GT618976
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EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GT618976 vs. TrEMBL
Match: D7SI41_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00007911001 PE=4 SV=1) HSP 1 Score: 336.65 bits (862), Expect = 1.438e-90 Identity = 167/250 (66.80%), Postives = 193/250 (77.20%), Query Frame = 3
Query: 3 RRSNAAEQDDIHSLRKFSXXXXXXXXXXXXXXXXXXXXXXXQYLFEGVKLSEVEQRELRHKKELYELIKKRSEEADNVNEYRMPDAYDQEGGVNQEKRFSVAMQRYRDTHAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKQASDDYQYVFEDQIDFIKASVMDGDEFDYDEMEDSIXXXXXXXXXXXLQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
RRSNA E+DDI +LRK S QYLF+GVKL+E EQRELR+K+E+Y+L+KKRSEE D++NEYRMPDAYDQEGGVNQEKRFSVA+QRYRD+ A +KMNPFAEQEAWEEHQIGKATLK+GSK+K Q SDDYQ VFEDQI+FIKASVMDGD+F+ +S LQ +RK LPIY YRDELLKAV+ +Q+LVIVGETGSGKTTQIPQYLHE+GYTK G + CTQP
Sbjct: 219 RRSNAMEEDDISALRKVSRQEYLKKREQKKLEELRDDIEDEQYLFDGVKLTEAEQRELRYKREIYDLVKKRSEETDDINEYRMPDAYDQEGGVNQEKRFSVALQRYRDSSANDKMNPFAEQEAWEEHQIGKATLKFGSKDKNQKSDDYQLVFEDQIEFIKASVMDGDKFEDGLFAESHDDSVAKSELEKLQEDRKMLPIYPYRDELLKAVDDHQILVIVGETGSGKTTQIPQYLHESGYTKRGKVGCTQP 468
BLAST of GT618976 vs. TrEMBL
Match: Q8VY00_ARATH (Putative RNA helicase OS=Arabidopsis thaliana GN=At1g32490 PE=1 SV=1) HSP 1 Score: 306.22 bits (783), Expect = 2.082e-81 Identity = 156/251 (62.15%), Postives = 186/251 (74.10%), Query Frame = 3
Query: 3 RRSNAAEQDDIHSLRKFSXXXXXXXXXXXXXXXXXXXXXXXQYLFEGVKLSEVEQRELRHKKELYELIKKRSEEADNVNEYRMPDAYDQEGGVNQEKRFSVAMQRYRDTHAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKQASDDYQYVFEDQIDFIKASVMDGDEF-DYDEMEDSIXXXXXXXXXXXLQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
RR+NA E+DD++SLRK S QYLF G KL+E E RE R+KKELY+L+KKR+++ DNV EYR+PDAYDQEGGV+QEKRFSVA+QRYRD + EKMNPFAEQEAWE+HQIGKATLK+G+KN KQASDDYQ+VFEDQI+FIK SVM G+ + D + + LQ R+ LPIY YRD+LLKAV ++QVLVIVG+TGSGKTTQIPQYLHEAGYTK G + CTQP
Sbjct: 208 RRANALEKDDLYSLRKVSRQEYLKKREQKKLDELRDEIEDEQYLFGGEKLTETELREFRYKKELYDLVKKRTQDEDNVEEYRIPDAYDQEGGVDQEKRFSVAVQRYRDLDSTEKMNPFAEQEAWEDHQIGKATLKFGAKN-KQASDDYQFVFEDQINFIKESVMAGENYEDAMDAKQKSQDLAEKTALEELQEVRRSLPIYTYRDQLLKAVEEHQVLVIVGDTGSGKTTQIPQYLHEAGYTKRGKVGCTQP 457
BLAST of GT618976 vs. TrEMBL
Match: B9S9P4_RICCO (ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_0506620 PE=4 SV=1) HSP 1 Score: 288.115 bits (736), Expect = 5.866e-76 Identity = 149/250 (59.60%), Postives = 176/250 (70.40%), Query Frame = 3
Query: 3 RRSNAAEQDDIHSLRKFSXXXXXXXXXXXXXXXXXXXXXXXQYLFEGVKLSEVEQRELRHKKELYELIKKRSEEADNVNEYRMPDAYDQEGGVNQEKRFSVAMQRYRDTHAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKQASDDYQYVFEDQIDFIKASVMDGDEFDYDEMEDSIXXXXXXXXXXXLQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
RRS+ E+D I +LRK S QYLF+GVKL+E E RE+R+KKELYELIKK+SE+AD+ NE EKRF+ A+QRYRD +A +KMNPFAEQEAWE++QIGKATLK+GSKNKKQ SDDYQ+VFEDQI+FIKASVMDGD+FD +S+ +Q +RK LPIY YRDELL A+ K+QVLVIVGETGSGKTTQIPQYLHEAGYTK G + CTQP
Sbjct: 218 RRSHVLEEDGIGTLRKVSRQEYLKKREQKKLEELRDDIEDEQYLFDGVKLTEAELREIRYKKELYELIKKKSEDADDTNE---------------EKRFAAALQRYRDPNAGDKMNPFAEQEAWEDYQIGKATLKFGSKNKKQISDDYQFVFEDQIEFIKASVMDGDKFDDQLPAESLDNSMEKSAFEKIQEDRKSLPIYKYRDELLAAIEKFQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKVGCTQP 452
