CD861246

EST Overview


Name	CD861246
Unique Name	CD861246
Type	EST
Organism	Pisum sativum (pea)
Sequence length	590

Libraries


Library Name	Type
LIBEST_014005 WP	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Homology

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BLAST of CD861246 vs. TrEMBL
Match: B9GHB4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_815675 PE=4 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.725e-53
Identity = 115/188 (61.17%), Postives = 118/188 (62.77%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVAPRXXXXXXXXXXXXQQIFYGQGPPAIIPSQPGFGYQQQLXXXXXXXXXXXXXXXXXMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRVYRYPSGRGMPDGPMPGV 566
            TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGK+VVSKPLYV LAQRKEDRRARLQAQF+QMRPVAM PSV PR            QQIFYGQ PPAIIP QPGFGYQQQL                 MV                                 RGRVYRYP GRG+PD PM GV
Sbjct:  334 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKIVVSKPLYVALAQRKEDRRARLQAQFSQMRPVAMAPSVGPRMPMYPPAGPGLGQQIFYGQAPPAIIPPQPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQRPGGRRAGAGQQSQQPVPLMQQQMLPRGRVYRYPPGRGLPDVPMTGV 521

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BLAST of CD861246 vs. TrEMBL
Match: B9RYE9_RICCO (Polyadenylate-binding protein, putative OS=Ricinus communis GN=RCOM_0812530 PE=4 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.060e-53
Identity = 114/188 (60.64%), Postives = 119/188 (63.30%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVAPRXXXXXXXXXXXXQQIFYGQGPPAIIPSQPGFGYQQQLXXXXXXXXXXXXXXXXXMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRVYRYPSGRGMPDGPMPGV 566
            TSCKVMRDPNGISRGSGFVAFSTPEEAS+AL+EMNGKMVVSKPLYV LAQRKEDRRARLQAQF+Q+RPVAM PSVAPR            QQIFYGQ PPAIIP QPGFGYQQQL                 MV                                 RGRVYRYP GRG+PD PM GV
Sbjct:  333 TSCKVMRDPNGISRGSGFVAFSTPEEASKALMEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQIRPVAMAPSVAPRMPMYPPGGPGLGQQIFYGQAPPAIIPPQPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQRPGGRRAGAAQQSQQPVPLMQQQMVPRGRVYRYPPGRGIPDVPMTGV 520

[Close]

BLAST of CD861246 vs. TrEMBL
Match: A9PEX9_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.386e-51
Identity = 114/188 (60.64%), Postives = 117/188 (62.23%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVAPRXXXXXXXXXXXXQQIFYGQGPPAIIPSQPGFGYQQQLXXXXXXXXXXXXXXXXXMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRVYRYPSGRGMPDGPMPGV 566
            TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMV SKPLYV LAQRKEDRRARLQAQF+QMRPVAM PSV  R            QQIFYGQGPPAI+P QPGFGYQQQL                 MV                                 RGRVYRYP GRG+PD PM GV
Sbjct:   99 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQMRPVAMAPSVG-RMPMYPPTGPGLGQQIFYGQGPPAIMPPQPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQRPGGRRAGTGQQSQQPVQLMQQQMLPRGRVYRYPPGRGLPDVPMTGV 285

[Close]

BLAST of CD861246 vs. TrEMBL
Match: A5BR81_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004873 PE=4 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.140e-49
Identity = 109/190 (57.37%), Postives = 116/190 (61.05%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVAPRXXXXXXXXXXXXQQIFYGQGPPAIIPSQPGFGYQQQLXXXXXXXXXXXXXXXXXMV--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRVYRYPSGRGMPDGPMPGV 566
            TSCKVMRDPNG+SRGSGFVAFS+PEEASRAL EMN KMVVSKPLYV LAQRKEDRRARLQAQF+QMRPV MPPSV PR            QQ+FYGQ PPAIIP QPGFGYQQQL                 +V                                   RGRV+RYP GRG+ D PMPGV
Sbjct:  339 TSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMNSKMVVSKPLYVALAQRKEDRRARLQAQFSQMRPVPMPPSVVPRLPMYPPSGPGLGQQMFYGQAPPAIIPPQPGFGYQQQLVPGMRPAGPPMPNFFVPIVQQGQQGQRPGGRRAGAVPMQQTQQQVPLMQQQMLPRGRVFRYPPGRGLSDVPMPGV 528

