GH720756

EST Overview


Name	GH720756
Unique Name	GH720756
Type	EST
Organism	Pisum sativum (pea)
Sequence length	547

Libraries


Library Name	Type
LIBEST_024272 BACI	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v1	Pisum sativum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
KEGG analysis for Pisum sativum unigene v1	2011-01-05
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Homology

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BLAST of GH720756 vs. TrEMBL
Match: Q2PEQ2_TRIPR (Putative U1 snRNP 70K protein OS=Trifolium pratense PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 6.107e-59
Identity = 122/169 (72.19%), Postives = 123/169 (72.78%), Query Frame = 3

Query:   27 RYKAQNRANVLQLKLIGQSHPTGLTANLLKLFXXXXXXXXXXXXXXXXCPPLTGMAQFVTKFAXXXXXXXXXXXXXXXXXXXXXXXXHKLRLEKGAVKAAEELEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKRVRLVTDTESNKPRGYAFIEYL 533
            R KAQNRANVLQLKLIGQSHPTGLT NLLKLF                CPPLTGMAQFV+KFA                        HKLRLEKGA KAAEELEKYDP  DPNISGDPYKTLFVARLSYETTESRIKREFE YGAIKRVRLVTDTESNKPRGYAFIEYL
Sbjct:   20 RTKAQNRANVLQLKLIGQSHPTGLTTNLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPGEPEYSPPVPVVETPAERRARVHKLRLEKGAAKAAEELEKYDPHTDPNISGDPYKTLFVARLSYETTESRIKREFESYGAIKRVRLVTDTESNKPRGYAFIEYL 188

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BLAST of GH720756 vs. TrEMBL
Match: B9S6I9_RICCO (U1 small nuclear ribonucleoprotein 70 kDa, putative OS=Ricinus communis GN=RCOM_0536950 PE=4 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.033e-54
Identity = 112/170 (65.88%), Postives = 120/170 (70.59%), Query Frame = 3

Query:   24 GRYKAQNRANVLQLKLIGQSHPTGLTANLLKLFXXXXXXXXXXXXXXXXCPPLTGMAQFVTKFAXXXXXXXXXXXXXXXXXXXXXXXXHKLRLEKGAVKAAEELEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKRVRLVTDTESNKPRGYAFIEYL 533
            G  K QNRANVLQLKLIGQSHPTGLTANLLKLF                CPP TGMAQFVT+FA                        H+LRLEKGA KAAEEL+KYDP +DPNISGDPYKTLFVARL+YETTESRIKREFE YG IKRVRL+TD  +NKPRGYAFIEY+
Sbjct:   18 GATKGQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPYTGMAQFVTQFAEPGDPEYAPPVQEAETPTQRRARIHQLRLEKGAEKAAEELQKYDPNSDPNISGDPYKTLFVARLNYETTESRIKREFESYGPIKRVRLITDKAANKPRGYAFIEYM 187

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BLAST of GH720756 vs. TrEMBL
Match: D7SPF6_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_23.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00018981001 PE=4 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 4.529e-54
Identity = 111/169 (65.68%), Postives = 118/169 (69.82%), Query Frame = 3

Query:   27 RYKAQNRANVLQLKLIGQSHPTGLTANLLKLFXXXXXXXXXXXXXXXXCPPLTGMAQFVTKFAXXXXXXXXXXXXXXXXXXXXXXXXHKLRLEKGAVKAAEELEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKRVRLVTDTESNKPRGYAFIEYL 533
            R KAQNRANVLQLKLIGQSHPTGLTANLLKLF                CPP TGMAQF + FA                        HKLRLEKGA KA EE +KYDP NDPNISGDPYKTLFVARL+YETTESRIKREFE YG IKRVRL+TD E++KPRGYAFIEY+
Sbjct:   19 RTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKPPPEKRKCPPYTGMAQFASNFAEPGEPEYSPPVQKAETPAQRRARIHKLRLEKGAEKATEEFQKYDPNNDPNISGDPYKTLFVARLNYETTESRIKREFEAYGPIKRVRLITDKETSKPRGYAFIEYM 187

[Close]

BLAST of GH720756 vs. TrEMBL
Match: D7LTH2_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_485414 PE=4 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.572e-49
Identity = 102/169 (60.36%), Postives = 115/169 (68.05%), Query Frame = 3