BLAST of GT618976 vs. TrEMBL
Match: Q6YUI7_ORYSJ (RNA helicase-like OS=Oryza sativa subsp. japonica GN=OSJNBb0076O03.29 PE=4 SV=1) HSP 1 Score: 286.96 bits (733), Expect = 1.307e-75 Identity = 141/254 (55.51%), Postives = 183/254 (72.05%), Query Frame = 3
Query: 3 RRSNAAEQDDIHSLRKFSXXXXXXXXXXXXXXXXXXXXXXXQYLFEGVKLSEVEQRELRHKKELYELIKKRSEEADNVNEYRMPDAYDQEGGVNQEKRFSVAMQRYRDTHAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKQASDDYQYVFEDQIDFIKASVMDG----DEFDYDEMEDSIXXXXXXXXXXXLQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
RRS A +++D LRKFS +Y+F+ VKL+E E++E R+KK++Y+L+K+ E AD+V EY+MP+AYD VNQEKRFSVAMQRY+D A +KMNPFAEQEAWEEHQIGK+ L++GSK++K++SDDYQYVFED IDF+K+SV++G ++ D +++++ Q ERK LPIY +RDELLKAV +YQV+VIVGETGSGKTTQIPQYLHEAGYT G +ACTQP
Sbjct: 217 RRSQAMDKNDTSDLRKFSRQAYLQKRRDKKIDEIRDEILDHEYIFQDVKLTEAEEKEFRYKKKIYDLVKEHVESADDVAEYKMPEAYDMGDSVNQEKRFSVAMQRYKDPEARDKMNPFAEQEAWEEHQIGKSKLQFGSKDRKRSSDDYQYVFEDGIDFVKSSVIEGTQHEEDSDQEDIDEKDMLKRELQHVSLNQDERKTLPIYKFRDELLKAVEEYQVIVIVGETGSGKTTQIPQYLHEAGYTAKGKVACTQP 470
BLAST of GT618976 vs. TrEMBL
Match: B9G0E3_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_26936 PE=4 SV=1) HSP 1 Score: 286.96 bits (733), Expect = 1.307e-75 Identity = 141/254 (55.51%), Postives = 183/254 (72.05%), Query Frame = 3
Query: 3 RRSNAAEQDDIHSLRKFSXXXXXXXXXXXXXXXXXXXXXXXQYLFEGVKLSEVEQRELRHKKELYELIKKRSEEADNVNEYRMPDAYDQEGGVNQEKRFSVAMQRYRDTHAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKQASDDYQYVFEDQIDFIKASVMDG----DEFDYDEMEDSIXXXXXXXXXXXLQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
RRS A +++D LRKFS +Y+F+ VKL+E E++E R+KK++Y+L+K+ E AD+V EY+MP+AYD VNQEKRFSVAMQRY+D A +KMNPFAEQEAWEEHQIGK+ L++GSK++K++SDDYQYVFED IDF+K+SV++G ++ D +++++ Q ERK LPIY +RDELLKAV +YQV+VIVGETGSGKTTQIPQYLHEAGYT G +ACTQP
Sbjct: 217 RRSQAMDKNDTSDLRKFSRQAYLQKRRDKKIDEIRDEILDHEYIFQDVKLTEAEEKEFRYKKKIYDLVKEHVESADDVAEYKMPEAYDMGDSVNQEKRFSVAMQRYKDPEARDKMNPFAEQEAWEEHQIGKSKLQFGSKDRKRSSDDYQYVFEDGIDFVKSSVIEGTQHEEDSDQEDIDEKDMLKRELQHVSLNQDERKTLPIYKFRDELLKAVEEYQVIVIVGETGSGKTTQIPQYLHEAGYTAKGKVACTQP 470
BLAST of GT618976 vs. TrEMBL
Match: B8B9U1_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_28838 PE=4 SV=1) HSP 1 Score: 286.96 bits (733), Expect = 1.307e-75 Identity = 141/254 (55.51%), Postives = 183/254 (72.05%), Query Frame = 3
Query: 3 RRSNAAEQDDIHSLRKFSXXXXXXXXXXXXXXXXXXXXXXXQYLFEGVKLSEVEQRELRHKKELYELIKKRSEEADNVNEYRMPDAYDQEGGVNQEKRFSVAMQRYRDTHAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKQASDDYQYVFEDQIDFIKASVMDG----DEFDYDEMEDSIXXXXXXXXXXXLQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
RRS A +++D LRKFS +Y+F+ VKL+E E++E R+KK++Y+L+K+ E AD+V EY+MP+AYD VNQEKRFSVAMQRY+D A +KMNPFAEQEAWEEHQIGK+ L++GSK++K++SDDYQYVFED IDF+K+SV++G ++ D +++++ Q ERK LPIY +RDELLKAV +YQV+VIVGETGSGKTTQIPQYLHEAGYT G +ACTQP
Sbjct: 217 RRSQAMDKNDTSDLRKFSRQAYLQKRRDKKIDEIRDEILDHEYIFQDVKLTEAEEKEFRYKKKIYDLVKEHVESADDVAEYKMPEAYDMGDSVNQEKRFSVAMQRYKDPEARDKMNPFAEQEAWEEHQIGKSKLQFGSKDRKRSSDDYQYVFEDGIDFVKSSVIEGTQHEEDSDQEDIDEKDMLKRELQHVSLNQDERKTLPIYKFRDELLKAVEEYQVIVIVGETGSGKTTQIPQYLHEAGYTAKGKVACTQP 470
BLAST of GT618976 vs. TrEMBL