[Close]

BLAST of CD861246 vs. TrEMBL
Match: B9R792_RICCO (Polyadenylate-binding protein, putative OS=Ricinus communis GN=RCOM_1589620 PE=4 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.222e-49
Identity = 110/189 (58.20%), Postives = 114/189 (60.32%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVAPRXXXXXXXXXXXXQQIFYGQGPPAIIPSQPGFGYQQQLXXXXXXXXXXXXXXXXXMV-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRVYRYPSGRGMPDGPMPGV 566
            TSCKVMRDP+GISRGSGFVAFSTPEEASRAL EMNGKMVVSKPLYV LAQRKE+RRARLQAQF+QMRPVAM PSV PR            QQ  YGQGPP +IP Q GFGYQQQL                 MV                                  RGRVYRYP GR MPD PMPGV
Sbjct:  345 TSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVAMAPSVGPRMPIYSPGAPGMGQQFLYGQGPPTMIPPQGGFGYQQQLVPGIRPGGAPMPNFFVPMVQQGQQGQRHGGRRGAVPVQQNQQPVPLMHQQMLPRGRVYRYPPGRNMPDVPMPGV 533

[Close]

BLAST of CD861246 vs. TrEMBL
Match: Q1EMR9_PLAMJ (PolyA-binding protein (Fragment) OS=Plantago major GN=pabp1 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.573e-48
Identity = 106/188 (56.38%), Postives = 118/188 (62.77%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVAPRXXXXXXXXXXXXQQIFYGQGPPAIIPSQPGFGYQQQLXXXXXXXXXXXXXXXXXMV-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRVYRYPSGRGMPDGPMPG 563
            TSCKVMRDP+GISRGSGFVAFSTPEE++RAL EMNGKMV+SKPLYV LAQRKE+RRARLQAQF+QMRPVAMPPS+APR            QQ+FYGQGPPA+IPSQ GFGYQQQL                 MV                                  RGR+YR+P GR +PD PM G
Sbjct:    3 TSCKVMRDPSGISRGSGFVAFSTPEESARALSEMNGKMVISKPLYVALAQRKEERRARLQAQFSQMRPVAMPPSIAPRMPMYPPGAPGIGQQLFYGQGPPAMIPSQAGFGYQQQLVPGMRPGGTPMPNFFMPMVQQGQQGQRPGGRRGGGPMQQAQQPVPVMQQQMMPRGRMYRFPPGRNVPDVPMTG 190

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BLAST of CD861246 vs. TrEMBL
Match: A5B5N0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017035 PE=4 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.573e-48
Identity = 110/190 (57.89%), Postives = 116/190 (61.05%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVAPRXXXXXXXXXXXXQQIFYGQGPPAIIPSQPGFGYQQQLXXXXXXXXXXXXXXXXXMV--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRVYRYPSGRGMPDGPMPGV 566
            TSCKVMRDP+GISRGSGFVAFST EEASRAL EMNGKMVVSKPLYV LAQRKE+RRARLQAQF+QMRPV+M PSVAPR            QQ+FYGQGPPAIIP Q GFGYQQQL                 +V                                    GRVYRYP GR MPD PMPGV
Sbjct:  327 TSCKVMRDPSGISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPVSMAPSVAPRMPMYPPGAPGLGQQLFYGQGPPAIIPPQAGFGYQQQLVPGMRPGGAPMPNFFVPLVQQGQQGQRPGGRRGAGPVQQNQQPVPLMQQQMLPRGGRVYRYPPGRNMPDVPMPGV 516

[Close]

BLAST of CD861246 vs. TrEMBL
Match: D7TPF8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_63.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00031709001 PE=4 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.054e-48
Identity = 107/193 (55.44%), Postives = 117/193 (60.62%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVAPRXXXXXXXXXXXXQQIFYGQGPPAIIPSQPGFGYQQQLXXXXXXXXXXXXXXXXXMV--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRVYRYPSGRGMPDGPMPGVVEA 575
            TSCKVMRDPNG+SRGSGFVAFS+PEEASRAL EMN KMVVSKPLYV LAQRKEDRRARLQAQF+QMRPV MPPSV PR            QQ+FYGQ PPAIIP QPGFGYQQQL                 +V                                   RGRV+RYP GRG+ D PMP + ++
Sbjct:  478 TSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMNSKMVVSKPLYVALAQRKEDRRARLQAQFSQMRPVPMPPSVVPRLPMYPPSGPGLGQQMFYGQAPPAIIPPQPGFGYQQQLVPGMRPAGPPMPNFFVPIVQQGQQGQRPGGRRAGAVPMQQTQQQVPLMQQQMLPRGRVFRYPPGRGLSDVPMPAISQS 670

