AJ308130

EST Overview
NameAJ308130
Unique NameAJ308130
TypeEST
OrganismPisum sativum (pea)
Sequence length404
Libraries
Library NameType
LIBEST_009888 SSHcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Homology
[Close]
BLAST of AJ308130 vs. TrEMBL
Match: B9SUJ2_RICCO (Structural maintenance of chromosome, putative OS=Ricinus communis GN=RCOM_0573510 PE=4 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 8.265e-19
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = -3 
Query:  220 ANTQFITTTFRPELVKVADKIYGVTHKNRVSRVNVISKSDALEFINQDQTQNAE 381
            ANTQFITTTFRPELVKVADKIYGVTHKNRVSRVNV+SK DAL+FI  DQ+ NA+
Sbjct: 1193 ANTQFITTTFRPELVKVADKIYGVTHKNRVSRVNVVSKDDALDFIEHDQSHNAD 1246
[Close]
BLAST of AJ308130 vs. TrEMBL
Match: B9HQG8_POPTR (Condensin complex components subunit OS=Populus trichocarpa GN=CPE903 PE=4 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.841e-18
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = -3 
Query:  220 ANTQFITTTFRPELVKVADKIYGVTHKNRVSRVNVISKSDALEFINQDQTQNAE 381
            ANTQFITTTFRPELVKVADK+YGVTHKNRVSRVNV+SK DAL+FI  DQ+ N E
Sbjct: 1152 ANTQFITTTFRPELVKVADKLYGVTHKNRVSRVNVVSKEDALDFIEHDQSHNVE 1205
[Close]
BLAST of AJ308130 vs. TrEMBL
Match: A9PFT3_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.141e-18
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = -3 
Query:  220 ANTQFITTTFRPELVKVADKIYGVTHKNRVSRVNVISKSDALEFINQDQTQNAE 381
            ANTQFITTTFRPELVKVADK+YGVTHKNRVSRVNV+SK DA++FI  DQ+ N E
Sbjct:  194 ANTQFITTTFRPELVKVADKLYGVTHKNRVSRVNVVSKEDAIDFIEHDQSHNVE 247
[Close]
BLAST of AJ308130 vs. TrEMBL
Match: D7T0K2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_69.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00033181001 PE=4 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.138e-18
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = -3 
Query:  220 ANTQFITTTFRPELVKVADKIYGVTHKNRVSRVNVISKSDALEFINQDQTQNAE 381
            ANTQFITTTFRPELVKVADKIYGVTHKNRVS VNV+SK DAL+FI  DQ+ N +
Sbjct: 1152 ANTQFITTTFRPELVKVADKIYGVTHKNRVSHVNVVSKEDALDFIEHDQSHNTD 1205
[Close]
BLAST of AJ308130 vs. TrEMBL
Match: Q6Z6I3_ORYSJ (Putative SMC3 protein OS=Oryza sativa subsp. japonica GN=P0030G11.16 PE=4 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.549e-16
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = -3 
Query:  223 ANTQFITTTFRPELVKVADKIYGVTHKNRVSRVNVISKSDALEFINQDQTQNA 381
            A+TQFI TTFRPE+VKVADKIYGVT+KNRVS +NV+SK  AL+FI  DQTQNA
Sbjct: 1170 ADTQFIATTFRPEIVKVADKIYGVTYKNRVSYINVVSKEQALDFIGHDQTQNA 1222
[Close]
BLAST of AJ308130 vs. TrEMBL
Match: C7IYE2_ORYSJ (Os02g0133400 protein OS=Oryza sativa subsp. japonica GN=Os02g0133400 PE=4 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.549e-16
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = -3 
Query:  223 ANTQFITTTFRPELVKVADKIYGVTHKNRVSRVNVISKSDALEFINQDQTQNA 381
            A+TQFI TTFRPE+VKVADKIYGVT+KNRVS +NV+SK  AL+FI  DQTQNA
Sbjct: 1232 ADTQFIATTFRPEIVKVADKIYGVTYKNRVSYINVVSKEQALDFIGHDQTQNA 1284