Match: Q0WVI8_ARATH (Putative pre-mRNA splicing factor RNA helicase OS=Arabidopsis thaliana GN=At2g35340 PE=2 SV=1) HSP 1 Score: 282.337 bits (721), Expect = 3.219e-74 Identity = 144/250 (57.60%), Postives = 175/250 (70.00%), Query Frame = 3
Query: 3 RRSNAAEQDDIHSLRKFSXXXXXXXXXXXXXXXXXXXXXXXQYLFEGVKLSEVEQRELRHKKELYELIKKRSEEADNVNEYRMPDAYDQEGGVNQEKRFSVAMQRYRDTHAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKQASDDYQYVFEDQIDFIKASVMDGDEFDYDEMEDSIXXXXXXXXXXXLQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
RR +A ++ DI SLRKFS YLF KL+E E RE R+K+E+YELIKK ++E DNV EYRMPDAYDQ+G V+QEKRF+V++QRYRD + EKMNPFAEQEAWE+HQI A LK+G+KN K+ SD+Y++VFEDQIDFIKASV+ GD ++ + LQ +RK LPIY YRD+LL AV +QVL+IVGETGSGKTTQIPQYLHEAGYTK G + CTQP
Sbjct: 209 RRDSAVDKGDIESLRKFSWQEYMKKRKQKKVLELKDDIEDEPYLFGDEKLTEREIREFRYKREIYELIKKSTQEEDNVGEYRMPDAYDQQGSVDQEKRFAVSVQRYRDMGSAEKMNPFAEQEAWEDHQIENAALKFGAKN-KEVSDNYEFVFEDQIDFIKASVLAGDNYEDEMHAKPSQDSAGKSAFHMLQEDRKALPIYTYRDQLLNAVKDHQVLIIVGETGSGKTTQIPQYLHEAGYTKLGKVGCTQP 457
BLAST of GT618976 vs. TrEMBL
Match: C5XU69_SORBI (Putative uncharacterized protein Sb04g022460 OS=Sorghum bicolor GN=Sb04g022460 PE=4 SV=1) HSP 1 Score: 281.952 bits (720), Expect = 4.204e-74 Identity = 141/250 (56.40%), Postives = 179/250 (71.60%), Query Frame = 3
Query: 3 RRSNAAEQDDIHSLRKFSXXXXXXXXXXXXXXXXXXXXXXXQYLFEGVKLSEVEQRELRHKKELYELIKKRSEEADNVNEYRMPDAYDQEGGVNQEKRFSVAMQRYRDTHAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKQASDDYQYVFEDQIDFIKASVMDGDEFDYDEMEDSIXXXXXXXXXXXLQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
RRS A +++D LRKFS QY+F+ VKL+E E++EL +K +LY L+K+ E D+V EY+MP+AYD VNQEKRFSVAMQRY+D A++KMNPFAEQEAWEEHQIGK+ L++GSK+KK +SD+YQYVFED IDF+K+SV++G + + D ++ + LQ ERK LPI+ +RDELLKAV +YQV+VIVGETGSGKTTQIPQYLHEAGYT G +ACTQP
Sbjct: 247 RRSQAMDKNDTSDLRKFSRQAYLQKRRDKKIEEIRDEILDHQYIFQDVKLTEAEEKELSYKMKLYGLVKEHVETPDDVGEYKMPEAYDMGENVNQEKRFSVAMQRYKDPEAKDKMNPFAEQEAWEEHQIGKSKLRFGSKDKKTSSDEYQYVFEDTIDFVKSSVIEGTQPEDDSDKEDV--EAKDILKRELQDERKTLPIFKFRDELLKAVEEYQVIVIVGETGSGKTTQIPQYLHEAGYTAKGKVACTQP 494
BLAST of GT618976 vs. TrEMBL
Match: C5XGK1_SORBI (Putative uncharacterized protein Sb03g010540 OS=Sorghum bicolor GN=Sb03g010540 PE=4 SV=1) HSP 1 Score: 277.33 bits (708), Expect = 1.036e-72 Identity = 139/250 (55.60%), Postives = 178/250 (71.20%), Query Frame = 3
Query: 3 RRSNAAEQDDIHSLRKFSXXXXXXXXXXXXXXXXXXXXXXXQYLFEGVKLSEVEQRELRHKKELYELIKKRSEEADNVNEYRMPDAYDQEGGVNQEKRFSVAMQRYRDTHAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKQASDDYQYVFEDQIDFIKASVMDGDEFDYDEMEDSIXXXXXXXXXXXLQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
RRS A +++D LRKFS QY+F+ VKL+E E++ELR+K ++Y+L+K+ E D+V EY+MP+AYD VNQEKRFSVAMQRY+D A++KMNPFAEQEAW EHQIGK+ L++GSK+KK +SD+YQYVFED IDF+K+SV+ G + + D ++ I LQ ERK LP++ + DELLKAV +YQV+VIVGETGSGKTTQIPQYLHEAGYT G +ACTQP
Sbjct: 212 RRSQAMDKNDTSDLRKFSRQAYLQKRRDKKIEEIRDEILDHQYIFQDVKLTEAEEKELRYKMKIYDLVKEHVETPDDVGEYKMPEAYDMGENVNQEKRFSVAMQRYKDPEAKDKMNPFAEQEAWGEHQIGKSKLQFGSKDKKPSSDEYQYVFEDTIDFVKSSVIVGTQPEDDSDKEDI--EAKDILKRELQDERKTLPVFKFGDELLKAVEEYQVIVIVGETGSGKTTQIPQYLHEAGYTAKGKVACTQP 459
BLAST of GT618976 vs. TrEMBL
Match: D7LHV1_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_345267 PE=4 SV=1) HSP 1 Score: 276.944 bits (707), Expect = 1.352e-72 Identity = 143/250 (57.20%), Postives = 175/250 (70.00%), Query Frame = 3