[Close]

BLAST of CD861246 vs. TrEMBL
Match: Q9M549_CUCSA (Poly(A)-binding protein OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.577e-48
Identity = 108/189 (57.14%), Postives = 116/189 (61.38%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVAPR-XXXXXXXXXXXXQQIFYGQGPPAIIPSQPGFGYQQQLXXXXXXXXXXXXXXXXXMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRVYRYPSGRGMPDGPMPGV 566
            TSCKVMRDPNGISRGSGFVAFS+PEEA+RAL EMNG+M+VSKPLYV LAQRKEDR ARLQAQF+QM+P+AM  SVAPR             QQIFYGQ PP II SQPGFGYQQQL                 MV                                 RGRVYRYP GRG+PD PMPGV
Sbjct:  338 TSCKVMRDPNGISRGSGFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRIARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGV 526

[Close]

BLAST of CD861246 vs. TrEMBL
Match: D7SVT7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_31.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00022079001 PE=4 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.577e-48
Identity = 108/190 (56.84%), Postives = 113/190 (59.47%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVAPRXXXXXXXXXXXXQQIFYGQGPPAIIPSQPGFGYQQQLXXXXXXXXXXXXXXXXXMV--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRVYRYPSGRGMPDGPMPGV 566
            TSCKVMRDPNGISRGSGFVAFST EEASRAL +MNGKMV SKPLYV LAQRKEDRRARLQAQF+QMRP AM PSV PR            QQ+FYGQGPPA+IP QPGFGYQ QL                 MV                                   RGRVYRYP GR M D P+PGV
Sbjct:  341 TSCKVMRDPNGISRGSGFVAFSTAEEASRALADMNGKMVASKPLYVALAQRKEDRRARLQAQFSQMRPAAMAPSVGPRMSMYPPGAPGLGQQLFYGQGPPALIPPQPGFGYQHQLVPGMRPGAAPMPNFFVPMVQPGQPNQRPGGRRSGTGPVQQTQQPLPLMQQQMLPRGRVYRYPPGRNMADVPIPGV 530

[Close]

BLAST of CD861246 vs. SwissProt
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.812e-40
Identity = 89/179 (49.72%), Postives = 105/179 (58.66%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVAPRXXXXXXXXXXXXQQIFYGQGPPAIIPSQPGFGYQQQLXXXXXXXXXXXXXXXXXMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRVYRYPSGRG 539
            TS KVMRDPNG S+GSGFVAF+TPEEA+ A+ +++GKM+ SKPLYV +AQRKEDRR RLQAQF+Q+RPVAM PSV PR            QQ+FYGQ PPA+IP QPG+GYQQQL                 MV                                 RGR++RYP GRG
Sbjct:  345 TSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPSFFMPMV-QPQQQRPGGGRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGRG 522

[Close]

BLAST of CD861246 vs. SwissProt
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.402e-23
Identity = 60/115 (52.17%), Postives = 76/115 (66.09%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVAPRXXXXXXXXXXXXQQIFYGQGPPAIIPSQP-GFGYQQQ 344
            TS KVM +P G+SRG GFVA+S PEEA RAL EMNGKM+  KPLY+ LAQRKEDRRA LQA F+Q+R    P  ++              Q ++ GQ   +++PSQP G+G+Q Q
Sbjct:  359 TSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIR---APGPMSGFHHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQ 470

[Close]

BLAST of CD861246 vs. SwissProt
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 7.695e-22
Identity = 59/120 (49.17%), Postives = 73/120 (60.83%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMR-PVAMPPSVAP----RXXXXXXXXXXXXQQIFYGQGPPAIIPSQP-GFGYQQQ 344
            TSCKVM +  G+SRG GFVA+S PEEA  A+ EMNGKM+  KPLYV LAQRKE+R+A LQ+ F Q+R P  M P  +P                   +F G     ++PSQP G+GYQ Q
Sbjct:  355 TSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYGYQVQ 474

