GT619001

EST Overview
NameGT619001
Unique NameGT619001
TypeEST
OrganismLens culinaris (lentil)
Sequence length787
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT619001 vs. TrEMBL
Match: D7TFE4_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_87.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00036912001 PE=4 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 5.310e-21
Identity = 68/146 (46.58%), Postives = 79/146 (54.11%), Query Frame = 1
Query:  235 RGFPSYCLGTTSGSRDSDNDEQICDQ-NKVNGSDVTYTSSNEIDLDEAKSESFRKVK---PDEIPCMPSNIDLDEWSQ-----TESRTASISAHGSSTQSTNSTSRFLSRFSLIPGNIXXXXXXXXXXXXXXPCPDSSASLSIFNN 645
            R F S CL   SGS  SD+D    D  NK NG +   T  NE + D+ KS  FRKVK   PDE+P + SN+ L EW Q     T SR  S S   SSTQS N +SRFLSRFSLIPGNI                P SS+S++  NN
Sbjct:   24 RVFHSSCLRPPSGSHHSDSDNDSDDHPNKENGCNGPCTDQNETESDQLKSGCFRKVKVEQPDEMPSISSNVGLQEWDQANFTRTSSRAGSSSTRASSTQSLNPSSRFLSRFSLIPGNISFRLSRASSLGSSRAYPVSSSSITSNNN 169          
BLAST of GT619001 vs. TrEMBL
Match: B9H061_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_817260 PE=4 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 9.057e-21
Identity = 77/194 (39.69%), Postives = 101/194 (52.06%), Query Frame = 1
Query:  211 RKNRSKSL-RGFPSYCLGTTSGSRDSDNDEQICDQ-NKVN-GSDVTYTSSNEIDLDEAKSESFRKVK---PDEIPCMPSNIDLDEWSQ-----TESRTASISAHGSS-TQSTNSTSRFLSRFSLIPGNIXXXXXXXXXXXXXXPCPDSSASLSIFNNEDELSLH----------NRNEAQQYSGGDLLNRSFVN 726
            RK +SK   + F S CLGT  GSRDS + +++CD  NK N   + + T+ NEID DE K E + KVK    D+ PC+ S+++LDEW+Q     T SRT S SA  ++ TQS+   SR LSR S IPGN+                   S    +F+ EDE+  H          N NE QQ S  DLL  S  +
Sbjct:   24 RKGKSKGRSKVFQSSCLGTPCGSRDSTSGDRVCDDGNKENCEGNASSTNRNEIDSDEVKIECYGKVKVEQSDKTPCISSDVELDEWNQASITNTSSRTGSSSARAAAPTQSSTFPSRLLSRLSFIPGNVSFRLSRAVSLGSSRAYHTHSTGPRMFDGEDEIRHHPQSANSVVDGNGNEIQQIS--DLLATSLAS 215          
BLAST of GT619001 vs. TrEMBL
Match: B9S1Q3_RICCO (Ring finger protein, putative OS=Ricinus communis GN=RCOM_0867230 PE=4 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.287e-14
Identity = 59/168 (35.12%), Postives = 82/168 (48.81%), Query Frame = 1
Query:  298 QICDQ-NKVNGSDVTYTSSNEIDLDEAKSESFRKVKPDEIP--CMPSNIDLDEWSQTE-----SRTASISAHGSSTQSTNSTSRFLSRFSLIPGNIXXXXXXXXXXXXXXPCPDSSASLSIFNNEDELSLHNR--------NEAQQYSGGDLLNRSFVNPVPIQNHGD 753
            Q+CD  +K N  + + T   + +L++AK ES+RKVK ++    C+ SN+DLDEW Q       SR  S S   +S  +  S S FLSRFS +PGN+                 +SS +L + N +  + LH R        N AQQ S  DLL  S +N      H D
Sbjct:    3 QVCDHMSKENEGNASSTGQTKRELEQAKIESYRKVKGEQSDETCVSSNVDLDEWRQASITNAASRVGSSSTRDASGPALTSQSSFLSRFSFVPGNVSFRLSRATSLGSSRGYCNSSTNLQMLNEKKGICLHPRSGNGVIDGNGAQQSS--DLLPASLINRTHRVYHED 168          
BLAST of GT619001 vs. TrEMBL
Match: B9MUG9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_676688 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.712e-11
Identity = 50/121 (41.32%), Postives = 63/121 (52.07%), Query Frame = 1
Query:  412 IPCMPSNIDLDEWSQ-----TESRTASISAHGSS-TQSTNSTSRFLSRFSLIPGNIXXXXXXXXXXXXXXPCPDSSASLSIFNNEDELSLH----------NRNEAQQYSGGDLLNRSFVN 726