[Close]
BLAST of AJ308130 vs. TrEMBL
Match: B9F2B1_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_05273 PE=4 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.549e-16
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = -3 
Query:  223 ANTQFITTTFRPELVKVADKIYGVTHKNRVSRVNVISKSDALEFINQDQTQNA 381
            A+TQFI TTFRPE+VKVADKIYGVT+KNRVS +NV+SK  AL+FI  DQTQNA
Sbjct:  360 ADTQFIATTFRPEIVKVADKIYGVTYKNRVSYINVVSKEQALDFIGHDQTQNA 412
[Close]
BLAST of AJ308130 vs. TrEMBL
Match: B8AHG0_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05744 PE=4 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.549e-16
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = -3 
Query:  223 ANTQFITTTFRPELVKVADKIYGVTHKNRVSRVNVISKSDALEFINQDQTQNA 381
            A+TQFI TTFRPE+VKVADKIYGVT+KNRVS +NV+SK  AL+FI  DQTQNA
Sbjct:  170 ADTQFIATTFRPEIVKVADKIYGVTYKNRVSYINVVSKEQALDFIGHDQTQNA 222
[Close]
BLAST of AJ308130 vs. TrEMBL
Match: Q8GU54_ORYSA (SMC3 protein OS=Oryza sativa GN=smc3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.459e-15
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = -3 
Query:  223 ANTQFITTTFRPELVKVADKIYGVTHKNRVSRVNVISKSDALEFINQDQTQNA 381
            A+TQFI TTFRPE+ KVADKIYGVTHKNRVS +NV+SK  AL+FI  DQT NA
Sbjct: 1152 ADTQFIATTFRPEIAKVADKIYGVTHKNRVSYINVVSKEQALDFIEHDQTHNA 1204
[Close]
BLAST of AJ308130 vs. TrEMBL
Match: Q6Z6I4_ORYSJ (Putative SMC3 protein OS=Oryza sativa subsp. japonica GN=P0030G11.15 PE=4 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.459e-15
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = -3 
Query:  223 ANTQFITTTFRPELVKVADKIYGVTHKNRVSRVNVISKSDALEFINQDQTQNA 381
            A+TQFI TTFRPE+ KVADKIYGVTHKNRVS +NV+SK  AL+FI  DQT NA
Sbjct: 1152 ADTQFIATTFRPEIAKVADKIYGVTHKNRVSYINVVSKEQALDFIEHDQTHNA 1204
[Close]
BLAST of AJ308130 vs. SwissProt
Match: SMC3_XENLA (Structural maintenance of chromosomes protein 3 OS=Xenopus laevis GN=smc3 PE=1 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 7.192e-9
Identity = 26/50 (52.00%), Postives = 37/50 (74.00%), Query Frame = -3 
Query:  232 ANTQFITTTFRPELVKVADKIYGVTHKNRVSRVNVISKSDALEFINQDQT 381
            ++ QFITTTFRPEL++ ADK YGV  +N+VS ++VI+   A +F+  D T
Sbjct: 1158 SHAQFITTTFRPELLESADKFYGVKFRNKVSHIDVITAEQAKDFVEDDTT 1207
[Close]
BLAST of AJ308130 vs. SwissProt
Match: SMC3_PONAB (Structural maintenance of chromosomes protein 3 OS=Pongo abelii GN=SMC3 PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 2.093e-8
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = -3 
Query:  232 NTQFITTTFRPELVKVADKIYGVTHKNRVSRVNVISKSDALEFINQDQT 378
            + QFITTTFRPEL++ ADK YGV  +N+VS ++VI+   A +F+  D T
Sbjct: 1167 HAQFITTTFRPELLESADKFYGVKFRNKVSHIDVITAEMAKDFVEDDTT 1215
[Close]
BLAST of AJ308130 vs. SwissProt
Match: SMC3_MOUSE (Structural maintenance of chromosomes protein 3 OS=Mus musculus GN=Smc3 PE=1 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 2.093e-8
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = -3 
