GH720493
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GH720493 vs. SwissProt
Match: RL8_SOLLC (60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 1.334e-7 Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = -3 Query: 182 TVRRDAPPGQKVGLIAAKRTGRLRGQXXXXXXXADK 289 TVRRDAPPGQKVGLIAA+RTGRLRGQ ADK Sbjct: 224 TVRRDAPPGQKVGLIAARRTGRLRGQARATAAKADK 259
BLAST of GH720493 vs. SwissProt
Match: RL81_ARATH (60S ribosomal protein L8-1 OS=Arabidopsis thaliana GN=RPL8A PE=2 SV=2) HSP 1 Score: 53.9138 bits (128), Expect = 2.972e-7 Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = -3 Query: 212 TVRRDAPPGQKVGLIAAKRTGRLRGQ 289 TVRRDAPPGQKVGLIAA+RTGRLRGQ Sbjct: 224 TVRRDAPPGQKVGLIAARRTGRLRGQ 249
BLAST of GH720493 vs. SwissProt
Match: RL83_ARATH (60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=2 SV=2) HSP 1 Score: 52.373 bits (124), Expect = 8.646e-7 Identity = 24/26 (92.31%), Postives = 26/26 (100.00%), Query Frame = -3 Query: 212 TVRRDAPPGQKVGLIAAKRTGRLRGQ 289 TVRRDAPPG+KVGLIAA+RTGRLRGQ Sbjct: 224 TVRRDAPPGKKVGLIAARRTGRLRGQ 249
BLAST of GH720493 vs. TAIR peptide
Match: AT2G18020.1 (| Symbols: EMB2296 | Ribosomal protein L2 family | chr2:7837151-7838160 FORWARD LENGTH=258) HSP 1 Score: 53.9138 bits (128), Expect = 2.344e-8 Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = -3 Query: 212 TVRRDAPPGQKVGLIAAKRTGRLRGQ 289 TVRRDAPPGQKVGLIAA+RTGRLRGQ Sbjct: 224 TVRRDAPPGQKVGLIAARRTGRLRGQ 249
BLAST of GH720493 vs. TAIR peptide
Match: AT4G36130.1 (| Symbols: | Ribosomal protein L2 family | chr4:17097613-17098656 FORWARD LENGTH=258) HSP 1 Score: 52.373 bits (124), Expect = 6.821e-8 Identity = 24/26 (92.31%), Postives = 26/26 (100.00%), Query Frame = -3 Query: 212 TVRRDAPPGQKVGLIAAKRTGRLRGQ 289 TVRRDAPPG+KVGLIAA+RTGRLRGQ Sbjct: 224 TVRRDAPPGKKVGLIAARRTGRLRGQ 249
BLAST of GH720493 vs. TAIR peptide
Match: AT2G18020.1 (| Symbols: EMB2296 | Ribosomal protein L2 family | chr2:7837151-7838160 FORWARD LENGTH=258) HSP 1 Score: 53.9138 bits (128), Expect = 2.344e-8 Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = -3 Query: 212 TVRRDAPPGQKVGLIAAKRTGRLRGQ 289 TVRRDAPPGQKVGLIAA+RTGRLRGQ Sbjct: 224 TVRRDAPPGQKVGLIAARRTGRLRGQ 249
BLAST of GH720493 vs. TAIR peptide
Match: AT4G36130.1 (| Symbols: | Ribosomal protein L2 family | chr4:17097613-17098656 FORWARD LENGTH=258) HSP 1 Score: 52.373 bits (124), Expect = 6.821e-8 Identity = 24/26 (92.31%), Postives = 26/26 (100.00%), Query Frame = -3 Query: 212 TVRRDAPPGQKVGLIAAKRTGRLRGQ 289 TVRRDAPPG+KVGLIAA+RTGRLRGQ Sbjct: 224 TVRRDAPPGKKVGLIAARRTGRLRGQ 249
BLAST of GH720493 vs. Lotus protein
Match: LjT43K17.90.r2.a (- phase: 0 ) HSP 1 Score: 56.225 bits (134), Expect = 3.230e-9 Identity = 29/36 (80.56%), Postives = 29/36 (80.56%), Query Frame = -3 Query: 182 TVRRDAPPGQKVGLIAAKRTGRLRGQXXXXXXXADK 289 TVRRDAPPGQKVGLIAAKRTGRLRGQ ADK Sbjct: 224 TVRRDAPPGQKVGLIAAKRTGRLRGQAAATAAKADK 259
