L40424

EST Overview
NameL40424
Unique NameL40424
TypeEST
OrganismPisum sativum (pea)
Sequence length407
Libraries
Library NameType
LIBEST_001282 Pea seedling root tipcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Pisum sativum unigene v1Pisum sativum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Pisum sativum unigene v12010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Pisum sativum unigene v12010-12-29
Homology
BLAST of L40424 vs. TrEMBL
Match: D7T104_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_85.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00036699001 PE=4 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 5.488e-9
Identity = 29/62 (46.77%), Postives = 43/62 (69.35%), Query Frame = 3
Query:  147 QGKKVAPEKGY*EGEKKSSEALASGVGWLSDDSDDE-PQVPNTEPPLCNFHKDDEYHQLIID 329
            + KK+  +K   + E+K++ A+A+GV W SD+SDDE P+    EPPL N  KD+E+H LI+D
Sbjct:  585 RAKKLLQKKATRKEERKAA-AMAAGVDWYSDESDDESPEQKLREPPLPNLLKDEEHHHLILD 645          

HSP 2 Score: 28.8758 bits (63), Expect = 5.488e-9
Identity = 13/24 (54.17%), Postives = 19/24 (79.17%), Query Frame = 2
Query:  329 SSLQKYGDALEIINRTLGLAHTFL 400
            +SL+KY +AL+IIN TL LA+  +
Sbjct:  651 ASLRKYWEALDIINLTLRLAYNIM 674          
The following BLAST results are available for this feature:
BLAST of L40424 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 1
Match NameE-valueIdentityDescription
D7T104_VITVI5.488e-946.77Whole genome shotgun sequence of line PN40024, sca... [more]
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InterPro
Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 41..52
score

Properties
Property NameValue
Singlet in analysisPisum sativum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>L40424 ID=L40424; Name=L40424; organism=Pisum sativum; type=EST; length=407bp
GACCGCTTGTGGCATCTAGAGCCTAGTGAGAAACTCTAATTCGTGCTCAC
CCAATGGGTCCACTGTCTATGGGCGCCAATTTTTTGGACCTGTTTCTGTT
GGATCTGAGTTTGAACGGGTGGATTCTATTATAGGTTGAAAGCTTCCAGG
GCAAAAAAGTTGCTCCAGAAAAAGGCTATTGAGAAGGAGAGAAGAAAAGT
TCCGAGGCATTGGCCTCTGGAGTTGGCTGGTTAAGTGATGATTCAGATGA
TGAGCCTCAGGTACCAAACACAGAACCTCCCTTGTGCAATTTTCACAAAG
ATGATGAATATCACCAGCTAATCATTGATCATCCTTGCAAAAATATGGGG
ACGCATTGGAAATTATCAATCGCACTCTAGGATTAGCTCATACTTTTCTG
TCTGCCG
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