CD860389

EST Overview
NameCD860389
Unique NameCD860389
TypeEST
OrganismPisum sativum (pea)
Sequence length489
Libraries
Library NameType
LIBEST_014003 TEcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Homology
BLAST of CD860389 vs. TrEMBL
Match: B7FMZ2_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.542e-12
Identity = 50/109 (45.87%), Postives = 53/109 (48.62%), Query Frame = 1
Query:  139 VLSRNETASSSITSSXXXXXXXXXQXXXXXXXXXXXXXXXH------YXXXXXXXXXXXXXXXXXXFRREVMSAGIIQESKRRKFFENTQDERKRRIRDTAKRNRRLKF 447
            VLSRNET+SSSITSS                                Y                  FRREV SAGIIQE KRRK FEN QDE+KRR+RD AKRNRR KF
Sbjct:   45 VLSRNETSSSSITSSSSITSSSSSSPEPPQDMSSSFSTSNTVFSASPYNVQIIVEDDEPEERFLNRFRREVFSAGIIQECKRRKRFENPQDEKKRRVRDAAKRNRRNKF 153          
BLAST of CD860389 vs. TrEMBL
Match: Q8VWX5_CUCSA (Ribosome-like protein (Fragment) OS=Cucumis sativus GN=rpo1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.923e-10
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 1
Query:  319 FRREVMSAGIIQESKRRKFFENTQDERKRRIRDTAKRNRR 438
            FRREVM AG+IQE KRR+FFENTQD RKR+ R+ AKRNRR
Sbjct:  114 FRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRR 153          
BLAST of CD860389 vs. TrEMBL
Match: A5AI30_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031115 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.181e-9
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 1
Query:  319 FRREVMSAGIIQESKRRKFFENTQDERKRRIRDTAKRNRR 438
            FRREVM AG+IQE KRR+FFEN QDE+KR+ R+ AKRNRR
Sbjct:  111 FRREVMRAGVIQECKRRRFFENKQDEKKRKTREAAKRNRR 150          
BLAST of CD860389 vs. TrEMBL
Match: Q9LI88_ARATH (Genomic DNA, chromosome 3, P1 clone:MYF5 OS=Arabidopsis thaliana GN=At3g27160 PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.861e-9
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1
Query:  319 FRREVMSAGIIQESKRRKFFENTQDERKRRIRDTAKRNRR 438
            FRREVM  G+IQE KRR++FEN QDE+KRR RD AKRN++
Sbjct:  104 FRREVMRTGVIQECKRRRYFENKQDEKKRRTRDAAKRNKK 143          
BLAST of CD860389 vs. TrEMBL
Match: Q94BT7_ARATH (AT3g27160/MYF5_3 OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.861e-9
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1
Query:  319 FRREVMSAGIIQESKRRKFFENTQDERKRRIRDTAKRNRR 438
            FRREVM  G+IQE KRR++FEN QDE+KRR RD AKRN++
Sbjct:  104 FRREVMRTGVIQECKRRRYFENKQDEKKRRTRDAAKRNKK 143          
BLAST of CD860389 vs. TrEMBL
Match: D7LLW6_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_484499 PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.861e-9
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1
Query:  319 FRREVMSAGIIQESKRRKFFENTQDERKRRIRDTAKRNRR 438
            FRREVM  G+IQE KRR++FEN QDE+KRR RD AKRN++
Sbjct:  104 FRREVMRTGVIQECKRRRYFENKQDEKKRRTRDAAKRNKK 143          
BLAST of CD860389 vs. TrEMBL
Match: B9RBJ4_RICCO (Structural constituent of ribosome, putative OS=Ricinus communis GN=RCOM_1677380 PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.861e-9
Identity = 28/40 (70.00%), Postives = 35/40 (87.50%), Query Frame = 1
Query:  319 FRREVMSAGIIQESKRRKFFENTQDERKRRIRDTAKRNRR 438
            FRREVM AG+IQE KRR+FFEN QDE+KR+ R+ AKRN++
Sbjct:   99 FRREVMRAGVIQECKRRRFFENKQDEKKRKTREAAKRNKK 138          
BLAST of CD860389 vs. TrEMBL
Match: A9PGV4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_549690 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.799e-8
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1
Query:  319 FRREVMSAGIIQESKRRKFFENTQDERKRRIRDTAKRNRR 438
            FRREVM AG+IQE KRR+F EN Q+E+KR++R+  KRNRR