BLAST of GH720493 vs. Lotus protein
Match: chr1.CM0284.670.r2.d (+ phase: 0 ) HSP 1 Score: 56.225 bits (134), Expect = 3.230e-9 Identity = 29/36 (80.56%), Postives = 29/36 (80.56%), Query Frame = -3 Query: 182 TVRRDAPPGQKVGLIAAKRTGRLRGQXXXXXXXADK 289 TVRRDAPPGQKVGLIAAKRTGRLRGQ ADK Sbjct: 224 TVRRDAPPGQKVGLIAAKRTGRLRGQAAATAAKADK 259
BLAST of GH720493 vs. Lotus protein
Match: chr2.CM0249.280.r2.d (+ phase: 2 /partial) HSP 1 Score: 56.225 bits (134), Expect = 3.230e-9 Identity = 29/36 (80.56%), Postives = 29/36 (80.56%), Query Frame = -3 Query: 182 TVRRDAPPGQKVGLIAAKRTGRLRGQXXXXXXXADK 289 TVRRDAPPGQKVGLIAAKRTGRLRGQ ADK Sbjct: 122 TVRRDAPPGQKVGLIAAKRTGRLRGQAAATAAKADK 157
BLAST of GH720493 vs. Lotus protein
Match: chr4.CM0119.50.r2.d (- phase: 0 ) HSP 1 Score: 56.225 bits (134), Expect = 3.230e-9 Identity = 29/36 (80.56%), Postives = 29/36 (80.56%), Query Frame = -3 Query: 182 TVRRDAPPGQKVGLIAAKRTGRLRGQXXXXXXXADK 289 TVRRDAPPGQKVGLIAAKRTGRLRGQ ADK Sbjct: 224 TVRRDAPPGQKVGLIAAKRTGRLRGQAAATAAKADK 259
BLAST of GH720493 vs. Soybean peptides
Match: Glyma16g24120.1|PACid:16302717 () HSP 1 Score: 55.0694 bits (131), Expect = 1.648e-8 Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = -3 Query: 182 TVRRDAPPGQKVGLIAAKRTGRLRGQXXXXXXXADK 289 TVRRDAPPGQKVGLIAA+RTGRLRGQ ADK Sbjct: 224 TVRRDAPPGQKVGLIAARRTGRLRGQAAATAAKADK 259
BLAST of GH720493 vs. Soybean peptides
Match: Glyma11g08050.1|PACid:16283084 () HSP 1 Score: 55.0694 bits (131), Expect = 1.648e-8 Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = -3 Query: 182 TVRRDAPPGQKVGLIAAKRTGRLRGQXXXXXXXADK 289 TVRRDAPPGQKVGLIAA+RTGRLRGQ ADK Sbjct: 224 TVRRDAPPGQKVGLIAARRTGRLRGQAAATAAKADK 259
BLAST of GH720493 vs. Soybean peptides
Match: Glyma02g05540.1|PACid:16247083 () HSP 1 Score: 55.0694 bits (131), Expect = 1.648e-8 Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = -3 Query: 182 TVRRDAPPGQKVGLIAAKRTGRLRGQXXXXXXXADK 289 TVRRDAPPGQKVGLIAA+RTGRLRGQ ADK Sbjct: 224 TVRRDAPPGQKVGLIAARRTGRLRGQAAATAAKADK 259
BLAST of GH720493 vs. Soybean peptides
Match: Glyma01g37250.1|PACid:16245458 () HSP 1 Score: 55.0694 bits (131), Expect = 1.648e-8 Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = -3 Query: 182 TVRRDAPPGQKVGLIAAKRTGRLRGQXXXXXXXADK 289 TVRRDAPPGQKVGLIAA+RTGRLRGQ ADK Sbjct: 224 TVRRDAPPGQKVGLIAARRTGRLRGQAAATAAKADK 259
BLAST of GH720493 vs. SwissProt
Match: RL8_SOLLC (60S ribosomal protein L8 OS=Solanum lycopersicum GN=RPL8 PE=2 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 1.357e-7 Identity = 28/36 (77.78%), Postives = 29/36 (80.56%), Query Frame = -3 Query: 182 TVRRDAPPGQKVGLIAAKRTGRLRGQXXXXXXXADK 289 TVRRDAPPGQKVGLIAA+RTGRLRGQ ADK Sbjct: 224 TVRRDAPPGQKVGLIAARRTGRLRGQARATAAKADK 259
BLAST of GH720493 vs. SwissProt