HSP 2 Score: 53.9138 bits (128), Expect = 6.992e-7
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMR 203
            +S  VM+D +G SR  GFV F +PE A+ A+ +MNG  +    LYV  AQ+K DR   L+ +F Q R
Sbjct:  252 SSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQER 318

[Close]

BLAST of CD861246 vs. SwissProt
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.358e-18
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVAPRXXXXXXXXXXXXQQIFYGQGPPAIIPSQPG 326
            TSCK+MR P+G+SRG GFV +S PEEA++A+ EMNGKM+ ++PLYV LAQRK+ RR +L+AQ  Q   + +    A +              ++Y Q  P   P QPG
Sbjct:  357 TSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQLEAQIMQRNQLRLQQQAAAQGMGYPGPG------MYYPQ--PGAFPGQPG 456

[Close]

BLAST of CD861246 vs. SwissProt
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.453e-17
Identity = 41/65 (63.08%), Postives = 54/65 (83.08%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQ 197
            TS KVMRD +G+SRG GFV +S+P+EA++A+ EMNGKM+ +KPLYV LAQRK+ RR  L++Q AQ
Sbjct:  357 TSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQ 421

[Close]

BLAST of CD861246 vs. SwissProt
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 82.0333 bits (201), Expect = 2.397e-15
Identity = 44/104 (42.31%), Postives = 58/104 (55.77%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVAPRXXXXXXXXXXXXQQIFYGQGPPAIIP 314
            TS KVMR  NG S+G GFV FSTPEEA++A+ E N ++V  KPLYV +AQRK+ RR++L  Q      +    + A                +FYG  PP  +P
Sbjct:  349 TSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMFYGVMPPRGVP 452

[Close]

BLAST of CD861246 vs. SwissProt
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.341e-15
Identity = 51/114 (44.74%), Postives = 68/114 (59.65%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQ----MRPVAMP---PSVAPRXXXXXXXXXXXXQQIFYGQGPPAIIPSQP 323
            TS KVM +  G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV LAQRKE+R+A L  Q+ Q    MR ++ P       P             Q  +YG GP  + P+QP
Sbjct:  321 TSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPPAQAAYYGCGP--VTPTQP 431

HSP 2 Score: 58.5362 bits (140), Expect = 2.839e-8
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 3

Query:    6 SCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMR 203
            S KVMRD +G SR  GFV F   EEA +A++ MNGK V  + LY   AQ++ +R+  L+ +F QM+
Sbjct:  219 SVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284

[Close]

BLAST of CD861246 vs. SwissProt
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 6.976e-15
Identity = 46/110 (41.82%), Postives = 62/110 (56.36%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVAPRXXXXXXXXXXXXQQIFYGQGPPAIIPSQPGFG 332
            TS +VM D  G S+G GFV FS+PEEA++A+ EMN +M+  KPLYV LAQRK+ RR++L+ Q      + M  + A                +FYGQ P    P+  G G
Sbjct:  362 TSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQNAAA-----TGGIPGQFIPPMFYGQQPGFFPPNGRGNG 466

[Close]

BLAST of CD861246 vs. SwissProt
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.190e-14
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVA 230
            TS K+M D  G S+G GFV ++TPEEA++A+ EMN +M+  KPLYV LAQRKE RR++L+AQ        +   VA
Sbjct:  391 TSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVA 466

[Close]

BLAST of CD861246 vs. SwissProt
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.030e-14
Identity = 43/76 (56.58%), Postives = 56/76 (73.68%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQ-MRPVAMPPSV 227
            TS KVM +  G S+G GFV FS+PEEA++A+ EMNG++V +KPLYV LAQRKE+R+A L  Q+ Q M  V +P  V
Sbjct:  321 TSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPNPV 395

HSP 2 Score: 60.077 bits (144), Expect = 9.756e-9
Identity = 30/66 (45.45%), Postives = 45/66 (68.18%), Query Frame = 3

Query:    6 SCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMR 203
            S KVM D +G SRG GFV+F   E+A +A+ +MNGK +  K ++V  AQ+K +R+  L+ +F QM+
Sbjct:  219 SVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMK 284

