GH720296

EST Overview


Name	GH720296
Unique Name	GH720296
Type	EST
Organism	Pisum sativum (pea)
Sequence length	275

Libraries


Library Name	Type
LIBEST_024270 552I	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Homology

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BLAST of GH720296 vs. TrEMBL
Match: Q9M549_CUCSA (Poly(A)-binding protein OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.575e-32
Identity = 68/78 (87.18%), Postives = 73/78 (93.59%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            DDAAR+VEALNGKK+D KEWYVGKAQKKSERE ELK +FEQS+KEAADKYQGANLYVKNLDDSI DDKLKELF+ FGT
Sbjct:  259 DDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADKYQGANLYVKNLDDSIDDDKLKELFTGFGT 336

[Close]

BLAST of GH720296 vs. TrEMBL
Match: B9GHB4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_815675 PE=4 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.495e-31
Identity = 67/78 (85.90%), Postives = 74/78 (94.87%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            +DAA+AVEALNGKKIDDKEW+VGKAQKK ERE ELKQ+FEQSMKEAADK+QGANLY+KNLDDSI D+KLKELFS FGT
Sbjct:  255 EDAAKAVEALNGKKIDDKEWFVGKAQKKYEREVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKLKELFSPFGT 332

[Close]

BLAST of GH720296 vs. TrEMBL
Match: B9RYE9_RICCO (Polyadenylate-binding protein, putative OS=Ricinus communis GN=RCOM_0812530 PE=4 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.481e-31
Identity = 65/78 (83.33%), Postives = 73/78 (93.59%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            DDAA AVEALNGKK DDKEW+VGKAQKK+ERE+ELK +FEQSMKEAADK+QGANLY+KNLDDSI DD+LK+LFS FGT
Sbjct:  254 DDAATAVEALNGKKFDDKEWFVGKAQKKNERENELKVRFEQSMKEAADKFQGANLYIKNLDDSIGDDRLKQLFSPFGT 331

[Close]

BLAST of GH720296 vs. TrEMBL
Match: D7SVT7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_31.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00022079001 PE=4 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.238e-30
Identity = 65/78 (83.33%), Postives = 71/78 (91.03%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            DDAAR+VEALNGKK DDKEWYVGKAQKK+ERE ELK +FEQS+KEA DK+QG NLYVKNLDDSI DDKL+ELFS FGT
Sbjct:  262 DDAARSVEALNGKKFDDKEWYVGKAQKKTEREVELKGRFEQSLKEAVDKFQGLNLYVKNLDDSIADDKLRELFSEFGT 339

[Close]

BLAST of GH720296 vs. TrEMBL
Match: B9HS30_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_557410 PE=4 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.238e-30
Identity = 65/78 (83.33%), Postives = 72/78 (92.31%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            DDAA+A EALNGKK DDKEW+VGKAQKK ERE ELKQ+FEQSMKEAADK+QGANLY+KNLDDSI D+K+KELFS FGT
Sbjct:  255 DDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGT 332

[Close]

BLAST of GH720296 vs. TrEMBL
Match: A9PEX9_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.238e-30
Identity = 65/78 (83.33%), Postives = 72/78 (92.31%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            DDAA+A EALNGKK DDKEW+VGKAQKK ERE ELKQ+FEQSMKEAADK+QGANLY+KNLDDSI D+K+KELFS FGT
Sbjct:   20 DDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQSMKEAADKFQGANLYIKNLDDSIGDEKIKELFSPFGT 97

[Close]

BLAST of GH720296 vs. TrEMBL
Match: D7TPF8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_63.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00031709001 PE=4 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.603e-30
Identity = 64/78 (82.05%), Postives = 71/78 (91.03%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            DDAA +VEALNG+K DDKEWYVGKAQKKSERE ELK +FEQ+MKEA DK+QGANLY+KNLDDSI DDKLKELF+ FGT
Sbjct:  399 DDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQNMKEAVDKFQGANLYIKNLDDSIGDDKLKELFAQFGT 476

[Close]

BLAST of GH720296 vs. TrEMBL
Match: B9R792_RICCO (Polyadenylate-binding protein, putative OS=Ricinus communis GN=RCOM_1589620 PE=4 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.603e-30
Identity = 65/78 (83.33%), Postives = 70/78 (89.74%), Query Frame = 1

