CD861308

EST Overview


Name	CD861308
Unique Name	CD861308
Type	EST
Organism	Pisum sativum (pea)
Sequence length	474

Libraries


Library Name	Type
LIBEST_014005 WP	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Homology

[Close]

BLAST of CD861308 vs. TrEMBL
Match: D7LT02_ARALY (LOB domain protein 38 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_906311 PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.701e-14
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 1

Query:  325 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGLCHSLRSQVFGRADLMS 474
            MSCNGCRVLRKGCSE+CILRPCIQWI++PE+QG      ++ FGRA LMS
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMS 50

[Close]

BLAST of CD861308 vs. TrEMBL
Match: Q0PN09_9FABA (Lateral organ boundaries domain protein OS=Caragana korshinskii PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.608e-14
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1

Query:  325 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGLCHSLRSQVFGRADLMS 474
            MSCNGCRVLRKGCSESCILRPC+QW++ PE+QG      ++ FGRA LMS
Sbjct:    1 MSCNGCRVLRKGCSESCILRPCLQWLENPEAQGHATVFVAKFFGRAGLMS 50

[Close]

BLAST of CD861308 vs. TrEMBL
Match: B9SGY6_RICCO (LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_0578520 PE=4 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.608e-14
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 1

Query:  325 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGLCHSLRSQVFGRADLMS 474
            MSCNGCRVLRKGCSE+CILRPC+QWI++PE+QG      ++ FGRA LMS
Sbjct:    1 MSCNGCRVLRKGCSETCILRPCLQWIESPEAQGHATVFVAKFFGRAGLMS 50

[Close]

BLAST of CD861308 vs. TrEMBL
Match: B9H6M3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_831441 PE=4 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.608e-14
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 1

Query:  325 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGLCHSLRSQVFGRADLMS 474
            MSCNGCRVLRKGCSE+CILRPC+QWI++PE+QG      ++ FGRA LMS
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCLQWIESPEAQGHATVFVAKFFGRAGLMS 50

[Close]

BLAST of CD861308 vs. TrEMBL
Match: B9GYX6_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_646183 PE=4 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.608e-14
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 1

Query:  325 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGLCHSLRSQVFGRADLMS 474
            MSCNGCRVLRKGCSE+CILRPC+QWI++PE+QG      ++ FGRA LMS
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCLQWIESPEAQGHATVFVAKFFGRAGLMS 50

[Close]

BLAST of CD861308 vs. TrEMBL
Match: A9PK79_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.608e-14
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 1

Query:  325 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGLCHSLRSQVFGRADLMS 474
            MSCNGCRVLRKGCSE+CILRPC+QWI++PE+QG      ++ FGRA LMS
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCLQWIESPEAQGHATVFVAKFFGRAGLMS 50

[Close]

BLAST of CD861308 vs. TrEMBL
Match: D7TT88_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_129.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00000141001 PE=4 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.860e-14
Identity = 36/50 (72.00%), Postives = 41/50 (82.00%), Query Frame = 1

Query:  325 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGLCHSLRSQVFGRADLMS 474
            MSCNGCRVLRKGCSESCILRPC+QWI++ ESQG      ++ FGRA LMS
Sbjct:    1 MSCNGCRVLRKGCSESCILRPCLQWIESAESQGHATVFVAKFFGRAGLMS 50

[Close]

BLAST of CD861308 vs. TrEMBL
Match: A9T578_PHYPA (Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_48199 PE=4 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.341e-13
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1

Query:  325 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGLCHSLRSQVFGRADLMS 474
            MSCNGCRVLRKGCSESCILRPC+QWID+ ++QG      ++ FGRA LMS
Sbjct:    1 MSCNGCRVLRKGCSESCILRPCLQWIDSADAQGHATVFVAKFFGRAGLMS 50

[Close]

BLAST of CD861308 vs. TrEMBL
Match: D7MUQ7_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_496854 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.751e-13
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1

Query:  325 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGLCHSLRSQVFGRADLMS 474
            MSCNGCRVLRKGCSE+CILRPCIQWI+T ++QG      ++ FGRA LMS
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMS 50

[Close]

BLAST of CD861308 vs. TrEMBL
Match: D7MAL2_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_490864 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.751e-13
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1

Query:  325 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGLCHSLRSQVFGRADLMS 474
            MSCNGCRVLRKGCSE+CILRPC+QWI++ ESQG      ++ FGRA LMS
Sbjct:    1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATIFVAKFFGRAGLMS 50

[Close]

BLAST of CD861308 vs. SwissProt
Match: LBD38_ARATH (LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.910e-15
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 1

