CD860155

EST Overview


Name	CD860155
Unique Name	CD860155
Type	EST
Organism	Pisum sativum (pea)
Sequence length	734

Libraries


Library Name	Type
LIBEST_014002 PW	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Homology

[Close]

BLAST of CD860155 vs. TrEMBL
Match: A5BVQ5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008353 PE=4 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.220e-23
Identity = 58/84 (69.05%), Postives = 64/84 (76.19%), Query Frame = -1

Query:  474 SFPNMTTLEVTQFVNGFFKSTTDLSTCETHIRDFLIQSKEFSAQDNKDLYXXXXXXXXXXXXXRMLSIPGLIAPSELQDEMVDS 725
            SFPNMTT EVTQFV G F+S  DLST + HIRDFL+QSKEFSAQDNKDLY             RMLSIPGLIAP+E+QDEM+DS
Sbjct:  993 SFPNMTTSEVTQFVTGLFESRNDLSTFKNHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMLDS 1076

[Close]

BLAST of CD860155 vs. TrEMBL
Match: B9S1Z9_RICCO (Chromosome region maintenance protein 1/exportin, putative OS=Ricinus communis GN=RCOM_1324510 PE=4 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.459e-23
Identity = 57/84 (67.86%), Postives = 63/84 (75.00%), Query Frame = -1

Query:  474 SFPNMTTLEVTQFVNGFFKSTTDLSTCETHIRDFLIQSKEFSAQDNKDLYXXXXXXXXXXXXXRMLSIPGLIAPSELQDEMVDS 725
            SFPNMT  EVTQFVNG F+S  DLS  + HIRDFL+QSKEFSAQDNKDLY             RMLSIPGLIAP+E+QDEM+DS
Sbjct:  986 SFPNMTASEVTQFVNGLFESRNDLSVFKNHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMLDS 1069

[Close]

BLAST of CD860155 vs. TrEMBL
Match: B9I8G4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_774005 PE=4 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.459e-23
Identity = 57/84 (67.86%), Postives = 63/84 (75.00%), Query Frame = -1

Query:  474 SFPNMTTLEVTQFVNGFFKSTTDLSTCETHIRDFLIQSKEFSAQDNKDLYXXXXXXXXXXXXXRMLSIPGLIAPSELQDEMVDS 725
            SFPNMT  EVTQFVNG F+S  DLS  + HIRDFL+QSKEFSAQDNKDLY             RMLSIPGLIAP+E+QDEM+DS
Sbjct:  993 SFPNMTASEVTQFVNGLFESRNDLSAFKNHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMLDS 1076

[Close]

BLAST of CD860155 vs. TrEMBL
Match: D1MAF2_SOLLC (Exportin-1 OS=Solanum lycopersicum GN=Xpo1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.439e-22
Identity = 57/84 (67.86%), Postives = 62/84 (73.81%), Query Frame = -1

Query:  474 SFPNMTTLEVTQFVNGFFKSTTDLSTCETHIRDFLIQSKEFSAQDNKDLYXXXXXXXXXXXXXRMLSIPGLIAPSELQDEMVDS 725
            SFPNMT  EVTQFV+G F ST DL T + HIRDFL+QSKEFSAQDNKDLY             RM SIPGLIAP+E+QDEMVDS
Sbjct:  992 SFPNMTAAEVTQFVSGLFDSTNDLPTFKNHIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMRSIPGLIAPNEIQDEMVDS 1075

[Close]

BLAST of CD860155 vs. TrEMBL
Match: B9IQ04_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_780400 PE=4 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.206e-22
Identity = 56/84 (66.67%), Postives = 63/84 (75.00%), Query Frame = -1