Query: 3 RRSNAAEQDDIHSLRKFSXXXXXXXXXXXXXXXXXXXXXXXQYLFEGVKLSEVEQRELRHKKELYELIKKRSEEADNVNEYRMPDAYDQEGGVNQEKRFSVAMQRYRDTHAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKQASDDYQYVFEDQIDFIKASVMDGDEFDYDEMEDSIXXXXXXXXXXXLQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
RR +A E+ DI SLRKFS QYLF KL+E E RE R+KK++YE+IK+ ++E DNV EYRMPDAYDQ G V+QEKRF+V++QR D + EKMNPFAEQEAWE+HQI ATLK+G+KNK + SD+Y++VFEDQIDFIKASV+ G+ ++ + LQ +RK LPIY+YRD LL AV +QVL+IVGETGSGKTTQIPQYLHEAGYTKHG + CTQP
Sbjct: 211 RRDSAVEKGDIVSLRKFSRQEYVKKREQKKLEELKDDLEDEQYLFGDEKLTETEIREFRYKKKIYEVIKRSTQEEDNVGEYRMPDAYDQRGSVDQEKRFAVSVQR--DMGSAEKMNPFAEQEAWEDHQIENATLKFGAKNK-EVSDNYEFVFEDQIDFIKASVLAGENYEDEMHAKPSQDSAGKSAFHMLQEDRKALPIYSYRDRLLNAVKDHQVLIIVGETGSGKTTQIPQYLHEAGYTKHGKVGCTQP 457
BLAST of GT618976 vs. SwissProt
Match: CDC28_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS=Schizosaccharomyces pombe GN=cdc28 PE=2 SV=2) HSP 1 Score: 154.066 bits (388), Expect = 8.558e-37 Identity = 89/217 (41.01%), Postives = 132/217 (60.83%), Query Frame = 3
Query: 126 QYLFEGVKLSEVEQRELRHKKELYELIKKRSEEADNVNEYRMPDAY-DQEGGVNQEKRFSVAMQRYRDTHAEEKMNPF---AEQEAWEEHQIGKATLKYGSKNKKQASDDYQYVFED--QIDFIKASVMDGDE-FDYDEMEDSIXXXXXXXXXXXLQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTK-HGMIACTQP 752
+ LF G KL++ E REL KKEL + ++R EY+MP+ Y ++G ++++++ V QRY+D++ E+ AEQ+ WE QI KA L ++ + +VF++ QIDF+ + + + D D+M D L++ RK LP+Y Y+D+LLKA+N+YQVL+IV ETGSGKTTQ+PQ+LHEAGYTK + I CTQP
Sbjct: 263 EQLFAGEKLTQAEIRELEKKKELLRIAEERQRLEKQATEYQMPEDYFTEQGKLDRKRKEEVLYQRYKDSNEGEQNEVTMGAAEQQRWEAQQINKALLFDQNEWLPPGEKQFDFVFDESQQIDFLLDTKLSAENPVDTDKMTD-------VKVEKSLESSRKSLPVYQYKDDLLKAINEYQVLLIVAETGSGKTTQLPQFLHEAGYTKGNKKICCTQP 472
BLAST of GT618976 vs. SwissProt
Match: DHX16_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.577e-33 Identity = 84/217 (38.71%), Postives = 125/217 (57.60%), Query Frame = 3
Query: 132 LFEGVKLSEVEQRELRHKKELYELIKKRSEEADNVNEY-RMP------DAYDQEGGVNQEKRFSVAMQRYRDTHAEEKMNPFAEQEAWEEHQIGKATLK---YGSKNKKQASDDYQYVFEDQIDFIKASVMDGDEFDYDEMEDSIXXXXXXXXXXXLQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
LF+ KL+E E ++ KK+LYEL +R E+ ++Y ++P D+ + +N K ++ D+ + NP EQ+ WE++++ A + + N +++Y+YVFEDQI+FIK V+ + M +Q RK LP+Y YR++L+ AV +YQVL+IVGETGSGKTTQIPQYLHEAG++K G I CTQP
Sbjct: 311 LFKDQKLTEQEIKDFEKKKKLYELASQRINESQQSDDYYQLPSEIKDKDSLLKSSYINDNKN-----KKGNDSSSSSSYNP--EQKEWEQNRMKSAISENRGLSTANIGGGNEEYEYVFEDQIEFIKEEVLKQGQKGDGVMILKPGDDGSAQAKMTIQEVRKSLPVYPYREQLIDAVREYQVLIIVGETGSGKTTQIPQYLHEAGFSKTGKIGCTQP 520
BLAST of GT618976 vs. SwissProt
Match: DHX16_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2) HSP 1 Score: 135.961 bits (341), Expect = 2.412e-31 Identity = 84/217 (38.71%), Postives = 123/217 (56.68%), Query Frame = 3
Query: 126 QYLFEGVKLSEVEQRELRHKKELYELIKK-----RSEEADNVNEYRMPDAYDQEGGVNQEKRFSVAMQRYRDTHAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKQASDDYQYVFEDQ--IDFIKASVMDGDEFDYDEMEDSIXXXXXXXXXXXLQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGM-IACTQP 752
++LF V+LS E++EL++K+ + +L ++ E+ + N Y MP +E R A R D EE P EQ WEE ++G A+LK+G+++ YQ V E++ I+F++A+ + GDE + +QA R+ LP++ +R+ELL A+ +QVL+I GETGSGKTTQIPQYL E GYT GM IACTQP