Query:  232 NTQFITTTFRPELVKVADKIYGVTHKNRVSRVNVISKSDALEFINQDQT 378
            + QFITTTFRPEL++ ADK YGV  +N+VS ++VI+   A +F+  D T
Sbjct: 1167 HAQFITTTFRPELLESADKFYGVKFRNKVSHIDVITAEMAKDFVEDDTT 1215
[Close]
BLAST of AJ308130 vs. SwissProt
Match: SMC3_HUMAN (Structural maintenance of chromosomes protein 3 OS=Homo sapiens GN=SMC3 PE=1 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 2.093e-8
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = -3 
Query:  232 NTQFITTTFRPELVKVADKIYGVTHKNRVSRVNVISKSDALEFINQDQT 378
            + QFITTTFRPEL++ ADK YGV  +N+VS ++VI+   A +F+  D T
Sbjct: 1167 HAQFITTTFRPELLESADKFYGVKFRNKVSHIDVITAEMAKDFVEDDTT 1215
[Close]
BLAST of AJ308130 vs. SwissProt
Match: SMC3_BOVIN (Structural maintenance of chromosomes protein 3 OS=Bos taurus GN=SMC3 PE=1 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 2.093e-8
Identity = 26/49 (53.06%), Postives = 36/49 (73.47%), Query Frame = -3 
Query:  232 NTQFITTTFRPELVKVADKIYGVTHKNRVSRVNVISKSDALEFINQDQT 378
            + QFITTTFRPEL++ ADK YGV  +N+VS ++VI+   A +F+  D T
Sbjct: 1168 HAQFITTTFRPELLESADKFYGVKFRNKVSHIDVITAEMAKDFVEDDTT 1216
[Close]
BLAST of AJ308130 vs. SwissProt
Match: SUDA_EMENI (Chromosome segregation protein sudA OS=Emericella nidulans GN=sudA PE=2 SV=2)

HSP 1 Score: 55.4546 bits (132), Expect = 1.039e-7
Identity = 22/49 (44.90%), Postives = 38/49 (77.55%), Query Frame = -3 
Query:  232 NTQFITTTFRPELVKVADKIYGVTHKNRVSRVNVISKSDALEFINQDQT 378
            N QFI TTFRPE++ VA+K YGV+ + + S ++V+S+ +AL+F+ + ++
Sbjct: 1167 NGQFICTTFRPEMLHVAEKCYGVSFRQKASTIDVVSREEALKFVEEQKS 1215
[Close]
BLAST of AJ308130 vs. SwissProt
Match: SMC3_SCHPO (Structural maintenance of chromosomes protein 3 OS=Schizosaccharomyces pombe GN=psm3 PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 2.314e-7
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = -3 
Query:  247 TQFITTTFRPELVKVADKIYGVTHKNRVSRVNVISKSDALEFI 375
            +QFI TTFRPE+VKVAD  YGV   ++VS V  ISK +A+ F+
Sbjct: 1150 SQFICTTFRPEMVKVADNFYGVMFNHKVSTVESISKEEAMAFV 1192
[Close]
BLAST of AJ308130 vs. TAIR peptide
Match: AT2G27170.2 (| Symbols: TTN7, SMC3 | Structural maintenance of chromosomes (SMC) family protein | chr2:11609319-11617064 REVERSE LENGTH=1204)

HSP 1 Score: 80.1073 bits (196), Expect = 4.351e-16
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = -3 
Query:  226 TQFITTTFRPELVKVADKIYGVTHKNRVSRVNVISKSDALEFINQDQTQN 375
            TQFITTTFRPELV+VADKIYGV HKNRVS VNVISK  AL+FI +DQ+ +
Sbjct: 1154 TQFITTTFRPELVRVADKIYGVFHKNRVSIVNVISKDQALDFIEKDQSHD 1203
[Close]
BLAST of AJ308130 vs. TAIR peptide
Match: AT2G27170.1 (| Symbols: TTN7, SMC3 | Structural maintenance of chromosomes (SMC) family protein | chr2:11609319-11617064 REVERSE LENGTH=1204)

HSP 1 Score: 80.1073 bits (196), Expect = 4.351e-16
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = -3 
Query:  226 TQFITTTFRPELVKVADKIYGVTHKNRVSRVNVISKSDALEFINQDQTQN 375
            TQFITTTFRPELV+VADKIYGV HKNRVS VNVISK  AL+FI +DQ+ +
Sbjct: 1154 TQFITTTFRPELVRVADKIYGVFHKNRVSIVNVISKDQALDFIEKDQSHD 1203