Query:  325 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGLCHSLRSQVFGRADLMS 474
            MSCNGCRVLRKGCSE+CILRPCIQWI++PE+QG      ++ FGRA LMS
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMS 50

[Close]

BLAST of CD861308 vs. SwissProt
Match: LBD39_ARATH (LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.238e-14
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1

Query:  325 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGLCHSLRSQVFGRADLMS 474
            MSCNGCRVLRKGCSE+CILRPC+QWI++ ESQG      ++ FGRA LMS
Sbjct:    1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMS 50

[Close]

BLAST of CD861308 vs. SwissProt
Match: LBD37_ARATH (LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.238e-14
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1

Query:  325 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGLCHSLRSQVFGRADLMS 474
            MSCNGCRVLRKGCSE+CILRPCIQWI+T ++QG      ++ FGRA LMS
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMS 50

[Close]

BLAST of CD861308 vs. SwissProt
Match: LBD40_ARATH (LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.403e-12
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  325 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGLCHSLRSQVFGRADLMS 474
            MSCNGCRVLRKGCSE+C +RPC+QWI + ESQ       ++ +GRA LM+
Sbjct:    3 MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMN 52

[Close]

BLAST of CD861308 vs. SwissProt
Match: LBD41_ARATH (LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.510e-12
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1

Query:  325 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGLCHSLRSQVFGRADLMS 474
            MSCNGCRVLRKGCSE C +RPC+ WI +PE+Q       ++ +GRA LM+
Sbjct:    3 MSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMN 52

[Close]

BLAST of CD861308 vs. SwissProt
Match: LBD42_ARATH (LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 3.155e-10
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 1

Query:  325 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGLCHSLRSQVFGRADLMS 474
            +SCNGCRVLRKGC++ C +RPC+QWI + +SQ       ++ +GRA L++
Sbjct:    3 ISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLN 52

[Close]

BLAST of CD861308 vs. TAIR peptide
Match: AT3G49940.1 (| Symbols: LBD38 | LOB domain-containing protein 38 | chr3:18514465-18515302 FORWARD LENGTH=247)

HSP 1 Score: 81.6481 bits (200), Expect = 2.173e-16
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 1

Query:  325 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGLCHSLRSQVFGRADLMS 474
            MSCNGCRVLRKGCSE+CILRPCIQWI++PE+QG      ++ FGRA LMS
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMS 50

[Close]

BLAST of CD861308 vs. TAIR peptide
Match: AT5G67420.1 (| Symbols: LBD37, ASL39 | LOB domain-containing protein 37 | chr5:26904576-26905415 REVERSE LENGTH=250)

HSP 1 Score: 78.9518 bits (193), Expect = 1.408e-15
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1

Query:  325 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGLCHSLRSQVFGRADLMS 474
            MSCNGCRVLRKGCSE+CILRPCIQWI+T ++QG      ++ FGRA LMS
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMS 50

[Close]

BLAST of CD861308 vs. TAIR peptide
Match: AT4G37540.1 (| Symbols: LBD39 | LOB domain-containing protein 39 | chr4:17639649-17640509 REVERSE LENGTH=240)

HSP 1 Score: 78.9518 bits (193), Expect = 1.408e-15
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1

Query:  325 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGLCHSLRSQVFGRADLMS 474
            MSCNGCRVLRKGCSE+CILRPC+QWI++ ESQG      ++ FGRA LMS
Sbjct:    1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMS 50

[Close]

BLAST of CD861308 vs. TAIR peptide
Match: AT1G67100.1 (| Symbols: LBD40 | LOB domain-containing protein 40 | chr1:25053801-25054659 FORWARD LENGTH=233)

HSP 1 Score: 70.4774 bits (171), Expect = 5.009e-13
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 1

Query:  325 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGLCHSLRSQVFGRADLMS 474
            MSCNGCRVLRKGCSE+C +RPC+QWI + ESQ       ++ +GRA LM+
Sbjct:    3 MSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMN 52

[Close]

BLAST of CD861308 vs. TAIR peptide
Match: AT3G02550.1 (| Symbols: LBD41 | LOB domain-containing protein 41 | chr3:536747-537650 REVERSE LENGTH=263)

HSP 1 Score: 69.707 bits (169), Expect = 8.545e-13
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1

Query:  325 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGLCHSLRSQVFGRADLMS 474
            MSCNGCRVLRKGCSE C +RPC+ WI +PE+Q       ++ +GRA LM+
Sbjct:    3 MSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMN 52

[Close]

BLAST of CD861308 vs. TAIR peptide
Match: AT1G68510.1 (| Symbols: LBD42 | LOB domain-containing protein 42 | chr1:25707033-25708004 FORWARD LENGTH=233)