Query:   25 TDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFG 258
            TD AA+AVE+LNGKKIDDKEWYVGKAQKKSERE ELK +FEQSMKEA DKYQG NLY+KNLDDSI D+ LKELFS FG
Sbjct:  265 TDAAAKAVESLNGKKIDDKEWYVGKAQKKSERELELKSQFEQSMKEAVDKYQGVNLYIKNLDDSISDENLKELFSDFG 342

[Close]

BLAST of GH720296 vs. TrEMBL
Match: A5BR81_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004873 PE=4 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.603e-30
Identity = 64/78 (82.05%), Postives = 71/78 (91.03%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            DDAA +VEALNG+K DDKEWYVGKAQKKSERE ELK +FEQ+MKEA DK+QGANLY+KNLDDSI DDKLKELF+ FGT
Sbjct:  260 DDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQNMKEAVDKFQGANLYIKNLDDSIGDDKLKELFAQFGT 337

[Close]

BLAST of GH720296 vs. TrEMBL
Match: Q9M6E4_TOBAC (Poly(A)-binding protein (Fragment) OS=Nicotiana tabacum GN=PABP PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.705e-30
Identity = 64/78 (82.05%), Postives = 70/78 (89.74%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            +DAA+AVE+LNGKK DDKEWYVGKAQKKSERE ELK KFEQ+ KEA DKYQG NLYVKNLDD+I D+KLKELFS FGT
Sbjct:   90 EDAAKAVESLNGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKYQGLNLYVKNLDDTIDDEKLKELFSEFGT 167

[Close]

BLAST of GH720296 vs. SwissProt
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.053e-29
Identity = 59/78 (75.64%), Postives = 70/78 (89.74%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            DDAARAVE+LNG K DDKEWYVG+AQKKSERE EL+ ++EQ++KEAADK+Q +NLYVKNLD SI D+KLKE+FS FGT
Sbjct:  266 DDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGT 343

HSP 2 Score: 52.7582 bits (125), Expect = 6.634e-7
Identity = 28/77 (36.36%), Postives = 42/77 (54.55%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFG 258
            + A +A+E LNG  ++DK+ YVG   ++ ER+              A+K +  N+YVKNL +S  DD LK  F  +G
Sbjct:  175 ESAQKAIEKLNGMLLNDKQVYVGPFLRRQERD------------STANKTKFTNVYVKNLAESTTDDDLKNAFGEYG 239

[Close]

BLAST of GH720296 vs. SwissProt
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.067e-20
Identity = 47/78 (60.26%), Postives = 60/78 (76.92%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            D+AA AVEALN K    ++ YVG+AQKK ERE EL++++E +  E A KYQG NLY+KNL D I D+KL+ELFSS+GT
Sbjct:  288 DNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGT 365

[Close]

BLAST of GH720296 vs. SwissProt
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.833e-20
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 1

Query:   25 TDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFG 258
            T+ AA AVE +NG  + D   YVG+AQKKSERE EL++KFEQ      +K QGANLY+KNLDDS+ D+KLKE+FS +G
Sbjct:  279 TEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYG 356

[Close]

BLAST of GH720296 vs. SwissProt
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.833e-20
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            +DA +AV+ +NGK+++ K+ YVG+AQKK ER+ ELK+KFEQ  ++   +YQG NLYVKNLDD I D++L++ FS FGT
Sbjct:  242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319

HSP 2 Score: 53.5286 bits (127), Expect = 3.889e-7
Identity = 26/75 (34.67%), Postives = 45/75 (60.00%), Query Frame = 1

Query:   34 AARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFG 258
            A RA+E +NG  ++D++ +VG+ + + ERE EL  + ++            N+Y+KN  + + D++LKELF  FG
Sbjct:  151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF----------TNVYIKNFGEDMDDERLKELFGKFG 215

[Close]

BLAST of GH720296 vs. SwissProt
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.833e-20
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            +DA +AV+ +NGK+++ K+ YVG+AQKK ER+ ELK+KFEQ  ++   +YQG NLYVKNLDD I D++L++ FS FGT
Sbjct:  242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319

HSP 2 Score: 52.373 bits (124), Expect = 8.664e-7
Identity = 26/75 (34.67%), Postives = 44/75 (58.67%), Query Frame = 1

