410120 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
IF2_THEFY6.131e-830.94Translation initiation factor IF-2 OS=Thermobifida... [more]
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BLAST of GR410120 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G28671.16.664e-729.90| Symbols: | unknown protein; FUNCTIONS IN: molec... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 2..14
score
NoneNo IPR availableSEGsegsegcoord: 14..30
score
NoneNo IPR availableSEGsegsegcoord: 59..76
score
NoneNo IPR availableSEGsegsegcoord: 25..41
score
NoneNo IPR availableSEGsegsegcoord: 60..74
score
NoneNo IPR availableSEGsegsegcoord: 4..26
score
NoneNo IPR availableSEGsegsegcoord: 1..18
score: NAcoord: 25..42
score
NoneNo IPR availableSEGsegsegcoord: 62..78
score: NAcoord: 86..102
score: NAcoord: 125..142
score

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR410120 ID=GR410120; Name=GR410120; organism=Cicer arietinum; type=EST; length=754bp
AGGTTAAAAAGCCCCAAACCCCAAGGCCTTATTGAAAGCCACCATTACCT
GCAATTTAAGGGGGGGCAAAAAAAAACCCCCAAATTTCCAAAGCCAAACA
AAAGGAGCCCGGCCTAACATTAAACCAGAAGTTCCACCCAAAAAGGAAAT
ATTAAGGGGAAAAAAGCAAAACCACCTAAAGCCCATTCCCCTTGCCCAAG
GGAACCCCCTAAGACCAGGAAAAAACCTGCCCCCCGGGGTGAAACAAGCA
AGTTCCCCCCCCGGACCAAAAACCCCGGTCAGGGACCCCGTGGGACCGGG
GAACCCTATGAAAAAAAGGCCAAATGCCCCATACCAAAGAAAGGACCTGG
CCAAGGGAAAAATCCCCAAAACAAGAAGGGTGAATTTTGAAGAAAAAAAA
ACCAACCGGGAAAAAGAACCCTAGGGGAAACCAACCCAACCCCGTTTCCT
GGATATCCTGGAAAAAAACAAAACCACCCCCAAAAGCCCCCGCACCCCGC
GGTGAAAACCCCGCTTAAACCCCAATGAAATCCCGGCCCCCCGCCGGGCC
ACCCTATGGGAAAACCCCCCACCCGGTGGAGGCAAAACCTGAGGATTCCA
AAGGGGCACCCAAAAAGCCTGGCGGAAACACGGGCCAAACGGGTTCCCGG
GGGAAAATGGTATCCCGCCCCCAATCCCCCCCACACAACGAACCCGGAAA
CAAAAGGGGAAAGCCCGGGGGGCCCCAAGGAGGGGGCCCACCCCCCATAA
TTGC
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