AM161650

EST Overview
NameAM161650
Unique NameAM161650
TypeEST
OrganismPisum sativum (pea)
Sequence length240
Libraries
Library NameType
LIBEST_019360 Pisum sativum leaf vegetativecdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Homology
BLAST of AM161650 vs. TrEMBL
Match: D7SXR5_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_91.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00037850001 PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.430e-7
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = -2
Query:    3 SISSMDNNGSRRTSMSVSMYXXXXXXXRPRKSPPDLPSFLLDSRIVYLGLPI 158
            S+S +++ G  + SMSVSMY       RPR +PPDLPS LLD+RI YLG+PI
Sbjct:  135 SLSGVNDRGPSKYSMSVSMYRGGRGSGRPRTAPPDLPSLLLDARICYLGMPI 186          
BLAST of AM161650 vs. TrEMBL
Match: C6TDX0_SOYBN (ATP-dependent Clp protease proteolytic subunit (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 7.099e-7
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = -2
Query:    3 SISSMDNNGSRRTSMSVSMYXXXXXXXRPRKSPPDLPSFLLDSRIVYLGLPI 158
            S+S M  + + + SMSVSMY       RP+ +PPDLPS LLD+RI YLG+PI
Sbjct:  117 SLSGMGKSDASKYSMSVSMYRGGRGTGRPKTAPPDLPSLLLDARICYLGMPI 168          
BLAST of AM161650 vs. SwissProt
Match: CLPR1_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana GN=CLPR1 PE=1 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 5.095e-7
Identity = 29/55 (52.73%), Postives = 35/55 (63.64%), Query Frame = -2
Query:    3 SISSMDNNGSRRTSMSVSMYXXXXXXXR---PRKSPPDLPSFLLDSRIVYLGLPI 158
            S+S M+   +RR SMSV MY           PR +PPDLPS LLD+RI YLG+PI
Sbjct:  134 SMSGMNAADARRYSMSVQMYRGGGGGGGSERPRTAPPDLPSLLLDARICYLGMPI 188          
BLAST of AM161650 vs. TAIR peptide
Match: AT1G49970.1 (| Symbols: CLPR1, NCLPP5, SVR2 | CLP protease proteolytic subunit 1 | chr1:18501936-18504462 REVERSE LENGTH=387)

HSP 1 Score: 53.1434 bits (126), Expect = 3.965e-8
Identity = 29/55 (52.73%), Postives = 35/55 (63.64%), Query Frame = -2
Query:    3 SISSMDNNGSRRTSMSVSMYXXXXXXXR---PRKSPPDLPSFLLDSRIVYLGLPI 158
            S+S M+   +RR SMSV MY           PR +PPDLPS LLD+RI YLG+PI
Sbjct:  134 SMSGMNAADARRYSMSVQMYRGGGGGGGSERPRTAPPDLPSLLLDARICYLGMPI 188          
The following BLAST results are available for this feature:
BLAST of AM161650 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 2
Match NameE-valueIdentityDescription
D7SXR5_VITVI1.430e-755.77Whole genome shotgun sequence of line PN40024, sca... [more]
C6TDX0_SOYBN7.099e-753.85ATP-dependent Clp protease proteolytic subunit (Fr... [more]
back to top
BLAST of AM161650 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
CLPR1_ARATH5.095e-752.73ATP-dependent Clp protease proteolytic subunit-rel... [more]
back to top
BLAST of AM161650 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G49970.13.965e-852.73| Symbols: CLPR1, NCLPP5, SVR2 | CLP protease prot... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 17..43
score
NoneNo IPR availableSEGsegsegcoord: 9..35
score
NoneNo IPR availableSEGsegsegcoord: 48..55
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>AM161650 ID=AM161650; Name=AM161650; organism=Pisum sativum; type=EST; length=240bp
ACAATCGGCAAACCAAGATAAACTATCCGAGAATCCAACAGAAAAGAAGG
CAAATCCGGAGGAGACTTCCTAGGCCTTCTCCCCCTACCACCTCCTCTAT
ACATACTAACACTCATGCTGGTCCTTCTAGAGCCATTATTGTCCATGCTA
GATATACTACTACATTCCACTATTGATCCAAATAACTTTAGAGAGCAAGA
TAGAAATGCTTTACCTCTTGTGACACATTTGAGGACAATC
back to top