HSP 1 Score: 64.3142 bits (155), Expect = 3.590e-11
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 1

Query:  325 MSCNGCRVLRKGCSESCILRPCIQWIDTPESQGLCHSLRSQVFGRADLMS 474
            +SCNGCRVLRKGC++ C +RPC+QWI + +SQ       ++ +GRA L++
Sbjct:    3 ISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLN 52

The following BLAST results are available for this feature:

BLAST of CD861308 vs. TrEMBL
BLAST of CD861308 vs. SwissProt
BLAST of CD861308 vs. TAIR peptide

BLAST of CD861308 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
D7LT02_ARALY	2.701e-14	72.00	LOB domain protein 38 OS=Arabidopsis lyrata subsp....	[more]
Q0PN09_9FABA	4.608e-14	70.00	Lateral organ boundaries domain protein OS=Caragan...	[more]
B9SGY6_RICCO	4.608e-14	70.00	LOB domain-containing protein, putative OS=Ricinus...	[more]
B9H6M3_POPTR	4.608e-14	70.00	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9GYX6_POPTR	4.608e-14	70.00	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
A9PK79_9ROSI	4.608e-14	70.00	Putative uncharacterized protein OS=Populus tricho...	[more]
D7TT88_VITVI	7.860e-14	72.00	Whole genome shotgun sequence of line PN40024, sca...	[more]
A9T578_PHYPA	1.341e-13	70.00	Predicted protein (Fragment) OS=Physcomitrella pat...	[more]
D7MUQ7_ARALY	1.751e-13	70.00	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
D7MAL2_ARALY	1.751e-13	70.00	Putative uncharacterized protein OS=Arabidopsis ly...	[more]

BLAST of CD861308 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 6


Match Name	E-value	Identity	Description
LBD38_ARATH	1.910e-15	72.00	LOB domain-containing protein 38 OS=Arabidopsis th...	[more]
LBD39_ARATH	1.238e-14	70.00	LOB domain-containing protein 39 OS=Arabidopsis th...	[more]
LBD37_ARATH	1.238e-14	70.00	LOB domain-containing protein 37 OS=Arabidopsis th...	[more]
LBD40_ARATH	4.403e-12	60.00	LOB domain-containing protein 40 OS=Arabidopsis th...	[more]
LBD41_ARATH	7.510e-12	58.00	LOB domain-containing protein 41 OS=Arabidopsis th...	[more]
LBD42_ARATH	3.155e-10	50.00	LOB domain-containing protein 42 OS=Arabidopsis th...	[more]

BLAST of CD861308 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 6


Match Name	E-value	Identity	Description
AT3G49940.1	2.173e-16	72.00	\| Symbols: LBD38 \| LOB domain-containing protein 3...	[more]
AT5G67420.1	1.408e-15	70.00	\| Symbols: LBD37, ASL39 \| LOB domain-containing pr...	[more]
AT4G37540.1	1.408e-15	70.00	\| Symbols: LBD39 \| LOB domain-containing protein 3...	[more]
AT1G67100.1	5.009e-13	60.00	\| Symbols: LBD40 \| LOB domain-containing protein 4...	[more]
AT3G02550.1	8.545e-13	58.00	\| Symbols: LBD41 \| LOB domain-containing protein 4...	[more]
AT1G68510.1	3.590e-11	50.00	\| Symbols: LBD42 \| LOB domain-containing protein 4...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 6..53 score: 9.3
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 5..54 score: 10

Properties


Property Name	Value
Singlet in analysis	Pisum sativum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CD861308 ID=CD861308; Name=CD861308; organism=Pisum sativum; type=EST; length=474bp
GTTCACGACGGAGACCGGAAAGTTCTTAACCTTTTTGTTTGAGGGATATT
TCTTCTTTATGAGATTCGTGTTTTTTGTTTCTGGATCGTGCGATTAAGGG
CTTGTGAGCACGTTATTTTTGTCTTTTTTTAGTGATTTCTTTTACCGGAA
AATAATTCCGGTGAGATTTTGTAAAACGCCGGCACATGATTTTTCTCTGT
TCTTTTATTAACAGGGAGAAAGATGAAGGTTAGTCGGTGAGGATTTTTTT
TTATAAAAAAAATCTGTCAAACATGTTGCTATGAAGGTGTGACATGAATA
TTAAATAATTAAATCAAAAAAAACATGAGTTGCAACGGTTGCCGTGTCCT
TAGAAAGGGTTGTAGTGAGTCTTGTATCTTACGCCCTTGTATTCAATGGA
TCGATACCCCTGAATCACAAGGGCTATGCCACTCTCTTCGTAGCCAAGTT
TTCGGTCGTGCTGACCTTATGTCT

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

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