            +PC+ S+++LDEW+Q     T SRT S SA  ++ TQS  S SRFLSRFS IPGN+                P  S SL + +NED++  H          N NE QQ S  DL   S VN
Sbjct:    1 MPCISSDVELDEWNQASITNTSSRTGSSSARAAAPTQSLTSPSRFLSRFSFIPGNVSFRLSRAVSLGSSRGYPIHSTSLRMLDNEDQIRRHPQSASGAVDGNGNETQQSS--DLFATSLVN 119          
BLAST of GT619001 vs. TrEMBL
Match: B9RU00_RICCO (Ring finger protein, putative OS=Ricinus communis GN=RCOM_1457960 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.193e-10
Identity = 63/189 (33.33%), Postives = 81/189 (42.86%), Query Frame = 1
Query:  211 RKNRSKSLRGFPSYCLGTTSGSRDSDNDEQICDQNKVN-----GSDVTYTSSNEIDLDEAKSESFRKVKPDEIPCMPSNIDLDEWSQTE-----SRTASISAHGSSTQSTNSTSRFLSRFSLIPGNIXXXXXXXXXXXXXXPCPDSSASLSIFNNEDELSLHNRNEAQQYSGGDLLNRSFVNPVPIQNH 747
            RK R K  R F S CLG   G+  +DN +     +K N      S  T T S ++ +D  K     KVK  E  C+ S+  LDE SQ        R  S SA  +S  S  S S FLSRFS IPGN+                   S SL + N+E+E+  H R+ A    G +    S + P     H
Sbjct:   20 RKGRCKGSRVFQSSCLG---GAPSNDNTKMCHRNSKENIGNASPSGQTGTLSGQVKIDCRKV----KVKQSEESCVSSSAGLDECSQASITNRACRIGSSSARAASIPSLTSQSSFLSRFSFIPGNMSFRLNRATSLGSSRAYRIPSTSLQMLNDEEEIQ-HPRS-ANNTDGSETQQISDLQPTTHSQH 199          
The following BLAST results are available for this feature:
BLAST of GT619001 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 5
Match NameE-valueIdentityDescription
D7TFE4_VITVI5.310e-2146.58Whole genome shotgun sequence of line PN40024, sca... [more]
B9H061_POPTR9.057e-2139.69Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9S1Q3_RICCO6.287e-1435.12Ring finger protein, putative OS=Ricinus communis ... [more]
B9MUG9_POPTR1.712e-1141.32Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9RU00_RICCO7.193e-1033.33Ring finger protein, putative OS=Ricinus communis ... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 6..16
score: NAcoord: 135..148
score: NAcoord: 200..206
score
NoneNo IPR availableSEGsegsegcoord: 3..13
score: NAcoord: 22..40
score
NoneNo IPR availableSEGsegsegcoord: 45..56
score
NoneNo IPR availableSEGsegsegcoord: 58..88
score
NoneNo IPR availableSEGsegsegcoord: 2..14
score: NAcoord: 31..42
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT619001 ID=GT619001; Name=GT619001; organism=Lens culinaris; type=EST; length=787bp
CTTCTCTTAAGTAACTTACACACACAAATGCTACTTTACTTTCTCACCGC
TACAGATCTGAAACTCCTTGGATCTTCAAAACAACTCTTTTTCATTTCTG
GGTTTTCTTATTCGGCCTATTGGGTCATTGAAAAACCATTCTTTTAACGA
TTGTTTTGAAGGAAAATAATGGGGTCTAGTAGTAGTAAAGGTGCTTCTTC
TTGTAGTTTACGAAAGAATCGATCCAAGAGCCTTAGAGGTTTTCCTTCTT
ATTGTCTTGGAACAACTTCTGGATCTCGTGATAGTGATAATGATGAACAG
ATTTGTGATCAGAATAAAGTAAATGGAAGTGATGTTACATACACAAGCAG
CAATGAAATTGACTTGGATGAAGCGAAATCGGAGTCTTTTAGGAAAGTTA
AACCTGATGAAATACCTTGTATGCCTTCTAACATTGATCTTGATGAGTGG
AGTCAGACTGAATCCAGAACCGCGAGCATCTCTGCACACGGTTCTTCAAC
TCAGTCCACAAATTCTACAAGTCGGTTCCTTTCTCGGTTTAGCCTCATTC
CGGGTAATATAAGCTTCAGACTTAGCAGAACCACCAGTTTAGGATCATCT
CGACCTTGTCCTGATTCTTCGGCAAGTCTTTCTATATTTAACAATGAAGA
TGAGCTTAGTCTGCATAATAGAAATGAAGCTCAACAATATAGTGGTGGTG
ACTTGCTTAACAGGTCTTTTGTAAATCCAGTCCCTATACAGAATCACGGA
GATGGTTCTAATAATTCAAGTTCCAATGCCCCGATAT
back to top