[Close]

BLAST of CD861246 vs. TAIR peptide
Match: AT1G49760.2 (| Symbols: PAB8 | poly(A) binding protein 8 | chr1:18416740-18419753 FORWARD LENGTH=671)

HSP 1 Score: 178.718 bits (452), Expect = 1.980e-45
Identity = 87/115 (75.65%), Postives = 98/115 (85.22%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVAPRXXXXXXXXXXXXQQIFYGQGPPAIIPSQPGFGYQQQL 347
            TSCKVMRDP+G+SRGSGFVAFSTPEEA+RA+ EMNGKM+V+KPLYV LAQRKEDR+ARLQAQF+QMRPV MPP+V PR            QQ+FYGQGPPA+IP QPGFGYQQQL
Sbjct:  354 TSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPAMIP-QPGFGYQQQL 467

HSP 2 Score: 56.9954 bits (136), Expect = 8.688e-9
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQ 197
            TSC +MRD  G S+G GFV F   ++A+RA+  +NGK    K  +V  AQ+K +R   L+ +F Q
Sbjct:  251 TSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQ 315

[Close]

BLAST of CD861246 vs. TAIR peptide
Match: AT1G49760.1 (| Symbols: PAB8, PABP8 | poly(A) binding protein 8 | chr1:18416740-18419753 FORWARD LENGTH=671)

HSP 1 Score: 178.718 bits (452), Expect = 1.980e-45
Identity = 87/115 (75.65%), Postives = 98/115 (85.22%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVAPRXXXXXXXXXXXXQQIFYGQGPPAIIPSQPGFGYQQQL 347
            TSCKVMRDP+G+SRGSGFVAFSTPEEA+RA+ EMNGKM+V+KPLYV LAQRKEDR+ARLQAQF+QMRPV MPP+V PR            QQ+FYGQGPPA+IP QPGFGYQQQL
Sbjct:  354 TSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPAMIP-QPGFGYQQQL 467

HSP 2 Score: 56.9954 bits (136), Expect = 8.688e-9
Identity = 28/65 (43.08%), Postives = 40/65 (61.54%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQ 197
            TSC +MRD  G S+G GFV F   ++A+RA+  +NGK    K  +V  AQ+K +R   L+ +F Q
Sbjct:  251 TSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQ 315

[Close]

BLAST of CD861246 vs. TAIR peptide
Match: AT2G23350.1 (| Symbols: PAB4, PABP4 | poly(A) binding protein 4 | chr2:9943209-9946041 FORWARD LENGTH=662)

HSP 1 Score: 167.548 bits (423), Expect = 4.564e-42
Identity = 99/188 (52.66%), Postives = 104/188 (55.32%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVAPRXXXXXXXXXXXXQQIFYGQGPPAIIPSQPGFGYQQQLXXXXXXXXXXXXXXXXXMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRVYRYPS-GRGMPDGPMPG 563
            TSCKVMRDP+G S+GSGFVAFS   EASR L EMNGKMV  KPLYV LAQRKE+RRA+LQAQF+QMRP A  P V PR            QQIFYGQGPP IIP QPGFGYQ QL                                                    RGR YRYPS GR MPDGPMPG
Sbjct:  355 TSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRP-AFIPGVGPRMPIFTGGAPGLGQQIFYGQGPPPIIPHQPGFGYQPQLVPGMRPAFFGGPMMQPGQ--QGPRPGGRRSGDGPMRHQHQQPMPYMQPQMMPRGRGYRYPSGGRNMPDGPMPG 539

HSP 2 Score: 54.6842 bits (130), Expect = 4.312e-8
Identity = 29/65 (44.62%), Postives = 39/65 (60.00%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQ 197
            +S  VMRD +G SR  GFV F  PE+A+RA+  +NGK    K  YV  AQ+K +R   L  ++ Q
Sbjct:  252 SSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQ 316

[Close]

BLAST of CD861246 vs. TAIR peptide
Match: AT4G34110.1 (| Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629)

