AM161978

EST Overview
NameAM161978
Unique NameAM161978
TypeEST
OrganismPisum sativum (pea)
Sequence length252
Libraries
Library NameType
LIBEST_019360 Pisum sativum leaf vegetativecdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
KEGG analysis for Pisum sativum unigene v12011-01-05
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Homology
BLAST of AM161978 vs. TrEMBL
Match: Q2PEU1_TRIPR (Putative uncharacterized protein OS=Trifolium pratense PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.611e-22
Identity = 56/77 (72.73%), Postives = 59/77 (76.62%), Query Frame = 3
Query:   21 MALQGKLDRFKKQQEKCQXXXXXXXXXXXXXXXMPTSLVPVKFSTDTERLQHINSIRKAPVGAQMKRVIDLLYETRQ 251
            MALQGKLDRFKKQQEKC                +P+ LVPVKFS DTERLQHINSIRKAPVGAQMKRVIDLL+ETRQ
Sbjct:    1 MALQGKLDRFKKQQEKCASTLSSIAASKAASSAVPSPLVPVKFSNDTERLQHINSIRKAPVGAQMKRVIDLLFETRQ 77          
BLAST of AM161978 vs. TrEMBL
Match: C6TCR2_SOYBN (Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.554e-16
Identity = 51/86 (59.30%), Postives = 53/86 (61.63%), Query Frame = 3
Query:   21 MALQGKLDRFKKQQEKCQXXXXXXXXXXXXXXXMPTS---------LVPVKFSTDTERLQHINSIRKAPVGAQMKRVIDLLYETRQ 251
            MALQ KLD+FKKQQEKCQ                  +            VKFS DTERLQHINSIRKAPVGAQMKRVIDLL ETRQ
Sbjct:    1 MALQEKLDKFKKQQEKCQTTLSSIAASKAAATQKSAAHGSANGRNAAPAVKFSNDTERLQHINSIRKAPVGAQMKRVIDLLLETRQ 86          
BLAST of AM161978 vs. TrEMBL
Match: B7FIV7_MEDTR (Putative uncharacterized protein (Fragment) OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.253e-15
Identity = 51/90 (56.67%), Postives = 55/90 (61.11%), Query Frame = 3
Query:   21 MALQGKLDRFKKQQEKCQXXXXXXXXXXXXXXXMPTSLVP-------------VKFSTDTERLQHINSIRKAPVGAQMKRVIDLLYETRQ 251
            MALQ +LDRFKKQQEKCQ                 T +V              VKFS+DTERLQ IN+IRKAPVGAQMKRVIDLL ETRQ
Sbjct:    1 MALQEQLDRFKKQQEKCQSTLSSIASSKVGSRKPNTPVVATNASANGRNSRTGVKFSSDTERLQQINNIRKAPVGAQMKRVIDLLLETRQ 90          
BLAST of AM161978 vs. TrEMBL
Match: B9GKK9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_640520 PE=4 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.548e-15
Identity = 50/92 (54.35%), Postives = 53/92 (57.61%), Query Frame = 3
Query:   21 MALQGKLDRFKKQQEKCQXXXXXXXXXXXXXXXMPTSLVPV---------------KFSTDTERLQHINSIRKAPVGAQMKRVIDLLYETRQ 251
            MALQ +LDRFKKQQEKCQ               +    V V               KFS DTERLQHINSIRKAP GAQ+KRVIDLL ETRQ
Sbjct:    1 MALQEQLDRFKKQQEKCQSTLTSIAKSRPSKSSLTQKTVAVAPAPSTSARTPAPAVKFSNDTERLQHINSIRKAPAGAQIKRVIDLLLETRQ 92          
BLAST of AM161978 vs. TrEMBL
Match: D7SPJ4_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_23.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00019026001 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.464e-15
Identity = 50/88 (56.82%), Postives = 54/88 (61.36%), Query Frame = 3
Query:   21 MALQGKLDRFKKQQEKCQXXXXXXXXXXXXXXX-MPTSLVP----------VKFSTDTERLQHINSIRKAPVGAQMKRVIDLLYETRQ 251
            MALQ  L +FKKQQEKCQ                +P +  P          VKFS DTERLQHINSIRKAPVGAQ+KRVIDLL ETRQ