Sbjct: 254 EFLFGDVELSRHERQELKYKRRVRDLAREYRAAGEQEKLEATNRYHMP----------KETRGQPA--RAVDLVEEESGAPGEEQRRWEEARLGAASLKFGARDAASQEPKYQLVLEEEETIEFVRATQLQGDE-----EPSAPPTSTQAQQKESIQAVRRSLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACTQP 453
BLAST of GT618976 vs. SwissProt
Match: DHX16_PANTR (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Pan troglodytes GN=DHX16 PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 9.165e-31 Identity = 83/217 (38.25%), Postives = 123/217 (56.68%), Query Frame = 3
Query: 126 QYLFEGVKLSEVEQRELRHKKELYELIKK-----RSEEADNVNEYRMPDAYDQEGGVNQEKRFSVAMQRYRDTHAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKQASDDYQYVFEDQ--IDFIKASVMDGDEFDYDEMEDSIXXXXXXXXXXXLQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGM-IACTQP 752
++LF V+LS E++EL++K+ + +L ++ E+ + N Y MP +E R A R D EE P EQ WEE ++G A+LK+G+++ YQ V E++ I+F++A+ + G+E + +QA R+ LP++ +R+ELL A+ +QVL+I GETGSGKTTQIPQYL E GYT GM IACTQP
Sbjct: 257 EFLFGDVELSRHERQELKYKRRVRDLAREYRAAGEQEKLEATNRYHMP----------KETRGQPA--RAVDLVEEESGAPGEEQRRWEEARLGAASLKFGARDAASQEPKYQLVLEEEETIEFVRATQLQGNE-----EPSAPPTSTQAQQKESIQAVRRSLPVFPFREELLAAIANHQVLIIEGETGSGKTTQIPQYLFEEGYTNKGMKIACTQP 456
BLAST of GT618976 vs. SwissProt
Match: DHX16_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 OS=Caenorhabditis elegans GN=mog-4 PE=2 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 9.484e-28 Identity = 72/212 (33.96%), Postives = 116/212 (54.72%), Query Frame = 3
Query: 126 QYLFEGVKLSEVEQRELRHKKELYELIKKRSEEAD--NVNEYRMPDAYDQEGGVNQEKRFSVAMQRYRDTHAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKQASDDYQYVFEDQIDFIKASVMDGDEFDYDEMEDSIXXXXXXXXXXXLQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHG-MIACTQP 752
Q LF KL++ E+ ++ ++K++ E K + D + Y +PDA ++ + Q D EE P + WEE Q+ + L G+K+ K+ +++ + ++++DFI+A M G + E E ++ RK LP+YA+RD ++AV ++QVL+I GETGSGKTTQ+PQYL+EAG+ + G I CTQP
Sbjct: 226 QTLFAREKLTKREKADMEYRKKVLEYTKAHGKAGDVMKMKRYHLPDASTKQ----------IPSQYVEDD--EEDFRPGGDGAKWEEEQLMASMLHLGAKDAKRKEQEFELLLDEKVDFIQALQMPGTNEEVVETEAE-------KKKMSIEETRKSLPVYAFRDAFIEAVKEHQVLIIEGETGSGKTTQLPQYLYEAGFCEGGKRIGCTQP 418
BLAST of GT618976 vs. SwissProt
Match: PRP22_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 OS=Saccharomyces cerevisiae GN=PRP22 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.767e-17 Identity = 64/181 (35.36%), Postives = 89/181 (49.17%), Query Frame = 3
Query: 213 RSEEADNVNEYRMPDAYDQEGGVNQEKRFSVAMQRYRDTHAEEKMNPFAEQEAWEEHQIGKA-TLKYGSKNKKQASDDYQYVFEDQIDFIKASVMDGDEFDYDEMEDSIXXXXXXXXXXXLQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
+ ++ +Y MP G + RD H EEK+ E E QI K + +KNKK + ++ Q + I E++ + M +SI + A+R+ LP+YA R EL++AV Q LVIVGETGSGKTTQI QYL E G++ +GMI CTQP
Sbjct: 373 KDQQVKGAKKYEMPKITKVPRGFMNRSAIN-GSNAIRD-HREEKLRKKREIE----QQIRKQQSFDDPTKNKKDSRNEIQMLKNQLIV---------TEWEKNRMNESISYGKRTSLP--ISAQRQTLPVYAMRSELIQAVRDNQFLVIVGETGSGKTTQITQYLDEEGFSNYGMIGCTQP 536
BLAST of GT618976 vs. SwissProt
Match: PRP2_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein PRP2 OS=Saccharomyces cerevisiae GN=PRP2 PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.738e-16 Identity = 64/195 (32.82%), Postives = 95/195 (48.72%), Query Frame = 3