Query:   34 AARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFG 258
            A RA+E +NG  ++D++ +VG+ + + ERE EL           A   +  N+Y+KN  + + D++LK+LF  FG
Sbjct:  151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL----------GARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 215

[Close]

BLAST of GH720296 vs. SwissProt
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.833e-20
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            +DA +AV+ +NGK+++ K+ YVG+AQKK ER+ ELK+KFEQ  ++   +YQG NLYVKNLDD I D++L++ FS FGT
Sbjct:  242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319

HSP 2 Score: 53.1434 bits (126), Expect = 5.079e-7
Identity = 26/75 (34.67%), Postives = 45/75 (60.00%), Query Frame = 1

Query:   34 AARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFG 258
            A RA+E +NG  ++D++ +VG+ + + ERE EL  + ++            N+Y+KN  + + D++LKELF  FG
Sbjct:  151 AERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEF----------TNVYIKNFGEDMDDERLKELFGKFG 215

[Close]

BLAST of GH720296 vs. SwissProt
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.833e-20
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            +DA +AV+ +NGK+++ K+ YVG+AQKK ER+ ELK+KFEQ  ++   +YQG NLYVKNLDD I D++L++ FS FGT
Sbjct:  242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319

HSP 2 Score: 52.373 bits (124), Expect = 8.664e-7
Identity = 26/75 (34.67%), Postives = 44/75 (58.67%), Query Frame = 1

Query:   34 AARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFG 258
            A RA+E +NG  ++D++ +VG+ + + ERE EL           A   +  N+Y+KN  + + D++LK+LF  FG
Sbjct:  151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL----------GARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 215

[Close]

BLAST of GH720296 vs. SwissProt
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.833e-20
Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            +DA +AV+ +NGK+++ K+ YVG+AQKK ER+ ELK+KFEQ  ++   +YQG NLYVKNLDD I D++L++ FS FGT
Sbjct:  242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGT 319

HSP 2 Score: 52.373 bits (124), Expect = 8.664e-7
Identity = 26/75 (34.67%), Postives = 44/75 (58.67%), Query Frame = 1

Query:   34 AARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFG 258
            A RA+E +NG  ++D++ +VG+ + + ERE EL           A   +  N+Y+KN  + + D++LK+LF  FG
Sbjct:  151 AERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL----------GARAKEFTNVYIKNFGEDMDDERLKDLFGKFG 215

[Close]

BLAST of GH720296 vs. SwissProt
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.988e-19
Identity = 45/78 (57.69%), Postives = 61/78 (78.21%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            +DA +AVE +NGK+I  K  +VG+AQKK ER+ ELK+KFEQ  +E   +YQG NLY+KNLDD+I D+KL++ FS FG+
Sbjct:  242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGS 319

HSP 2 Score: 55.0694 bits (131), Expect = 1.337e-7
Identity = 29/79 (36.71%), Postives = 48/79 (60.76%), Query Frame = 1

Query:   25 TDDAA-RAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFG 258
            T +AA +A+E +NG  ++D++ +VG+ + + ERE EL  K ++            N+Y+KN  + + D+ LKELFS FG
Sbjct:  147 TQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF----------TNVYIKNFGEEVDDESLKELFSQFG 215

[Close]

BLAST of GH720296 vs. SwissProt
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.597e-19
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFG 258
            +DA++AV+ LN K+   +  YVG+AQKK ERE EL++ +E + +E A KYQG NLY+KNLDD + D+KL++LFS FG
Sbjct:  294 EDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFG 370

[Close]

BLAST of GH720296 vs. TAIR peptide
Match: AT1G49760.2 (| Symbols: PAB8 | poly(A) binding protein 8 | chr1:18416740-18419753 FORWARD LENGTH=671)

HSP 1 Score: 132.109 bits (331), Expect = 6.742e-32
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 1

Query:   25 TDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            +DDAARAV+ALNGK  DDKEW+VGKAQKKSERE ELKQKFEQS+KEAADK QG+NLYVKNLD+S+ DDKL+E F+ FGT
Sbjct:  274 SDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGT 352

HSP 2 Score: 50.8322 bits (120), Expect = 1.975e-7
Identity = 28/79 (35.44%), Postives = 47/79 (59.49%), Query Frame = 1