Sbjct:  100 FRREVMRAGVIQECKRRRFHENKQEEKKRKVREAHKRNRR 139          
BLAST of CD860389 vs. TrEMBL
Match: D7SVR1_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_68.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00033105001 PE=4 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 9.357e-7
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 1
Query:  334 MSAGIIQESKRRKFFENTQDERKRRIRDTAKRNRR 438
            M AG+IQE KRR+FFEN QDE+KR+ R+ AKRNRR
Sbjct:    1 MRAGVIQECKRRRFFENKQDEKKRKTREAAKRNRR 35          
BLAST of CD860389 vs. TAIR peptide
Match: AT3G27160.1 (| Symbols: GHS1 | Ribosomal protein S21 family protein | chr3:10017531-10018854 FORWARD LENGTH=183)

HSP 1 Score: 63.929 bits (154), Expect = 4.957e-11
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1
Query:  319 FRREVMSAGIIQESKRRKFFENTQDERKRRIRDTAKRNRR 438
            FRREVM  G+IQE KRR++FEN QDE+KRR RD AKRN++
Sbjct:  104 FRREVMRTGVIQECKRRRYFENKQDEKKRRTRDAAKRNKK 143          
The following BLAST results are available for this feature:
BLAST of CD860389 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 9
Match NameE-valueIdentityDescription
B7FMZ2_MEDTR2.542e-1245.87Putative uncharacterized protein OS=Medicago trunc... [more]
Q8VWX5_CUCSA6.923e-1077.50Ribosome-like protein (Fragment) OS=Cucumis sativu... [more]
A5AI30_VITVI1.181e-975.00Putative uncharacterized protein OS=Vitis vinifera... [more]
Q9LI88_ARATH5.861e-970.00Genomic DNA, chromosome 3, P1 clone:MYF5 OS=Arabid... [more]
Q94BT7_ARATH5.861e-970.00AT3g27160/MYF5_3 OS=Arabidopsis thaliana PE=2 SV=1[more]
D7LLW6_ARALY5.861e-970.00Putative uncharacterized protein OS=Arabidopsis ly... [more]
B9RBJ4_RICCO5.861e-970.00Structural constituent of ribosome, putative OS=Ri... [more]
A9PGV4_POPTR3.799e-867.50Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7SVR1_VITVI9.357e-771.43Whole genome shotgun sequence of line PN40024, sca... [more]
back to top
BLAST of CD860389 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G27160.14.957e-1170.00| Symbols: GHS1 | Ribosomal protein S21 family pro... [more]
back to top
InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001911Ribosomal protein S21HAMAPMF_00358Ribosomal_S21coord: 89..145
score: 10
IPR001911Ribosomal protein S21PFAMPF01165Ribosomal_S21coord: 90..146
score: 1
IPR001911Ribosomal protein S21TIGRFAMsTIGR00030S21p: ribosomal protein S21coord: 90..147
score: 6.8
NoneNo IPR availableSEGsegsegcoord: 3..46
score: NAcoord: 62..70
score: NAcoord: 72..86
score: NAcoord: 89..106
score: NAcoord: 150..163
score
NoneNo IPR availableSEGsegsegcoord: 3..33
score: NAcoord: 34..42
score: NAcoord: 55..70
score: NAcoord: 89..100
score
NoneNo IPR availableSEGsegsegcoord: 18..26
score: NAcoord: 42..85
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>CD860389 ID=CD860389; Name=CD860389; organism=Pisum sativum; type=EST; length=489bp
GGCTATCTCAACCTCCTTCTCCAACTTCTTCTCTTTCCTCTCCCCACAAA
CAAAGCCACAACCACCGCCTCAACTCCCTCTTCTCTCTCAATTCCCATCT
CACCACAACAACCACCGCAACAACAGGATAATCCCCCTGTTCTCAGCCGC
AATGAAACAGCCTCTTCTTCAATTACATCTTCACCACCGCCACCGCCACC
GCCACCGCCACAAGACATGTCTTCCGATTTCACCTCATCCTCCATGTTCT
CAACATCCCACTACAATGTTGAAGTTGTTCTTGAAGATGATGAGCCTGAA
GAGAGATTGCTTAATCGGTTCCGTAGAGAGGTTATGAGCGCTGGTATTAT
TCAAGAGTCTAAGAGAAGGAAGTTTTTTGAGAATACACAGGATGAGAGGA
AACGTAGGATTCGTGATACTGCTAAGCGTAATCGTAGGCTCAAGTTTCCC
AGGCGTCCTATGGAAGGGAGACCTCCGGGAGGAGGACGG
back to top
Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular anatomical structure
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR001911Ribosomal_bS21