Query:  474 SFPNMTTLEVTQFVNGFFKSTTDLSTCETHIRDFLIQSKEFSAQDNKDLYXXXXXXXXXXXXXRMLSIPGLIAPSELQDEMVDS 725
            SFPNMT  EVTQFVNG F+S  +LS  + HIRDFL+QSKEFSAQDNKDLY             RMLSIPGLIAP+E+QDEM+DS
Sbjct:  993 SFPNMTASEVTQFVNGLFESKNNLSIFKNHIRDFLVQSKEFSAQDNKDLYAEEAAVQRERERQRMLSIPGLIAPNEIQDEMLDS 1076

[Close]

BLAST of CD860155 vs. TrEMBL
Match: Q9M9N0_ARATH (Putative exportin1 (XPO1) protein OS=Arabidopsis thaliana GN=T17B22.20 PE=4 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.591e-21
Identity = 55/85 (64.71%), Postives = 63/85 (74.12%), Query Frame = -1

Query:  474 ASFPNMTTLEVTQFVNGFFKSTTDLSTCETHIRDFLIQSKEFSAQDNKDLYXXXXXXXXXXXXXRMLSIPGLIAPSELQDEMVDS 728
            +SFPNMTT EVTQFVNG ++S  D+   + +IRDFLIQSKEFSAQDNKDLY             RMLSIPGLIAPSE+QD+M DS
Sbjct:  938 SSFPNMTTTEVTQFVNGLYESRNDVGRFKDNIRDFLIQSKEFSAQDNKDLYAEEAAAQMERERQRMLSIPGLIAPSEIQDDMADS 1022

[Close]

BLAST of CD860155 vs. TrEMBL
Match: Q94KD5_ARATH (AT3g03110/T17B22_20 OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.591e-21
Identity = 55/85 (64.71%), Postives = 63/85 (74.12%), Query Frame = -1

Query:  474 ASFPNMTTLEVTQFVNGFFKSTTDLSTCETHIRDFLIQSKEFSAQDNKDLYXXXXXXXXXXXXXRMLSIPGLIAPSELQDEMVDS 728
            +SFPNMTT EVTQFVNG ++S  D+   + +IRDFLIQSKEFSAQDNKDLY             RMLSIPGLIAPSE+QD+M DS
Sbjct:  272 SSFPNMTTTEVTQFVNGLYESRNDVGRFKDNIRDFLIQSKEFSAQDNKDLYAEEAAAQMERERQRMLSIPGLIAPSEIQDDMADS 356

[Close]

BLAST of CD860155 vs. TrEMBL
Match: Q94IV0_ARATH (Exportin 1b OS=Arabidopsis thaliana GN=xpo1b PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.591e-21
Identity = 55/85 (64.71%), Postives = 63/85 (74.12%), Query Frame = -1

Query:  474 ASFPNMTTLEVTQFVNGFFKSTTDLSTCETHIRDFLIQSKEFSAQDNKDLYXXXXXXXXXXXXXRMLSIPGLIAPSELQDEMVDS 728
            +SFPNMTT EVTQFVNG ++S  D+   + +IRDFLIQSKEFSAQDNKDLY             RMLSIPGLIAPSE+QD+M DS
Sbjct:  992 SSFPNMTTTEVTQFVNGLYESRNDVGRFKDNIRDFLIQSKEFSAQDNKDLYAEEAAAQMERERQRMLSIPGLIAPSEIQDDMADS 1076

[Close]

BLAST of CD860155 vs. TrEMBL
Match: Q0WV73_ARATH (Exportin1 (XPO1) like protein (Fragment) OS=Arabidopsis thaliana GN=At3g03110 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.591e-21
Identity = 55/85 (64.71%), Postives = 63/85 (74.12%), Query Frame = -1

Query:  474 ASFPNMTTLEVTQFVNGFFKSTTDLSTCETHIRDFLIQSKEFSAQDNKDLYXXXXXXXXXXXXXRMLSIPGLIAPSELQDEMVDS 728
            +SFPNMTT EVTQFVNG ++S  D+   + +IRDFLIQSKEFSAQDNKDLY             RMLSIPGLIAPSE+QD+M DS
Sbjct:  318 SSFPNMTTTEVTQFVNGLYESRNDVGRFKDNIRDFLIQSKEFSAQDNKDLYAEEAAAQMERERQRMLSIPGLIAPSEIQDDMADS 402