Query: 198 ELIKKRSEEADNVNEYRMPDAYDQEGGVNQEKRFSVAM-QRYRDTHAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKK---QASDDYQYVFEDQ--IDFIKAS--VMDGDEFDYDEMEDSIXXXXXXXXXXXLQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHG--MIACTQP 752
EL K+ D+ NE + + +F+V + + ++ +K+N Q WEE Q+ A + SD Y YVF+ ID+ ++ ++ Y E + +Q RK LP++ Y+DELL+ + K QVL+I+GETGSGKTTQ+PQYL E G+T G IA TQP
Sbjct: 97 ELTTKKGLLGDSENETKY---------ASSNSKFNVEVTHKIKNAKEIDKIN---RQRMWEEQQLRNAMAGQSDHPDDITLEGSDKYDYVFDTDAMIDYTNEEDDLLPEEKLQY-EARLAQALETEEKRILTIQEARKLLPVHQYKDELLQEIKKNQVLIIMGETGSGKTTQLPQYLVEDGFTDQGKLQIAITQP 278
BLAST of GT618976 vs. SwissProt
Match: DHX8_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 1.855e-15 Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 3
Query: 570 LQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
+Q +R+ LPIY + EL++AV+ QVLV++GETGSGKTTQ+ QYL EAGYT G I CTQP
Sbjct: 508 IQEQRESLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQP 568
BLAST of GT618976 vs. SwissProt
Match: PRP16_BOVIN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus GN=DHX38 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 9.208e-15 Identity = 49/143 (34.27%), Postives = 72/143 (50.35%), Query Frame = 3
Query: 330 HAEEKMNPFAEQEAWEEHQIGKATLKYGSKN--KKQASDDYQYVFEDQIDFIKASVMDGDEFDYDEMEDSIXXXXXXXXXXXLQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
H E+K A+ + WE A K G KK+ D + ++D+ ++ D M+ + +R+ LPI+A + ELL + ++++VGETGSGKTTQ+ QYLHE GYT +GMI CTQP
Sbjct: 454 HREQKERKKAQHKHWE-----LAGTKLGDIMGVKKEEEPDKSLTEDGKVDYRT------EQKFADHMKKKSEASSEFAKKKSILEQRQYLPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQP 585
BLAST of GT618976 vs. SwissProt
Match: DHX8_MOUSE (ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 9.208e-15 Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = 3
Query: 579 ERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
+R+ LPIY +++L++AV+ Q+L+++GETGSGKTTQI QYL EAGYT G I CTQP
Sbjct: 585 QRESLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQP 642
BLAST of GT618976 vs. TAIR peptide
Match: AT1G32490.1 (| Symbols: EMB2733, ESP3 | RNA helicase family protein | chr1:11742356-11749286 REVERSE LENGTH=1044) HSP 1 Score: 306.22 bits (783), Expect = 1.338e-83 Identity = 156/251 (62.15%), Postives = 186/251 (74.10%), Query Frame = 3
Query: 3 RRSNAAEQDDIHSLRKFSXXXXXXXXXXXXXXXXXXXXXXXQYLFEGVKLSEVEQRELRHKKELYELIKKRSEEADNVNEYRMPDAYDQEGGVNQEKRFSVAMQRYRDTHAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKQASDDYQYVFEDQIDFIKASVMDGDEF-DYDEMEDSIXXXXXXXXXXXLQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
RR+NA E+DD++SLRK S QYLF G KL+E E RE R+KKELY+L+KKR+++ DNV EYR+PDAYDQEGGV+QEKRFSVA+QRYRD + EKMNPFAEQEAWE+HQIGKATLK+G+KN KQASDDYQ+VFEDQI+FIK SVM G+ + D + + LQ R+ LPIY YRD+LLKAV ++QVLVIVG+TGSGKTTQIPQYLHEAGYTK G + CTQP
Sbjct: 208 RRANALEKDDLYSLRKVSRQEYLKKREQKKLDELRDEIEDEQYLFGGEKLTETELREFRYKKELYDLVKKRTQDEDNVEEYRIPDAYDQEGGVDQEKRFSVAVQRYRDLDSTEKMNPFAEQEAWEDHQIGKATLKFGAKN-KQASDDYQFVFEDQINFIKESVMAGENYEDAMDAKQKSQDLAEKTALEELQEVRRSLPIYTYRDQLLKAVEEHQVLVIVGDTGSGKTTQIPQYLHEAGYTKRGKVGCTQP 457
BLAST of GT618976 vs. TAIR peptide