Query:   25 TDDAAR-AVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFG 258
            TD+AA+ A++ LNG  ++DK+ YVG    K +R+             + +K +  N+YVKNL +S+ D++L ++F  FG
Sbjct:  182 TDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRD------------PSGEKVKFTNVYVKNLSESLSDEELNKVFGEFG 248

[Close]

BLAST of GH720296 vs. TAIR peptide
Match: AT1G49760.1 (| Symbols: PAB8, PABP8 | poly(A) binding protein 8 | chr1:18416740-18419753 FORWARD LENGTH=671)

HSP 1 Score: 132.109 bits (331), Expect = 6.742e-32
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 1

Query:   25 TDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            +DDAARAV+ALNGK  DDKEW+VGKAQKKSERE ELKQKFEQS+KEAADK QG+NLYVKNLD+S+ DDKL+E F+ FGT
Sbjct:  274 SDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGT 352

HSP 2 Score: 50.8322 bits (120), Expect = 1.975e-7
Identity = 28/79 (35.44%), Postives = 47/79 (59.49%), Query Frame = 1

Query:   25 TDDAAR-AVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFG 258
            TD+AA+ A++ LNG  ++DK+ YVG    K +R+             + +K +  N+YVKNL +S+ D++L ++F  FG
Sbjct:  182 TDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRD------------PSGEKVKFTNVYVKNLSESLSDEELNKVFGEFG 248

[Close]

BLAST of GH720296 vs. TAIR peptide
Match: AT4G34110.1 (| Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629)

HSP 1 Score: 125.561 bits (314), Expect = 6.311e-30
Identity = 59/78 (75.64%), Postives = 70/78 (89.74%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            DDAARAVE+LNG K DDKEWYVG+AQKKSERE EL+ ++EQ++KEAADK+Q +NLYVKNLD SI D+KLKE+FS FGT
Sbjct:  266 DDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGT 343

HSP 2 Score: 52.7582 bits (125), Expect = 5.198e-8
Identity = 28/77 (36.36%), Postives = 42/77 (54.55%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFG 258
            + A +A+E LNG  ++DK+ YVG   ++ ER+              A+K +  N+YVKNL +S  DD LK  F  +G
Sbjct:  175 ESAQKAIEKLNGMLLNDKQVYVGPFLRRQERD------------STANKTKFTNVYVKNLAESTTDDDLKNAFGEYG 239

[Close]

BLAST of GH720296 vs. TAIR peptide
Match: AT2G23350.1 (| Symbols: PAB4, PABP4 | poly(A) binding protein 4 | chr2:9943209-9946041 FORWARD LENGTH=662)

HSP 1 Score: 119.398 bits (298), Expect = 4.522e-28
Identity = 54/78 (69.23%), Postives = 66/78 (84.62%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            +DAARAVEALNGKK DDKEWYVGKAQKKSERE EL +++EQ   +  +K+ G NLYVKNLDD++ D+KL+ELF+ FGT
Sbjct:  276 EDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGT 353

HSP 2 Score: 60.8474 bits (146), Expect = 1.909e-10
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            D A  A+E LNGK ++DK+ +VG   +K ERE             AADK +  N+YVKNL ++  DD+LK  F  +G+
Sbjct:  185 DSAKNAIEKLNGKVLNDKQIFVGPFLRKEERE------------SAADKMKFTNVYVKNLSEATTDDELKTTFGQYGS 250

[Close]

BLAST of GH720296 vs. TAIR peptide
Match: AT1G22760.1 (| Symbols: PAB3 | poly(A) binding protein 3 | chr1:8055599-8058799 FORWARD LENGTH=660)

HSP 1 Score: 95.9005 bits (237), Expect = 5.355e-21
Identity = 47/78 (60.26%), Postives = 59/78 (75.64%), Query Frame = 1

Query:   25 TDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFG 258
            T+ AA AVE +NG  + D   YVG+AQKKSERE EL++KFEQ      +K QGANLY+KNLDDS+ D+KLKE+FS +G
Sbjct:  279 TEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYG 356

[Close]

BLAST of GH720296 vs. TAIR peptide
Match: AT1G71770.2 (| Symbols: PAB5 | poly(A)-binding protein 5 | chr1:26990777-26993489 REVERSE LENGTH=682)

HSP 1 Score: 89.7373 bits (221), Expect = 3.837e-19
Identity = 43/75 (57.33%), Postives = 57/75 (76.00%), Query Frame = 1