Match: RL81_ARATH (60S ribosomal protein L8-1 OS=Arabidopsis thaliana GN=RPL8A PE=1 SV=2) HSP 1 Score: 53.9138 bits (128), Expect = 3.024e-7 Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = -3 Query: 212 TVRRDAPPGQKVGLIAAKRTGRLRGQ 289 TVRRDAPPGQKVGLIAA+RTGRLRGQ Sbjct: 224 TVRRDAPPGQKVGLIAARRTGRLRGQ 249
BLAST of GH720493 vs. SwissProt
Match: RL83_ARATH (60S ribosomal protein L8-3 OS=Arabidopsis thaliana GN=RPL8C PE=1 SV=2) HSP 1 Score: 52.373 bits (124), Expect = 8.799e-7 Identity = 24/26 (92.31%), Postives = 26/26 (100.00%), Query Frame = -3 Query: 212 TVRRDAPPGQKVGLIAAKRTGRLRGQ 289 TVRRDAPPG+KVGLIAA+RTGRLRGQ Sbjct: 224 TVRRDAPPGKKVGLIAARRTGRLRGQ 249
BLAST of GH720493 vs. Medicago proteins
Match: IMGA|Medtr7g076940.1 (60S ribosomal protein L2 (AHRD V1 ***- B6TGT0_MAIZE); contains Interpro domain(s) IPR002171 Ribosomal protein L2 chr07_pseudomolecule_IMGAG_V3.5 21247962-21249644 F EGN_Mt100125 20100825) HSP 1 Score: 56.225 bits (134), Expect = 4.525e-9 Identity = 29/36 (80.56%), Postives = 29/36 (80.56%), Query Frame = -3 Query: 182 TVRRDAPPGQKVGLIAAKRTGRLRGQXXXXXXXADK 289 TVRRDAPPGQKVGLIAAKRTGRLRGQ ADK Sbjct: 224 TVRRDAPPGQKVGLIAAKRTGRLRGQAAASAAKADK 259
BLAST of GH720493 vs. Medicago proteins
Match: IMGA|Medtr5g021800.1 (60S ribosomal protein L2 (AHRD V1 ***- B6TGT0_MAIZE); contains Interpro domain(s) IPR002171 Ribosomal protein L2 chr05_pseudomolecule_IMGAG_V3.5 8236299-8234206 F EGN_Mt100125 20100825) HSP 1 Score: 55.0694 bits (131), Expect = 1.008e-8 Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = -3 Query: 212 TVRRDAPPGQKVGLIAAKRTGRLRGQ 289 TVRRDAPPGQKVGLIAAKRTGRLRGQ Sbjct: 224 TVRRDAPPGQKVGLIAAKRTGRLRGQ 249 The following BLAST results are available for this feature:
BLAST of GH720493 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot) Total hits: 3
BLAST of GH720493 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide) Total hits: 2
BLAST of GH720493 vs. TAIR peptide
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs TAIR 10 peptide) Total hits: 2
BLAST of GH720493 vs. Lotus protein
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Lotus proteins) Total hits: 4
BLAST of GH720493 vs. Soybean peptides
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Soybean peptides) Total hits: 4
BLAST of GH720493 vs. SwissProt
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Swissprot) Total hits: 3
BLAST of GH720493 vs. Medicago proteins
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Medicago proteins) Total hits: 2
InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v2
Date Performed: 2011-04-27
Analysis Name: InterProScan analysis for Pisum sativum unigene v1 Date Performed: 2010-12-29
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GH720493 ID=GH720493; Name=GH720493; organism=Pisum sativum; type=EST; length=309bpback to top |