AJ308192

EST Overview


Name	AJ308192
Unique Name	AJ308192
Type	EST
Organism	Pisum sativum (pea)
Sequence length	457

Libraries


Library Name	Type
LIBEST_009888 SSH	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v2	Pisum sativum unigene v2	EST
Pisum sativum unigene v1	Pisum sativum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Pisum sativum unigene v2	2011-03-01
Homology Analysis: Pisum sativum unigene v2 vs Trembl	2011-04-27
Homology Analysis: Pisum sativum unigene v2 vs Lotus proteins	2011-04-21
Homology Analysis: Pisum sativum unigene v2 vs Soybean peptides	2011-04-21
InterProScan analysis for Pisum sativum unigene v2	2011-04-27
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Homology

[Close]

BLAST of AJ308192 vs. TrEMBL
Match: D7TH68_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00033953001 PE=4 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.445e-7
Identity = 26/58 (44.83%), Postives = 40/58 (68.97%), Query Frame = 2

Query:    2 LVLMHKDAKLQQIMSKFKEDTDNIIHEISLLKSYEQISRKIEASHKIQCALDRLNILT 175
            L+LMHKD K+Q+I+S  K + D+I+  + LL++ + ++  IE  H IQCA DRL  +T
Sbjct:  634 LILMHKDVKIQRILSSCKSEIDHILQNMLLLQASKGMNMSIEERHNIQCAFDRLKCIT 691

[Close]

BLAST of AJ308192 vs. TrEMBL
Match: D7TH68_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00033953001 PE=4 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 3.057e-7
Identity = 26/58 (44.83%), Postives = 40/58 (68.97%), Query Frame = 2

Query:    2 LVLMHKDAKLQQIMSKFKEDTDNIIHEISLLKSYEQISRKIEASHKIQCALDRLNILT 175
            L+LMHKD K+Q+I+S  K + D+I+  + LL++ + ++  IE  H IQCA DRL  +T
Sbjct:  634 LILMHKDVKIQRILSSCKSEIDHILQNMLLLQASKGMNMSIEERHNIQCAFDRLKCIT 691

[Close]

BLAST of AJ308192 vs. Lotus protein
Match: chr1.CM0029.320.r2.d (- phase: 1 /pseudo/partial)

HSP 1 Score: 60.8474 bits (146), Expect = 2.208e-10
Identity = 39/88 (44.32%), Postives = 47/88 (53.41%), Query Frame = 2

Query:    2 LVLMHKDAKLQQIMSKFKEDTDNIIHEISLLK------SY-----------------------EQISRKIEASHKIQCALDRLNILTR 178
            LVLMHKD KL+QIMS+FKED DNII ++  L+      SY                        + S KIE  H+IQCA +RL ILTR
Sbjct:  130 LVLMHKDVKLRQIMSEFKEDIDNIIQKVHSLQVT*TLMSYY*LLFEACCS*LLLICKSSFPWSSEKSMKIEERHEIQCAFERLKILTR 217

[Close]

BLAST of AJ308192 vs. Soybean peptides
Match: Glyma16g19250.1|PACid:16302367 ()

HSP 1 Score: 74.7146 bits (182), Expect = 3.631e-14
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 2

Query:    2 LVLMHKDAKLQQIMSKFKEDTDNIIHEISLLKSYEQISRKIEASHKIQCALDRLNILT 175
            L LMHKDAKLQ IMS FKED DN+IH++  LK+  +IS  IE  H+IQCA +RL ILT
Sbjct:  796 LFLMHKDAKLQPIMSLFKEDIDNVIHKVFSLKTSGRISTTIEERHEIQCAFERLKILT 853

[Close]

BLAST of AJ308192 vs. Soybean peptides
Match: Glyma07g18180.1|PACid:16267668 ()

HSP 1 Score: 73.1738 bits (178), Expect = 1.057e-13
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 2

Query:    2 LVLMHKDAKLQQIMSKFKEDTDNIIHEISLLKSYEQISRKIEASHKIQCALDRLNILT 175
            L LMHKDAKLQ IMS FKED DN+IH++  LK+  +IS  IE  H+IQCA ++L ILT
Sbjct:  777 LFLMHKDAKLQPIMSLFKEDIDNVIHKVFSLKTSGRISTTIEERHEIQCAFEQLKILT 834

The following BLAST results are available for this feature:

BLAST of AJ308192 vs. TrEMBL
BLAST of AJ308192 vs. TrEMBL
BLAST of AJ308192 vs. Lotus protein
BLAST of AJ308192 vs. Soybean peptides

BLAST of AJ308192 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 1


Match Name	E-value	Identity	Description
D7TH68_VITVI	2.445e-7	44.83	Whole genome shotgun sequence of line PN40024, sca...	[more]

BLAST of AJ308192 vs. TrEMBL
Analysis Date: 2011-04-27 (Homology Analysis: Pisum sativum unigene v2 vs Trembl)
Total hits: 1


Match Name	E-value	Identity	Description
D7TH68_VITVI	3.057e-7	44.83	Whole genome shotgun sequence of line PN40024, sca...	[more]

BLAST of AJ308192 vs. Lotus protein
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Lotus proteins)
Total hits: 1


Match Name	E-value	Identity	Description
chr1.CM0029.320.r2.d	2.208e-10	44.32	- phase: 1 /pseudo/partial	[more]

BLAST of AJ308192 vs. Soybean peptides
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Soybean peptides)
Total hits: 2


Match Name	E-value	Identity	Description
Glyma16g19250.1\|PACid:16302367	3.631e-14	63.79		[more]
Glyma07g18180.1\|PACid:16267668	1.057e-13	62.07		[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v2
Date Performed: 2011-04-27


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 8..18 score

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 8..18 score

Properties


Property Name	Value
Singlet in analysis	Pisum sativum unigene v2
Singlet in analysis	Pisum sativum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>AJ308192 ID=AJ308192; Name=AJ308192; organism=Pisum sativum; type=EST; length=457bp
ACTAGTGTTGATGCACAAGGATGCAAAATTGCAACAAATTATGTCTAAAT
TCAAGGAGGATACTGATAACATCATACACGAAATTAGTTTGTTAAAGTCT
TACGAGCAAATTAGTCGGAAAATTGAAGCAAGTCATAAAATACAATGTGC
ATTAGATCGACTGAATATTTTAACAAGATAACAATGCTCAAGAAAGGTGT
TTTTGAGTGAGAAACTTGTTCACGCTATATGGCGGAACCCAAGAACTTTT
TAAAGAAAATCTCAGTGGATGTAACTGTAAACTTTCTACCTTCTTTTTCC
AAGTTTATTCTGCAAGCAATTTTGAGGTATGCTAGCAAGCAGTTTTGAGG
TATAATTTTTGCTCCAATTGTTAGGGGCTATGTGTAGTTCCAACCGATAG
TCTCTTGTGACTCTTGTAACAGTCCGTGGCCGGGTAGCTGGTTTGCTTGC
AGAAAGT

Search form