Query:   34 AARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFG 258
            AA AVE +NG  + +   YVG+AQKKS+RE EL++KFEQ      +K QG+NLY+KNLDDS+ D+KLKE+FS +G
Sbjct:  292 AAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYG 366

[Close]

BLAST of GH720296 vs. TAIR peptide
Match: AT1G71770.1 (| Symbols: PAB5 | poly(A)-binding protein 5 | chr1:26990777-26993489 REVERSE LENGTH=682)

HSP 1 Score: 89.7373 bits (221), Expect = 3.837e-19
Identity = 43/75 (57.33%), Postives = 57/75 (76.00%), Query Frame = 1

Query:   34 AARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFG 258
            AA AVE +NG  + +   YVG+AQKKS+RE EL++KFEQ      +K QG+NLY+KNLDDS+ D+KLKE+FS +G
Sbjct:  292 AAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYG 366

[Close]

BLAST of GH720296 vs. TAIR peptide
Match: AT1G34140.1 (| Symbols: PAB1 | poly(A) binding protein 1 | chr1:12433356-12434735 REVERSE LENGTH=407)

HSP 1 Score: 77.411 bits (189), Expect = 1.971e-15
Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 1

Query:   34 AARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFE-QSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            A  A+E +NG  +D+KE +VG+AQ+K+ R  +LK KFE + +       +G NLYVKNLDDS+ + KL+ELFS FGT
Sbjct:  172 AVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGT 248

[Close]

BLAST of GH720296 vs. TAIR peptide
Match: AT2G36660.1 (| Symbols: PAB7 | poly(A) binding protein 7 | chr2:15361476-15364398 REVERSE LENGTH=609)

HSP 1 Score: 67.3958 bits (163), Expect = 2.039e-12
Identity = 32/78 (41.03%), Postives = 54/78 (69.23%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFGT 261
            +DA RA E +NG K   K  YVG+AQKK+ERE  L+++F++  +E     + +N+YVKN++ ++ +++L++ FS  GT
Sbjct:  252 EDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGT 329

HSP 2 Score: 50.447 bits (119), Expect = 2.580e-7
Identity = 30/77 (38.96%), Postives = 42/77 (54.55%), Query Frame = 1

Query:   28 DDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGANLYVKNLDDSIVDDKLKELFSSFG 258
            D A  A++ LN   + DKE YVGK  KK++R             +  +KY   NLY+KNLD  + +D L+E F+ FG
Sbjct:  163 DAAHAAIQTLNSTIVADKEIYVGKFMKKTDRV------------KPEEKY--TNLYMKNLDADVSEDLLREKFAEFG 225

[Close]

BLAST of GH720296 vs. TAIR peptide
Match: AT2G15500.1 (| Symbols: | RNA-binding protein | chr2:6763707-6764751 FORWARD LENGTH=132)

HSP 1 Score: 65.855 bits (159), Expect = 5.934e-12
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 1

Query:   43 AVEALNGKKIDDKEWYVGKAQKKSEREHELKQKFEQSMKEAADKYQGAN 189
            AVE+L G   DDK+W V +AQKKSERE ELK  +EQS+KE ADK+Q  N
Sbjct:   29 AVESLKGNTFDDKQWVVDRAQKKSEREMELKVPYEQSLKEIADKFQSYN 77

The following BLAST results are available for this feature:

BLAST of GH720296 vs. TrEMBL
BLAST of GH720296 vs. SwissProt
BLAST of GH720296 vs. TAIR peptide

BLAST of GH720296 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
Q9M549_CUCSA	8.575e-32	87.18	Poly(A)-binding protein OS=Cucumis sativus PE=2 SV...	[more]
B9GHB4_POPTR	2.495e-31	85.90	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9RYE9_RICCO	9.481e-31	83.33	Polyadenylate-binding protein, putative OS=Ricinus...	[more]
D7SVT7_VITVI	1.238e-30	83.33	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9HS30_POPTR	1.238e-30	83.33	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
A9PEX9_POPTR	1.238e-30	83.33	Putative uncharacterized protein OS=Populus tricho...	[more]
D7TPF8_VITVI	3.603e-30	82.05	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9R792_RICCO	3.603e-30	83.33	Polyadenylate-binding protein, putative OS=Ricinus...	[more]
A5BR81_VITVI	3.603e-30	82.05	Putative uncharacterized protein OS=Vitis vinifera...	[more]
Q9M6E4_TOBAC	4.705e-30	82.05	Poly(A)-binding protein (Fragment) OS=Nicotiana ta...	[more]