HSP 1 Score: 164.851 bits (416), Expect = 2.958e-41
Identity = 89/179 (49.72%), Postives = 105/179 (58.66%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVAPRXXXXXXXXXXXXQQIFYGQGPPAIIPSQPGFGYQQQLXXXXXXXXXXXXXXXXXMVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRVYRYPSGRG 539
            TS KVMRDPNG S+GSGFVAF+TPEEA+ A+ +++GKM+ SKPLYV +AQRKEDRR RLQAQF+Q+RPVAM PSV PR            QQ+FYGQ PPA+IP QPG+GYQQQL                 MV                                 RGR++RYP GRG
Sbjct:  345 TSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPSFFMPMV-QPQQQRPGGGRRPGGIQHSQQQNPMMQQQMHPRGRMFRYPQGRG 522

HSP 2 Score: 51.9878 bits (123), Expect = 2.795e-7
Identity = 26/65 (40.00%), Postives = 38/65 (58.46%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQ 197
            TS  VM+D  G S+G GFV F   ++A+RA+  +NG     K  YV  AQ+K +R   L+ ++ Q
Sbjct:  242 TSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQ 306

[Close]

BLAST of CD861246 vs. TAIR peptide
Match: AT1G22760.1 (| Symbols: PAB3 | poly(A) binding protein 3 | chr1:8055599-8058799 FORWARD LENGTH=660)

HSP 1 Score: 109.383 bits (272), Expect = 1.475e-24
Identity = 60/115 (52.17%), Postives = 76/115 (66.09%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVAPRXXXXXXXXXXXXQQIFYGQGPPAIIPSQP-GFGYQQQ 344
            TS KVM +P G+SRG GFVA+S PEEA RAL EMNGKM+  KPLY+ LAQRKEDRRA LQA F+Q+R    P  ++              Q ++ GQ   +++PSQP G+G+Q Q
Sbjct:  359 TSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIR---APGPMSGFHHPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQ 470

[Close]

BLAST of CD861246 vs. TAIR peptide
Match: AT1G71770.2 (| Symbols: PAB5 | poly(A)-binding protein 5 | chr1:26990777-26993489 REVERSE LENGTH=682)

HSP 1 Score: 103.605 bits (257), Expect = 8.094e-23
Identity = 59/120 (49.17%), Postives = 73/120 (60.83%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMR-PVAMPPSVAP----RXXXXXXXXXXXXQQIFYGQGPPAIIPSQP-GFGYQQQ 344
            TSCKVM +  G+SRG GFVA+S PEEA  A+ EMNGKM+  KPLYV LAQRKE+R+A LQ+ F Q+R P  M P  +P                   +F G     ++PSQP G+GYQ Q
Sbjct:  369 TSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYGYQVQ 488

HSP 2 Score: 53.9138 bits (128), Expect = 7.355e-8
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMR 203
            +S  VM+D +G SR  GFV F +PE A+ A+ +MNG  +    LYV  AQ+K DR   L+ +F Q R
Sbjct:  266 SSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQER 332

[Close]

BLAST of CD861246 vs. TAIR peptide
Match: AT1G71770.1 (| Symbols: PAB5 | poly(A)-binding protein 5 | chr1:26990777-26993489 REVERSE LENGTH=682)

HSP 1 Score: 103.605 bits (257), Expect = 8.094e-23
Identity = 59/120 (49.17%), Postives = 73/120 (60.83%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMR-PVAMPPSVAP----RXXXXXXXXXXXXQQIFYGQGPPAIIPSQP-GFGYQQQ 344
            TSCKVM +  G+SRG GFVA+S PEEA  A+ EMNGKM+  KPLYV LAQRKE+R+A LQ+ F Q+R P  M P  +P                   +F G     ++PSQP G+GYQ Q
Sbjct:  369 TSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYGYQVQ 488

HSP 2 Score: 53.9138 bits (128), Expect = 7.355e-8
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMR 203
            +S  VM+D +G SR  GFV F +PE A+ A+ +MNG  +    LYV  AQ+K DR   L+ +F Q R
Sbjct:  266 SSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQER 332

[Close]

BLAST of CD861246 vs. TAIR peptide
Match: AT1G34140.1 (| Symbols: PAB1 | poly(A) binding protein 1 | chr1:12433356-12434735 REVERSE LENGTH=407)

HSP 1 Score: 85.5001 bits (210), Expect = 2.281e-17
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRP 206
            TSCKVM   NGIS+G GFV FST EEAS+A+L+MNGKMV +KP+YV+LAQ KE  +  LQ QF    P
Sbjct:  250 TSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQFNNPPP 317