Sbjct:    1 MALQESLAKFKKQQEKCQSTLTSIAAKAVSSKPSVPQNFTPAAPTKPPTPAVKFSNDTERLQHINSIRKAPVGAQIKRVIDLLLETRQ 88          
BLAST of AM161978 vs. TrEMBL
Match: D7TW30_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_25.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00019802001 PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.236e-14
Identity = 50/88 (56.82%), Postives = 53/88 (60.23%), Query Frame = 3
Query:   21 MALQGKLDRFKKQQEKCQXXXXXXXXXXXXXXX-MPTSLVP----------VKFSTDTERLQHINSIRKAPVGAQMKRVIDLLYETRQ 251
            MALQ  L +FKKQQEKCQ                +P    P          VKFS DTERLQHINSIRKAPVGAQ+KRVIDLL ETRQ
Sbjct:    1 MALQESLAKFKKQQEKCQSTLTSIAAKAGSSKPTVPQKFTPAAPTKPPTPAVKFSNDTERLQHINSIRKAPVGAQIKRVIDLLLETRQ 88          
BLAST of AM161978 vs. TrEMBL
Match: B9RC71_RICCO (Transcription initiation factor IIE subunit beta, putative OS=Ricinus communis GN=RCOM_1686000 PE=4 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.596e-14
Identity = 47/90 (52.22%), Postives = 57/90 (63.33%), Query Frame = 3
Query:   21 MALQGKLDRFKKQQEKCQXXXXXXXXXXXXXXXM-------PTSLVP------VKFSTDTERLQHINSIRKAPVGAQMKRVIDLLYETRQ 251
            M LQ +L++FK+QQEKCQ                       P+ ++P      VKFS DTERLQHI+SIRKAPVGAQ+KRVIDLL+ETRQ
Sbjct:    1 MDLQEQLNKFKRQQEKCQTTLTSIAAKAGSHKPSITPKIVAPSPIIPRTPGPAVKFSNDTERLQHIHSIRKAPVGAQIKRVIDLLFETRQ 90          
BLAST of AM161978 vs. TrEMBL
Match: C6TE63_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.044e-13
Identity = 43/77 (55.84%), Postives = 49/77 (63.64%), Query Frame = 3
Query:   21 MALQGKLDRFKKQQEKCQXXXXXXXXXXXXXXXMPTSLVPVKFSTDTERLQHINSIRKAPVGAQMKRVIDLLYETRQ 251
            MA Q K +RFK+Q EK                       P+KFS DTERLQH+NSIRKAPVGAQMKRVIDLL+ETR+
Sbjct:    1 MAFQEKQNRFKRQPEKSASASQYGRTP-----------APIKFSNDTERLQHVNSIRKAPVGAQMKRVIDLLFETRK 66          
BLAST of AM161978 vs. TrEMBL
Match: Q9SUP3_ARATH (AT4g20330/F9F13_2 OS=Arabidopsis thaliana GN=AT4g20330 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.858e-13
Identity = 45/89 (50.56%), Postives = 55/89 (61.80%), Query Frame = 3
Query:   21 MALQGKLDRFKKQQEKCQXXXXXXXXXXXXXXX------MPTSLV-------PVKFSTDTERLQHINSIRKAPVGAQMKRVIDLLYETR 248
            MAL+ +LD+F KQQ KCQ                     +P ++        PVKFS+DTERLQ+IN+IRKAPVGAQ+KRVIDLLYE R
Sbjct:    1 MALKEQLDKFNKQQVKCQSTLSSIASSRERTSSSRQNVPLPAAITQKKPDAAPVKFSSDTERLQNINNIRKAPVGAQIKRVIDLLYERR 89          
BLAST of AM161978 vs. TrEMBL
Match: D7MFK5_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_492835 PE=4 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.366e-12
Identity = 44/89 (49.44%), Postives = 52/89 (58.43%), Query Frame = 3
Query:   21 MALQGKLDRFKKQQEKCQXXXXXXXXXXXXXXXMPTSL-------------VPVKFSTDTERLQHINSIRKAPVGAQMKRVIDLLYETR 248
            MAL+ +LD+F KQQ KCQ                  S+              PVKFS DTERLQ+IN+IRKAPVGAQ+KRVIDLL+E R
Sbjct:    1 MALKEQLDKFNKQQVKCQSTLSSIASSRERTGSSRQSVPLPAAISQKKPDAAPVKFSNDTERLQNINNIRKAPVGAQIKRVIDLLFEKR 89          
BLAST of AM161978 vs. TAIR peptide
