CD858934

EST Overview
NameCD858934
Unique NameCD858934
TypeEST
OrganismPisum sativum (pea)
Sequence length211
Libraries
Library NameType
LIBEST_013997 CIcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Pisum sativum unigene v12010-12-29
Homology
BLAST of CD858934 vs. TrEMBL
Match: C6SZV9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.187e-14
Identity = 38/44 (86.36%), Postives = 41/44 (93.18%), Query Frame = 3
Query:   36 VRAKDGSAFAKCDECKKNVPVALISMHDCSLEAKIKMNLDSHVV 167
            VRAKDGSAFA+CD+CKKNVPVALI MH CSLEAKIKMNLD+ VV
Sbjct:   22 VRAKDGSAFARCDDCKKNVPVALIDMHSCSLEAKIKMNLDAQVV 65          

HSP 2 Score: 20.7866 bits (42), Expect = 1.187e-14
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 1
Query:    1 KRVDAVDSASA 33
            KRVDAVDS +A
Sbjct:    8 KRVDAVDSRAA 18          
BLAST of CD858934 vs. TrEMBL
Match: B9RGI3_RICCO (DNA-binding protein MNB1B, putative OS=Ricinus communis GN=RCOM_1454160 PE=4 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.273e-13
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 3
Query:   36 VRAKDGSAFAKCDECKKNVPVALISMHDCSLEAKIKMNLDSHVV 167
            VR KDGSAFA+CDECKK+VPVALISMH CSLEA+IKMNL++ +V
Sbjct:   19 VRGKDGSAFARCDECKKDVPVALISMHSCSLEARIKMNLEAQIV 62          
BLAST of CD858934 vs. TrEMBL
Match: A9PB77_POPTR (High mobility group family OS=Populus trichocarpa GN=HMGB907 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.636e-13
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 3
Query:   36 VRAKDGSAFAKCDECKKNVPVALISMHDCSLEAKIKMNLDSHVV 167
            VRAKDGSAF KC+ECKK+VPVALIS H CSL+AKIKMNL++ VV
Sbjct:   24 VRAKDGSAFTKCEECKKDVPVALISFHSCSLDAKIKMNLEAQVV 67          
BLAST of CD858934 vs. TrEMBL
Match: A5BH75_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034306 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.628e-11
Identity = 31/43 (72.09%), Postives = 38/43 (88.37%), Query Frame = 3
Query:   39 RAKDGSAFAKCDECKKNVPVALISMHDCSLEAKIKMNLDSHVV 167
            RA+DGSAF +C+ECKK+VPV LI MH CSLEAKIK+NL++ VV
Sbjct:   19 RARDGSAFIRCEECKKDVPVVLIDMHSCSLEAKIKLNLEAQVV 61          
BLAST of CD858934 vs. TrEMBL
Match: Q8LDF9_ARATH (Putative uncharacterized protein OS=Arabidopsis thaliana GN=At5g23420/K19M13_4 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.524e-9
Identity = 30/43 (69.77%), Postives = 38/43 (88.37%), Query Frame = 3
Query:   39 RAKDGSAFAKCDECKKNVPVALISMHDCSLEAKIKMNLDSHVV 167
            RAKDGSAFA C+ C K+V VALISMH+CSL+AKI++NL++ VV
Sbjct:   31 RAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIRVNLEAQVV 73          
BLAST of CD858934 vs. TrEMBL
Match: D7M296_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_910356 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.524e-9
Identity = 30/43 (69.77%), Postives = 38/43 (88.37%), Query Frame = 3
Query:   39 RAKDGSAFAKCDECKKNVPVALISMHDCSLEAKIKMNLDSHVV 167
            RAKDGSAFA C+ C K+V VALISMH+CSL+AKI++NL++ VV
Sbjct:   31 RAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIRVNLEAQVV 73          
BLAST of CD858934 vs. TrEMBL
Match: B6T1S6_MAIZE (HMG1/2-like protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 4.904e-8
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 3
Query:   39 RAKDGSAFAKCDECKKNVPVALISMHDCSLEAKIKMNLDSHVV 167
            R++DGSAF +C+ C K+VPV LI MH CSL+ KI+M L++ VV
Sbjct:   24 RSRDGSAFTRCEACNKDVPVVLIDMHSCSLDEKIRMTLEAQVV 66          
BLAST of CD858934 vs. TrEMBL
Match: A9NTD7_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 8.365e-8
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 3
Query:   39 RAKDGSAFAKCDECKKNVPVALISMHDCSLEAKIKMNLDS 158
            RA+DGS F KCD C K++PVAL  MHDC LE KI+ N D+
Sbjct:   27 RARDGSGFTKCDVCNKHIPVALSDMHDCQLEDKIRSNFDA 66          
BLAST of CD858934 vs. TrEMBL
Match: C5YLC2_SORBI (Putative uncharacterized protein Sb07g000230 OS=Sorghum bicolor GN=Sb07g000230 PE=4 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 4.151e-7
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 3
Query:   39 RAKDGSAFAKCDECKKNVPVALISMHDCSLEAKIKMNLDSHVV 167
            R++DGSAF +C+ C K+VPV LI MH CSL+  I+M L++ VV
Sbjct:   24 RSRDGSAFTRCEACNKDVPVVLIDMHSCSLDKHIRMMLEAQVV 66          
BLAST of CD858934 vs. TrEMBL
Match: D7LYM2_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_488801 PE=4 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 5.422e-7
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 3
Query:   39 RAKDGSAFAKCDECKKNVPVALISMHDCSLEAKIK 143
            RAKDGSAFA C+ C K+V VALISMH+CSL+AKI+
Sbjct:   32 RAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIR 66          
BLAST of CD858934 vs. TAIR peptide
Match: AT5G23420.2 (| Symbols: HMGB6 | high-mobility group box 6 | chr5:7888657-7890111 REVERSE LENGTH=157)