HSP 2 Score: 50.8322 bits (120), Expect = 6.226e-7
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQF 191
            TS  VM+D  G SR  GFV F   E A  A+ +MNG +V  K L+V  AQRK +R   L+A+F
Sbjct:  146 TSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKF 208

[Close]

BLAST of CD861246 vs. TAIR peptide
Match: AT2G36660.1 (| Symbols: PAB7 | poly(A) binding protein 7 | chr2:15361476-15364398 REVERSE LENGTH=609)

HSP 1 Score: 72.4034 bits (176), Expect = 1.998e-13
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQF 191
            TS K+M D  G S+G GFV FSTPEEA  A+   +G+M   KPLYV +AQ+KEDR+ +LQ QF
Sbjct:  331 TSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQF 393

HSP 2 Score: 50.447 bits (119), Expect = 8.132e-7
Identity = 27/64 (42.19%), Postives = 36/64 (56.25%), Query Frame = 3

Query:    6 SCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQ 197
            S  + +D N + RG  FV F  PE+A RA   +NG    SK LYV  AQ+K +R   L+ QF +
Sbjct:  229 SLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKE 292

[Close]

BLAST of CD861246 vs. TAIR peptide
Match: AT3G16380.1 (| Symbols: PAB6 | poly(A) binding protein 6 | chr3:5558676-5560993 REVERSE LENGTH=537)

HSP 1 Score: 62.3882 bits (150), Expect = 2.068e-10
Identity = 37/74 (50.00%), Postives = 45/74 (60.81%), Query Frame = 3

Query:    6 SCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQF-AQMRPVAMPPS 224
            S KVM   NG S+G GFV FS  EE+ +A   +NG +V  KP+ V +A+RKEDR  RLQ  F AQ R     PS
Sbjct:  332 SAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRLQQYFQAQPRQYTQAPS 405

HSP 2 Score: 51.9878 bits (123), Expect = 2.795e-7
Identity = 28/64 (43.75%), Postives = 40/64 (62.50%), Query Frame = 3

Query:    3 TSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFA 194
            +S  VMRD  G SRG GFV F  PE A +A+  + G  + SK L+V  A +K++RR  L+ +F+
Sbjct:  229 SSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFS 292

The following BLAST results are available for this feature:

BLAST of CD861246 vs. TrEMBL
BLAST of CD861246 vs. SwissProt
BLAST of CD861246 vs. TAIR peptide

BLAST of CD861246 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B9GHB4_POPTR	4.725e-53	61.17	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9RYE9_RICCO	8.060e-53	60.64	Polyadenylate-binding protein, putative OS=Ricinus...	[more]
A9PEX9_POPTR	3.386e-51	60.64	Putative uncharacterized protein OS=Populus tricho...	[more]
A5BR81_VITVI	4.140e-49	57.37	Putative uncharacterized protein OS=Vitis vinifera...	[more]
B9R792_RICCO	9.222e-49	58.20	Polyadenylate-binding protein, putative OS=Ricinus...	[more]
Q1EMR9_PLAMJ	1.573e-48	56.38	PolyA-binding protein (Fragment) OS=Plantago major...	[more]
A5B5N0_VITVI	1.573e-48	57.89	Putative uncharacterized protein OS=Vitis vinifera...	[more]
D7TPF8_VITVI	2.054e-48	55.44	Whole genome shotgun sequence of line PN40024, sca...	[more]
Q9M549_CUCSA	4.577e-48	57.14	Poly(A)-binding protein OS=Cucumis sativus PE=2 SV...	[more]
D7SVT7_VITVI	4.577e-48	56.84	Whole genome shotgun sequence of line PN40024, sca...	[more]

BLAST of CD861246 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
PABP2_ARATH	2.812e-40	49.72	Polyadenylate-binding protein 2 OS=Arabidopsis tha...	[more]
PABP3_ARATH	1.402e-23	52.17	Polyadenylate-binding protein 3 OS=Arabidopsis tha...	[more]
PABP5_ARATH	7.695e-22	49.17	Polyadenylate-binding protein 5 OS=Arabidopsis tha...	[more]
PABP_USTMA	1.358e-18	45.37	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_CRYNE	7.453e-17	63.08	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_YEAST	2.397e-15	42.31	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PAP1L_HUMAN	5.341e-15	44.74	Polyadenylate-binding protein 1-like OS=Homo sapie...	[more]
PABP_DEBHA	6.976e-15	41.82	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_SCHPO	1.190e-14	51.32	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABPB_XENLA	2.030e-14	56.58	Polyadenylate-binding protein 1-B OS=Xenopus laevi...	[more]