BLAST of GH720296 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
PABP2_ARATH	8.053e-29	75.64	Polyadenylate-binding protein 2 OS=Arabidopsis tha...	[more]
PABP_COCIM	3.067e-20	60.26	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP3_ARATH	6.833e-20	60.26	Polyadenylate-binding protein 3 OS=Arabidopsis tha...	[more]
PABP1_RAT	6.833e-20	56.41	Polyadenylate-binding protein 1 OS=Rattus norvegic...	[more]
PABP1_PONAB	6.833e-20	56.41	Polyadenylate-binding protein 1 OS=Pongo abelii GN...	[more]
PABP1_MOUSE	6.833e-20	56.41	Polyadenylate-binding protein 1 OS=Mus musculus GN...	[more]
PABP1_HUMAN	6.833e-20	56.41	Polyadenylate-binding protein 1 OS=Homo sapiens GN...	[more]
PABP1_BOVIN	6.833e-20	56.41	Polyadenylate-binding protein 1 OS=Bos taurus GN=P...	[more]
PABP4_HUMAN	1.988e-19	57.69	Polyadenylate-binding protein 4 OS=Homo sapiens GN...	[more]
PABP_MAGGR	2.597e-19	54.55	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]

BLAST of GH720296 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 10


Match Name	E-value	Identity	Description
AT1G49760.2	6.742e-32	79.75	\| Symbols: PAB8 \| poly(A) binding protein 8 \| chr1...	[more]
AT1G49760.1	6.742e-32	79.75	\| Symbols: PAB8, PABP8 \| poly(A) binding protein 8...	[more]
AT4G34110.1	6.311e-30	75.64	\| Symbols: PAB2, PABP2, ATPAB2 \| poly(A) binding p...	[more]
AT2G23350.1	4.522e-28	69.23	\| Symbols: PAB4, PABP4 \| poly(A) binding protein 4...	[more]
AT1G22760.1	5.355e-21	60.26	\| Symbols: PAB3 \| poly(A) binding protein 3 \| chr1...	[more]
AT1G71770.2	3.837e-19	57.33	\| Symbols: PAB5 \| poly(A)-binding protein 5 \| chr1...	[more]
AT1G71770.1	3.837e-19	57.33	\| Symbols: PAB5 \| poly(A)-binding protein 5 \| chr1...	[more]
AT1G34140.1	1.971e-15	50.65	\| Symbols: PAB1 \| poly(A) binding protein 1 \| chr1...	[more]
AT2G36660.1	2.039e-12	41.03	\| Symbols: PAB7 \| poly(A) binding protein 7 \| chr2...	[more]
AT2G15500.1	5.934e-12	63.27	\| Symbols: \| RNA-binding protein \| chr2:6763707-6...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding, alpha-beta plait	GENE3D	3.30.70.330	no description	coord: 8..46 score: 6.7e-06coord: 52..86 score: 8.6
None	No IPR available	PANTHER	PTHR10432	RNA-BINDING PROTEIN	coord: 8..85 score: 2.1
None	No IPR available	PANTHER	PTHR10432:SF69	POLYADENYLATE-BINDING PROTEIN	coord: 8..85 score: 2.1
None	No IPR available	SEG	seg	seg	coord: 1..13 score
None	No IPR available	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 8..85 score: 2.4

Properties


Property Name	Value
Singlet in analysis	Pisum sativum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GH720296 ID=GH720296; Name=GH720296; organism=Pisum sativum; type=EST; length=275bp
TATTAGCGTGGTCGCGGCCGAGGTACCGATGATGCTGCTAGGGCTGTTGA
GGCCCTTAATGGGAAAAAGATTGATGACAAGGAATGGTATGTTGGAAAAG
CTCAAAAGAAATCTGAAAGGGAGCATGAACTGAAACAAAAATTTGAGCAG
AGCATGAAAGAAGCTGCTGATAAATATCAAGGGGCAAACCTGTATGTCAA
AAATTTGGATGATAGCATTGTTGATGACAAACTTAAGGAGCTGTTCTCCT
CTTTTGGTACCTGCCCGGGCGGCCG

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf

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