[Close]

BLAST of CD860155 vs. TrEMBL
Match: Q9SMV6_ARATH (Exportin1 (XPO1) protein OS=Arabidopsis thaliana GN=xpo1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.714e-21
Identity = 55/85 (64.71%), Postives = 63/85 (74.12%), Query Frame = -1

Query:  474 ASFPNMTTLEVTQFVNGFFKSTTDLSTCETHIRDFLIQSKEFSAQDNKDLYXXXXXXXXXXXXXRMLSIPGLIAPSELQDEMVDS 728
            +SFPNMT  EVTQFVNG ++S  D S  + +IRDFL+QSKEFSAQDNKDLY             RMLSIPGLIAP+E+QDEMVDS
Sbjct:  991 SSFPNMTAAEVTQFVNGLYESRNDPSGFKNNIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMVDS 1075

[Close]

BLAST of CD860155 vs. SwissProt
Match: XPO1_RAT (Exportin-1 OS=Rattus norvegicus GN=Xpo1 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 8.639e-9
Identity = 29/89 (32.58%), Postives = 47/89 (52.81%), Query Frame = -1

Query:  477 KASFPNMTTLEVTQFVNGFFKSTTDLSTCETHIRDFLIQSKEFSAQDNKDLY----XXXXXXXXXXXXXRMLSIPGLIAPSELQDEMVD 731
            K++FP++   +V  FV G F    D+   + H+RDFL+Q KEF+ +D  DL+                   +S+PG++ P E+ +EM D
Sbjct:  983 KSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLFLEERETALRQAQEEKHKLQMSVPGILNPHEIPEEMCD 1071

[Close]

BLAST of CD860155 vs. SwissProt
Match: XPO1_MOUSE (Exportin-1 OS=Mus musculus GN=Xpo1 PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 8.639e-9
Identity = 29/89 (32.58%), Postives = 47/89 (52.81%), Query Frame = -1

Query:  477 KASFPNMTTLEVTQFVNGFFKSTTDLSTCETHIRDFLIQSKEFSAQDNKDLY----XXXXXXXXXXXXXRMLSIPGLIAPSELQDEMVD 731
            K++FP++   +V  FV G F    D+   + H+RDFL+Q KEF+ +D  DL+                   +S+PG++ P E+ +EM D
Sbjct:  983 KSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLFLEERETALRQAQEEKHKLQMSVPGILNPHEIPEEMCD 1071

[Close]

BLAST of CD860155 vs. SwissProt
Match: XPO1_HUMAN (Exportin-1 OS=Homo sapiens GN=XPO1 PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.474e-8
Identity = 30/89 (33.71%), Postives = 47/89 (52.81%), Query Frame = -1

Query:  477 KASFPNMTTLEVTQFVNGFFKSTTDLSTCETHIRDFLIQSKEFSAQDNKDLY----XXXXXXXXXXXXXRMLSIPGLIAPSELQDEMVD 731
            K++FP++   +V  FV G F    D+   + H+RDFL+Q KEF+ +D  DL+                 R +S+PG+  P E+ +EM D
Sbjct:  983 KSAFPHLQDAQVKLFVTGLFSLNQDIPAFKEHLRDFLVQIKEFAGEDTSDLFLEEREIALRQADEEKHKRQMSVPGIFNPHEIPEEMCD 1071

[Close]

BLAST of CD860155 vs. TAIR peptide
Match: AT3G03110.1 (| Symbols: XPO1B, CRM1B | exportin 1B | chr3:708966-716879 FORWARD LENGTH=1076)