Match: AT2G35340.1 (| Symbols: MEE29 | helicase domain-containing protein | chr2:14872728-14879615 FORWARD LENGTH=1044) HSP 1 Score: 282.337 bits (721), Expect = 2.070e-76 Identity = 144/250 (57.60%), Postives = 175/250 (70.00%), Query Frame = 3
Query: 3 RRSNAAEQDDIHSLRKFSXXXXXXXXXXXXXXXXXXXXXXXQYLFEGVKLSEVEQRELRHKKELYELIKKRSEEADNVNEYRMPDAYDQEGGVNQEKRFSVAMQRYRDTHAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKQASDDYQYVFEDQIDFIKASVMDGDEFDYDEMEDSIXXXXXXXXXXXLQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
RR +A ++ DI SLRKFS YLF KL+E E RE R+K+E+YELIKK ++E DNV EYRMPDAYDQ+G V+QEKRF+V++QRYRD + EKMNPFAEQEAWE+HQI A LK+G+KN K+ SD+Y++VFEDQIDFIKASV+ GD ++ + LQ +RK LPIY YRD+LL AV +QVL+IVGETGSGKTTQIPQYLHEAGYTK G + CTQP
Sbjct: 209 RRDSAVDKGDIESLRKFSWQEYMKKRKQKKVLELKDDIEDEPYLFGDEKLTEREIREFRYKREIYELIKKSTQEEDNVGEYRMPDAYDQQGSVDQEKRFAVSVQRYRDMGSAEKMNPFAEQEAWEDHQIENAALKFGAKN-KEVSDNYEFVFEDQIDFIKASVLAGDNYEDEMHAKPSQDSAGKSAFHMLQEDRKALPIYTYRDQLLNAVKDHQVLIIVGETGSGKTTQIPQYLHEAGYTKLGKVGCTQP 457
BLAST of GT618976 vs. TAIR peptide
Match: AT1G32490.2 (| Symbols: ESP3 | RNA helicase family protein | chr1:11742356-11749286 REVERSE LENGTH=1034) HSP 1 Score: 278.485 bits (711), Expect = 2.989e-75 Identity = 147/251 (58.57%), Postives = 177/251 (70.52%), Query Frame = 3
Query: 3 RRSNAAEQDDIHSLRKFSXXXXXXXXXXXXXXXXXXXXXXXQYLFEGVKLSEVEQRELRHKKELYELIKKRSEEADNVNEYRMPDAYDQEGGVNQEKRFSVAMQRYRDTHAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKQASDDYQYVFEDQIDFIKASVMDGDEF-DYDEMEDSIXXXXXXXXXXXLQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
RR+NA E+DD++SLRK S QYLF G KL+E E RE R+KKELY+L+KKR+++ DNV +EGGV+QEKRFSVA+QRYRD + EKMNPFAEQEAWE+HQIGKATLK+G+KNK QASDDYQ+VFEDQI+FIK SVM G+ + D + + LQ R+ LPIY YRD+LLKAV ++QVLVIVG+TGSGKTTQIPQYLHEAGYTK G + CTQP
Sbjct: 208 RRANALEKDDLYSLRKVSRQEYLKKREQKKLDELRDEIEDEQYLFGGEKLTETELREFRYKKELYDLVKKRTQDEDNV----------EEGGVDQEKRFSVAVQRYRDLDSTEKMNPFAEQEAWEDHQIGKATLKFGAKNK-QASDDYQFVFEDQINFIKESVMAGENYEDAMDAKQKSQDLAEKTALEELQEVRRSLPIYTYRDQLLKAVEEHQVLVIVGDTGSGKTTQIPQYLHEAGYTKRGKVGCTQP 447
BLAST of GT618976 vs. TAIR peptide
Match: AT4G16680.1 (| Symbols: | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:9388613-9390774 REVERSE LENGTH=656) HSP 1 Score: 169.859 bits (429), Expect = 1.497e-42 Identity = 93/196 (47.45%), Postives = 121/196 (61.73%), Query Frame = 3
Query: 168 RELRHKKELYELIKKRSEEADNVNEYRMPDAYDQEGGVNQEKRFSVAMQRYRDTHAEEKMNPFAEQEAWEEHQIGKATLKYGSKNKKQASDDYQYVFEDQIDFIKASVMDGDEFDYDEMEDSIXXXXXXXXXXXLQAE-RKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
RE+ +K L + K+ EE + YR PDAYDQEG ++Q+KRF VA +RY + ++ EQEAWE+HQ KA +++G+K+KKQ D Y++VF+D F++ S E E E R+ LPI+ YR+ELLK + + QVLVIVGETGSGKTTQIPQYL EAGYTK G I CTQP
Sbjct: 84 REVSRRKYLTDRENKKVEELRDERRYRFPDAYDQEGCIDQKKRFDVAKERYCERRRSGRV--VTEQEAWEDHQAQKARVRFGAKDKKQVVDGYEFVFDDLTGFVEES---------SEAETGKHRGCYSKTAAEKAREGREFLPIHGYREELLKLIEENQVLVIVGETGSGKTTQIPQYLQEAGYTKRGKIGCTQP 268
BLAST of GT618976 vs. TAIR peptide
Match: AT5G13010.1 (| Symbols: EMB3011 | RNA helicase family protein | chr5:4122747-4128660 FORWARD LENGTH=1255) HSP 1 Score: 83.5741 bits (205), Expect = 1.411e-16 Identity = 36/58 (62.07%), Postives = 49/58 (84.48%), Query Frame = 3
Query: 579 ERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
+R+ LPI++ RDELL+ + + QV+V+VGETGSGKTTQ+ QYLHE GYT +G++ CTQP