HSP 1 Score: 65.855 bits (159), Expect = 6.076e-12
Identity = 30/43 (69.77%), Postives = 38/43 (88.37%), Query Frame = 3
Query:   39 RAKDGSAFAKCDECKKNVPVALISMHDCSLEAKIKMNLDSHVV 167
            RAKDGSAFA C+ C K+V VALISMH+CSL+AKI++NL++ VV
Sbjct:   31 RAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIRVNLEAQVV 73          
BLAST of CD858934 vs. TAIR peptide
Match: AT5G23420.1 (| Symbols: HMGB6 | high-mobility group box 6 | chr5:7888712-7890111 REVERSE LENGTH=241)

HSP 1 Score: 65.855 bits (159), Expect = 6.076e-12
Identity = 30/43 (69.77%), Postives = 38/43 (88.37%), Query Frame = 3
Query:   39 RAKDGSAFAKCDECKKNVPVALISMHDCSLEAKIKMNLDSHVV 167
            RAKDGSAFA C+ C K+V VALISMH+CSL+AKI++NL++ VV
Sbjct:   31 RAKDGSAFALCEGCNKSVAVALISMHNCSLDAKIRVNLEAQVV 73          
The following BLAST results are available for this feature:
BLAST of CD858934 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
C6SZV9_SOYBN1.187e-1486.36Putative uncharacterized protein OS=Glycine max PE... [more]
B9RGI3_RICCO2.273e-1379.55DNA-binding protein MNB1B, putative OS=Ricinus com... [more]
A9PB77_POPTR8.636e-1379.55High mobility group family OS=Populus trichocarpa ... [more]
A5BH75_VITVI3.628e-1172.09Putative uncharacterized protein OS=Vitis vinifera... [more]
Q8LDF9_ARATH1.524e-969.77Putative uncharacterized protein OS=Arabidopsis th... [more]
D7M296_ARALY1.524e-969.77Putative uncharacterized protein OS=Arabidopsis ly... [more]
B6T1S6_MAIZE4.904e-858.14HMG1/2-like protein OS=Zea mays PE=2 SV=1[more]
A9NTD7_PICSI8.365e-862.50Putative uncharacterized protein OS=Picea sitchens... [more]
C5YLC2_SORBI4.151e-755.81Putative uncharacterized protein Sb07g000230 OS=So... [more]
D7LYM2_ARALY5.422e-774.29Putative uncharacterized protein OS=Arabidopsis ly... [more]
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BLAST of CD858934 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G23420.26.076e-1269.77| Symbols: HMGB6 | high-mobility group box 6 | chr... [more]
AT5G23420.16.076e-1269.77| Symbols: HMGB6 | high-mobility group box 6 | chr... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 50..63
score
NoneNo IPR availableSEGsegsegcoord: 1..14
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>CD858934 ID=CD858934; Name=CD858934; organism=Pisum sativum; type=EST; length=211bp
AAAAGGGTTGACGCTGTTGATTCCGCTTCCGCTCTGTTCGTGCCAAAGAT
GGTAGCGCCTTCGCCAAATGTGACGAGTGTAAGAAGAATGTTCCTGTTGC
ACTCATTAGCATGCATGATTGTAGCCTTGAAGCCAAAATCAAAATGAATC
TTGATTCTCATGTTGTTGAGCAAGCTGCTGCTGAAGCGAAGAAACCTGAG
AGGAAGAAGCC
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