HSP 1 Score: 107.071 bits (266), Expect = 1.048e-23
Identity = 55/85 (64.71%), Postives = 63/85 (74.12%), Query Frame = -1

Query:  474 ASFPNMTTLEVTQFVNGFFKSTTDLSTCETHIRDFLIQSKEFSAQDNKDLYXXXXXXXXXXXXXRMLSIPGLIAPSELQDEMVDS 728
            +SFPNMTT EVTQFVNG ++S  D+   + +IRDFLIQSKEFSAQDNKDLY             RMLSIPGLIAPSE+QD+M DS
Sbjct:  992 SSFPNMTTTEVTQFVNGLYESRNDVGRFKDNIRDFLIQSKEFSAQDNKDLYAEEAAAQMERERQRMLSIPGLIAPSEIQDDMADS 1076

[Close]

BLAST of CD860155 vs. TAIR peptide
Match: AT5G17020.2 (| Symbols: XPO1A | exportin 1A | chr5:5594904-5602467 FORWARD LENGTH=1060)

HSP 1 Score: 106.301 bits (264), Expect = 1.788e-23
Identity = 55/85 (64.71%), Postives = 63/85 (74.12%), Query Frame = -1

Query:  474 ASFPNMTTLEVTQFVNGFFKSTTDLSTCETHIRDFLIQSKEFSAQDNKDLYXXXXXXXXXXXXXRMLSIPGLIAPSELQDEMVDS 728
            +SFPNMT  EVTQFVNG ++S  D S  + +IRDFL+QSKEFSAQDNKDLY             RMLSIPGLIAP+E+QDEMVDS
Sbjct:  976 SSFPNMTAAEVTQFVNGLYESRNDPSGFKNNIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMVDS 1060

[Close]

BLAST of CD860155 vs. TAIR peptide
Match: AT5G17020.1 (| Symbols: XPO1A, ATCRM1, ATXPO1, XPO1, HIT2 | exportin 1A | chr5:5594904-5602467 FORWARD LENGTH=1075)

HSP 1 Score: 106.301 bits (264), Expect = 1.788e-23
Identity = 55/85 (64.71%), Postives = 63/85 (74.12%), Query Frame = -1

Query:  474 ASFPNMTTLEVTQFVNGFFKSTTDLSTCETHIRDFLIQSKEFSAQDNKDLYXXXXXXXXXXXXXRMLSIPGLIAPSELQDEMVDS 728
            +SFPNMT  EVTQFVNG ++S  D S  + +IRDFL+QSKEFSAQDNKDLY             RMLSIPGLIAP+E+QDEMVDS
Sbjct:  991 SSFPNMTAAEVTQFVNGLYESRNDPSGFKNNIRDFLVQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPNEIQDEMVDS 1075

The following BLAST results are available for this feature:

BLAST of CD860155 vs. TrEMBL
BLAST of CD860155 vs. SwissProt
BLAST of CD860155 vs. TAIR peptide

BLAST of CD860155 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
A5BVQ5_VITVI	2.220e-23	69.05	Putative uncharacterized protein OS=Vitis vinifera...	[more]
B9S1Z9_RICCO	6.459e-23	67.86	Chromosome region maintenance protein 1/exportin, ...	[more]
B9I8G4_POPTR	6.459e-23	67.86	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D1MAF2_SOLLC	1.439e-22	67.86	Exportin-1 OS=Solanum lycopersicum GN=Xpo1 PE=2 SV...	[more]
B9IQ04_POPTR	3.206e-22	66.67	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q9M9N0_ARATH	1.591e-21	64.71	Putative exportin1 (XPO1) protein OS=Arabidopsis t...	[more]
Q94KD5_ARATH	1.591e-21	64.71	AT3g03110/T17B22_20 OS=Arabidopsis thaliana PE=2 S...	[more]
Q94IV0_ARATH	1.591e-21	64.71	Exportin 1b OS=Arabidopsis thaliana GN=xpo1b PE=2 ...	[more]
Q0WV73_ARATH	1.591e-21	64.71	Exportin1 (XPO1) like protein (Fragment) OS=Arabid...	[more]
Q9SMV6_ARATH	2.714e-21	64.71	Exportin1 (XPO1) protein OS=Arabidopsis thaliana G...	[more]