Sbjct: 554 QRQYLPIFSVRDELLQVIRENQVIVVVGETGSGKTTQLTQYLHEDGYTINGIVGCTQP 611
BLAST of GT618976 vs. TAIR peptide
Match: AT3G26560.1 (| Symbols: | ATP-dependent RNA helicase, putative | chr3:9750122-9753719 REVERSE LENGTH=1168) HSP 1 Score: 83.1889 bits (204), Expect = 1.843e-16 Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 3
Query: 570 LQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
+Q +R+ LPIY + EL++AV+ QVLV++GETGSGKTTQ+ QYL EAGYT G I CTQP
Sbjct: 508 IQEQRESLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQP 568
BLAST of GT618976 vs. TAIR peptide
Match: AT4G18465.1 (| Symbols: | RNA helicase family protein | chr4:10197056-10201611 FORWARD LENGTH=695) HSP 1 Score: 77.7962 bits (190), Expect = 7.742e-15 Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = 3
Query: 570 LQAERKKLPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHG-MIACTQP 752
++ +R++LP+Y YR E+L V + +IVGETGSGKTTQIPQYL EAG+ + G +IACTQP
Sbjct: 41 IEKQRQRLPVYKYRTEILYLVENHATTIIVGETGSGKTTQIPQYLKEAGWAEGGRVIACTQP 102
BLAST of GT618976 vs. TAIR peptide
Match: AT5G10370.1 (| Symbols: | helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related | chr5:3261245-3267188 FORWARD LENGTH=1775) HSP 1 Score: 67.0106 bits (162), Expect = 1.367e-11 Identity = 28/54 (51.85%), Postives = 42/54 (77.78%), Query Frame = 3
Query: 591 LPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
LPIYAYR ++LK +++ Q++V++GETGSGK+TQ+ Q+L ++G I CTQP
Sbjct: 306 LPIYAYRRQILKKIHREQIMVLIGETGSGKSTQLVQFLADSGVAASESIVCTQP 359
BLAST of GT618976 vs. TAIR peptide
Match: AT1G27900.1 (| Symbols: | RNA helicase family protein | chr1:9715615-9720346 REVERSE LENGTH=700) HSP 1 Score: 67.0106 bits (162), Expect = 1.367e-11 Identity = 30/54 (55.56%), Postives = 41/54 (75.93%), Query Frame = 3
Query: 591 LPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
LPI + +++++ V K V+VI+GETGSGK+TQ+ Q LH GYTK G+IA TQP
Sbjct: 4 LPILQFEEKIVETVEKNSVVVIIGETGSGKSTQLSQILHRHGYTKSGVIAITQP 57
BLAST of GT618976 vs. TAIR peptide
Match: AT4G01020.1 (| Symbols: | helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related | chr4:439086-445043 FORWARD LENGTH=1787) HSP 1 Score: 65.4698 bits (158), Expect = 3.976e-11 Identity = 44/140 (31.43%), Postives = 71/140 (50.71%), Query Frame = 3
Query: 393 KATLKYGSKNKKQASDDYQYVFEDQIDFIKASV---------MDGDEFDYDEMED------SIXXXXXXXXXXXLQAERKK-----LPIYAYRDELLKAVNKYQVLVIVGETGSGKTTQIPQYLHEAGYTKHGMIACTQP 752
K LK+ KK+A + + + +++D ++ DG EFD D+ +D S+ L + LPIYAYR ++LK ++ Q++V++GETGSGK+TQ+ Q+L ++G I CTQP
Sbjct: 217 KRGLKFEVFEKKKALEAERDLVVNRLDEFNNAMKSILRYLIGQDGYEFDVDDEDDEDVAVFSLEGAYDWRRIHYLILRECRRLEDGLPIYAYRRQILKKIHCEQIMVLIGETGSGKSTQLVQFLADSGVAASESIVCTQP 356 The following BLAST results are available for this feature:
BLAST of GT618976 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl) Total hits: 10
BLAST of GT618976 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot) Total hits: 10
BLAST of GT618976 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide) Total hits: 10
InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GT618976 ID=GT618976; Name=GT618976; organism=Lens culinaris; type=EST; length=794bpback to top |