Match: AT4G20330.1 (| Symbols: | Transcription initiation factor TFIIE, beta subunit | chr4:10982683-10984039 REVERSE LENGTH=286)

HSP 1 Score: 76.6406 bits (187), Expect = 3.439e-15
Identity = 45/89 (50.56%), Postives = 55/89 (61.80%), Query Frame = 3
Query:   21 MALQGKLDRFKKQQEKCQXXXXXXXXXXXXXXX------MPTSLV-------PVKFSTDTERLQHINSIRKAPVGAQMKRVIDLLYETR 248
            MAL+ +LD+F KQQ KCQ                     +P ++        PVKFS+DTERLQ+IN+IRKAPVGAQ+KRVIDLLYE R
Sbjct:    1 MALKEQLDKFNKQQVKCQSTLSSIASSRERTSSSRQNVPLPAAITQKKPDAAPVKFSSDTERLQNINNIRKAPVGAQIKRVIDLLYERR 89          
BLAST of AM161978 vs. TAIR peptide
Match: AT4G21010.1 (| Symbols: | Transcription initiation factor TFIIE, beta subunit | chr4:11226317-11227363 REVERSE LENGTH=275)

HSP 1 Score: 62.3882 bits (150), Expect = 6.712e-11
Identity = 39/88 (44.32%), Postives = 50/88 (56.82%), Query Frame = 3
Query:   21 MALQGKLDRFKKQQEKCQXXXXXXXXXXXXXXXMPTSLVPV------------KFSTDTERLQHINSIRKAPVGAQMKRVIDLLYETR 248
            MAL+ +LD+F KQQEKCQ               +  S VP             KFS +T++LQHI +IR + VGAQMK VIDLL++TR
Sbjct:    1 MALREQLDKFNKQQEKCQSTLSSISSSRTA---LSRSYVPAATTSQKPNVFRGKFSENTKQLQHITNIRNSAVGAQMKIVIDLLFKTR 85          
The following BLAST results are available for this feature:
BLAST of AM161978 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
Q2PEU1_TRIPR1.611e-2272.73Putative uncharacterized protein OS=Trifolium prat... [more]
C6TCR2_SOYBN6.554e-1659.30Putative uncharacterized protein (Fragment) OS=Gly... [more]
B7FIV7_MEDTR3.253e-1556.67Putative uncharacterized protein (Fragment) OS=Med... [more]
B9GKK9_POPTR5.548e-1554.35Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7SPJ4_VITVI9.464e-1556.82Whole genome shotgun sequence of line PN40024, sca... [more]
D7TW30_VITVI1.236e-1456.82Whole genome shotgun sequence of line PN40024, sca... [more]
B9RC71_RICCO3.596e-1452.22Transcription initiation factor IIE subunit beta, ... [more]
C6TE63_SOYBN3.044e-1355.84Putative uncharacterized protein OS=Glycine max PE... [more]
Q9SUP3_ARATH8.858e-1350.56AT4g20330/F9F13_2 OS=Arabidopsis thaliana GN=AT4g2... [more]
D7MFK5_ARALY3.366e-1249.44Putative uncharacterized protein OS=Arabidopsis ly... [more]
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BLAST of AM161978 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT4G20330.13.439e-1550.56| Symbols: | Transcription initiation factor TFII... [more]
AT4G21010.16.712e-1144.32| Symbols: | Transcription initiation factor TFII... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 25..39
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>AM161978 ID=AM161978; Name=AM161978; organism=Pisum sativum; type=EST; length=252bp
CTCTCACGAACTCACTCACGATGGCGTTACAAGGAAAGCTCGATAGATTC
AAAAAGCAGCAGGAGAAATGTCAAACAACCCTATCGAGCATAGCAGCTAC
CAAGACTGCATCTGCATCAATGCCGACTTCTCTTGTTCCTGTCAAATTCT
CAACTGATACGGAGAGGCTTCAGCATATTAACAGTATACGTAAAGCTCCT
GTTGGAGCTCAGATGAAGCGTGTTATTGATCTTCTTTATGAGACTCGGCA
GG
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