The following BLAST results are available for this feature:
BLAST of AJ308130 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B9SUJ2_RICCO8.265e-1985.19Structural maintenance of chromosome, putative OS=... [more]
B9HQG8_POPTR1.841e-1883.33Condensin complex components subunit OS=Populus tr... [more]
A9PFT3_POPTR3.141e-1881.48Putative uncharacterized protein OS=Populus tricho... [more]
D7T0K2_VITVI9.138e-1881.48Whole genome shotgun sequence of line PN40024, sca... [more]
Q6Z6I3_ORYSJ6.549e-1677.36Putative SMC3 protein OS=Oryza sativa subsp. japon... [more]
C7IYE2_ORYSJ6.549e-1677.36Os02g0133400 protein OS=Oryza sativa subsp. japoni... [more]
B9F2B1_ORYSJ6.549e-1677.36Putative uncharacterized protein OS=Oryza sativa s... [more]
B8AHG0_ORYSI6.549e-1677.36Putative uncharacterized protein OS=Oryza sativa s... [more]
Q8GU54_ORYSA1.459e-1575.47SMC3 protein OS=Oryza sativa GN=smc3 PE=2 SV=1[more]
Q6Z6I4_ORYSJ1.459e-1575.47Putative SMC3 protein OS=Oryza sativa subsp. japon... [more]
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BLAST of AJ308130 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 7
Match NameE-valueIdentityDescription
SMC3_XENLA7.192e-952.00Structural maintenance of chromosomes protein 3 OS... [more]
SMC3_PONAB2.093e-853.06Structural maintenance of chromosomes protein 3 OS... [more]
SMC3_MOUSE2.093e-853.06Structural maintenance of chromosomes protein 3 OS... [more]
SMC3_HUMAN2.093e-853.06Structural maintenance of chromosomes protein 3 OS... [more]
SMC3_BOVIN2.093e-853.06Structural maintenance of chromosomes protein 3 OS... [more]
SUDA_EMENI1.039e-744.90Chromosome segregation protein sudA OS=Emericella ... [more]
SMC3_SCHPO2.314e-758.14Structural maintenance of chromosomes protein 3 OS... [more]
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BLAST of AJ308130 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT2G27170.24.351e-1678.00| Symbols: TTN7, SMC3 | Structural maintenance of ... [more]
AT2G27170.14.351e-1678.00| Symbols: TTN7, SMC3 | Structural maintenance of ... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 38..48
score
NoneNo IPR availablePANTHERPTHR18937STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBERcoord: 9..59
score: 1.4
NoneNo IPR availablePANTHERPTHR18937:SF8STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC3coord: 9..59
score: 1.4

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>AJ308130 ID=AJ308130; Name=AJ308130; organism=Pisum sativum; type=EST; length=404bp
ACGCACCACAAAGATATTAACAAAAGGTATTTACAAATTCAATAAATGGT
GGTCAAGCTTCTGAAATACTAAAATCTATGTTGCACCATTTCATAAAAGT
GAAAGTTGGAGAATTTGACAAGCATAAAAGTGCAGGTTGAAGAATTTGAC
AACTATGCTGCTGTCGTTGAAAGACCCCAAGACCGTTTCAGATCAGATCA
TGCGAGTAGAAAGTCCTTATTCAGCATTTTGAGTCTGATCCTGATTGATG
AATTCCAAAGCATCACTCTTGGATATAACATTAACACGGCTGACCCTGTT
TTTATGTGTCACTCCATATATCTTGTCAGCAACTTTAACTAGCTCTGGGC
GGAAAGTTGTTGTGATAAATTGAGTGTTTGCYAWAGTCTGCCAARGCGCC
GGAT
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