BLAST of CD860155 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 3


Match Name	E-value	Identity	Description
XPO1_RAT	8.639e-9	32.58	Exportin-1 OS=Rattus norvegicus GN=Xpo1 PE=2 SV=1	[more]
XPO1_MOUSE	8.639e-9	32.58	Exportin-1 OS=Mus musculus GN=Xpo1 PE=1 SV=1	[more]
XPO1_HUMAN	1.474e-8	33.71	Exportin-1 OS=Homo sapiens GN=XPO1 PE=1 SV=1	[more]

BLAST of CD860155 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
AT3G03110.1	1.048e-23	64.71	\| Symbols: XPO1B, CRM1B \| exportin 1B \| chr3:70896...	[more]
AT5G17020.2	1.788e-23	64.71	\| Symbols: XPO1A \| exportin 1A \| chr5:5594904-5602...	[more]
AT5G17020.1	1.788e-23	64.71	\| Symbols: XPO1A, ATCRM1, ATXPO1, XPO1, HIT2 \| exp...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 58..71 score
None	No IPR available	PANTHER	PTHR11223	EXPORTIN 1/5	coord: 2..85 score: 1.2
None	No IPR available	PANTHER	PTHR11223:SF2	EXPORTIN 1 (CHROMOSOME REGION MAINTENANCE PROTEIN 1)	coord: 2..85 score: 1.2
None	No IPR available	SEG	seg	seg	coord: 54..67 score
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10	no description	coord: 3..45 score: 3.3
IPR014877	Exportin 1, C-terminal	PFAM	PF08767	CRM1_C	coord: 3..45 score: 4
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 4..46 score: 1

Properties


Property Name	Value
Singlet in analysis	Pisum sativum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CD860155 ID=CD860155; Name=CD860155; organism=Pisum sativum; type=EST; length=734bp
TCAATATCCCTAAGTATTAATTGAAGGGAAAAATACAAAATATAAAACCA
CAAGGGTTTTCTGCACAAACCGCCAGAAGTTAGGTGGTCGCCCCTAAATA
GTCATCATCACTTCAAACGAGACTTCCATCTTCGTTCAACAAAGATGCCT
TCATGAATTCCTTACAAATGACCCAACATTATCATTCTCGATTAGTAAAT
CAATAATCTACACTCACCCCATGGACAAGGCAATATTGCCGGCTAGGTAA
AACTTTGAAAAACCTGCCAAACCAGTCCCAACATAAAATATTGGGAAGAG
AGTAAAAGCTAAACTTGGAGAAAAAAGTTGCACCTATTCTCAGAGTCAAT
GTTAATTGATTGAATCACGGAGCCTGTGAAATACACTAAAATGCCCATGG
TATTAATACTAACTTCCACGCTGTTTAATCTACCTATGAGTCCACCATTT
CGTCTTGCAACTAAATCAACCTATGAGTCCACCATTTCGTCTTGCAACTC
GCTTGGCGCAATCAGCCCCGGAATAGAAAGCATTCTTTGTCGTTCCCTCT
CTCTCTGTGCGGCAGCCTCCTCGGCATAGAGGTCTTTGTTATCCTGAGCT
GAAAATTCTTTTGACTGTATAAGAAAATCTCGTATATGAGTTTCACATGT
AGAGAGATCCGTTGTAGACTTGAAGAAGCCATTAACAAATTGGGTAACCT
CAAGTGTTGTCATATTAGGAAAAGAAGCCTTAGA

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like
IPR014877	XPO1_C_dom
IPR016024	ARM-type_fold

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