BLAST of CD861246 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 10


Match Name	E-value	Identity	Description
AT1G49760.2	1.980e-45	75.65	\| Symbols: PAB8 \| poly(A) binding protein 8 \| chr1...	[more]
AT1G49760.1	1.980e-45	75.65	\| Symbols: PAB8, PABP8 \| poly(A) binding protein 8...	[more]
AT2G23350.1	4.564e-42	52.66	\| Symbols: PAB4, PABP4 \| poly(A) binding protein 4...	[more]
AT4G34110.1	2.958e-41	49.72	\| Symbols: PAB2, PABP2, ATPAB2 \| poly(A) binding p...	[more]
AT1G22760.1	1.475e-24	52.17	\| Symbols: PAB3 \| poly(A) binding protein 3 \| chr1...	[more]
AT1G71770.2	8.094e-23	49.17	\| Symbols: PAB5 \| poly(A)-binding protein 5 \| chr1...	[more]
AT1G71770.1	8.094e-23	49.17	\| Symbols: PAB5 \| poly(A)-binding protein 5 \| chr1...	[more]
AT1G34140.1	2.281e-17	63.24	\| Symbols: PAB1 \| poly(A) binding protein 1 \| chr1...	[more]
AT2G36660.1	1.998e-13	57.14	\| Symbols: PAB7 \| poly(A) binding protein 7 \| chr2...	[more]
AT3G16380.1	2.068e-10	50.00	\| Symbols: PAB6 \| poly(A) binding protein 6 \| chr3...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 17..38 score
None	No IPR available	SEG	seg	seg	coord: 93..109 score
None	No IPR available	PANTHER	PTHR10432	RNA-BINDING PROTEIN	coord: 1..193 score: 2.9
None	No IPR available	PANTHER	PTHR10432:SF52	POLY(A) BINDING PROTEIN	coord: 1..193 score: 2.9
None	No IPR available	SEG	seg	seg	coord: 79..90 score: NAcoord: 116..132 score: NAcoord: 135..167 score
None	No IPR available	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 1..71 score: 2.2
None	No IPR available	SEG	seg	seg	coord: 48..62 score
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 2..44 score: 2.9
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 1..51 score: 11
IPR012677	Nucleotide-binding, alpha-beta plait	GENE3D	3.30.70.330	no description	coord: 1..56 score: 2.9

Properties


Property Name	Value
Singlet in analysis	Pisum sativum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CD861246 ID=CD861246; Name=CD861246; organism=Pisum sativum; type=EST; length=590bp
TTACCTCTTGCAAGGTAATGAGAGACCCCAATGGCATAAGTCGAGGATCT
GGGTTCGTTGCATTCTCTACTCCTGAGGAGGCATCTAGAGCACTCTTGGA
GATGAATGGCAAAATGGTGGTAAGCAAACCTTTGTATGTGACTCTGGCCC
AACGGAAAGAAGATAGAAGAGCTAGGCTGCAGGCTCAATTTGCTCAAATG
CGTCCTGTTGCGATGCCCCCATCTGTTGCTCCTCGCATGCCTATGTATCC
CCCTGGTGGTCCAGGTATGGGTCAACAAATATTTTATGGTCAAGGCCCTC
CTGCCATCATTCCTTCCCAGCCTGGATTTGGGTATCAACAACAACTTGTG
CCTGGAATGAGGCCTGGTGGGGGTCCTGTGCCAAATTTCTTTGTGCCAAT
GGTTCAGCAGGGACAGCAAGGGCAGCGTCCTGGTGGAAGACGTGGAGGTG
CAGTCCAGCAGTCCCAGCAGCCAGTTCCTCTTATGCCACAACAGATGCTT
CCTAGGGGGCGTGTGTATCGCTATCCTTCTGGTAGGGGCATGCCTGATGG
TCCCATGCCTGGAGTTGTGGAGGCATGTATTCTGTTCCTT

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

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