Query:   27 RYKAQNRANVLQLKLIGQSHPTGLTANLLKLFXXXXXXXXXXXXXXXXCPPLTGMAQFVTKFAXXXXXXXXXXXXXXXXXXXXXXXXHKLRLEKGAVKAAEELEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKRVRLVTDTESNKPRGYAFIEYL 533
            R K QNRANVLQLKL+GQSHPTGLT NLLKLF                CPP TGMAQFV+ FA                        HKLRLEKG  KAAE+L+KYDP NDPN +GDPYKTLFV+RL+YE++ES+IKREFE YG IKRV LVTD  +NKP+GYAFIEY+
Sbjct:   19 RAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKPPPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAEDLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYM 187

[Close]

BLAST of GH720756 vs. TrEMBL
Match: Q2QKB6_WHEAT (U1 snRNP-interacting 70 kDa protein OS=Triticum aestivum GN=U1-70K PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.144e-47
Identity = 97/173 (56.07%), Postives = 116/173 (67.05%), Query Frame = 3

Query:   12 SGRPGRYKAQNRANVLQLKLIGQSHPTGLTANLLKLFXXXXXXXXXXXXXXXXCPPLTGMAQFVTKFAXXXXXXXXXXXXXXXXXXXXXXXXHKLRLEKGAVKAAEELEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKRVRLVTDTESNKPRGYAFIEY 530
            +G   R KAQ+RAN+LQLKLIGQSHPTGLT NLLKLF                 P  +GM+QFV++FA                         +L+LE+GA K AEEL+KYDPQNDPN++GDPYKTLFVARL YET+E ++KR+FE YG IKRVRLVTD  +NKPRGYAF+EY
Sbjct:   14 AGVQSRVKAQSRANLLQLKLIGQSHPTGLTTNLLKLFEPRPPLEHKPPLEKRKLPAYSGMSQFVSRFAEPGDPEYAPPVPTCETRAEKKDRIRQLKLEEGAAKVAEELQKYDPQNDPNVTGDPYKTLFVARLGYETSEQKVKRDFEAYGPIKRVRLVTDKVTNKPRGYAFVEY 186

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BLAST of GH720756 vs. TrEMBL
Match: Q33BE1_ORYSJ (Os10g0115600 protein OS=Oryza sativa subsp. japonica GN=Os10g0115600 PE=4 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.843e-45
Identity = 98/176 (55.68%), Postives = 112/176 (63.64%), Query Frame = 3

Query:    6 DSSGRPGRYKAQNRANVLQLKLIGQSHPTGLTANLLKLFXXXXXXXXXXXXXXXXCPPLTGMAQFVTKFAXXXXXXXXXXXXXXXXXXXXXXXXHKLRLEKGAVKAAEELEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKRVRLVTDTESNKPRGYAFIEYL 533
            D  G   R K Q R NV QLKL+GQ HPTGLT NLLKLF                 P  TGMAQFV++FA                         K +L++GA K AEEL+KYDPQ+DPN +GDPYKTLFVARL+YET+E R+KREFE YG IKRVRLVTD E+NKPRGYAFIEY+
Sbjct:   14 DGGGMQSRTKGQ-RVNVQQLKLMGQGHPTGLTPNLLKLFEPRPPLDFKPPVEKRKLPAYTGMAQFVSQFAEPGDPEYAPPVPTCETKAEKKDRIRKSKLDQGAAKVAEELQKYDPQSDPNATGDPYKTLFVARLNYETSEHRVKREFEAYGPIKRVRLVTDKETNKPRGYAFIEYM 188

[Close]

BLAST of GH720756 vs. TrEMBL
Match: Q2EIH1_ORYSJ (U1 small nuclear ribonucleoprotein 70K OS=Oryza sativa subsp. japonica PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.843e-45
Identity = 98/176 (55.68%), Postives = 112/176 (63.64%), Query Frame = 3

Query:    6 DSSGRPGRYKAQNRANVLQLKLIGQSHPTGLTANLLKLFXXXXXXXXXXXXXXXXCPPLTGMAQFVTKFAXXXXXXXXXXXXXXXXXXXXXXXXHKLRLEKGAVKAAEELEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKRVRLVTDTESNKPRGYAFIEYL 533
            D  G   R K Q R NV QLKL+GQ HPTGLT NLLKLF                 P  TGMAQFV++FA                         K +L++GA K AEEL+KYDPQ+DPN +GDPYKTLFVARL+YET+E R+KREFE YG IKRVRLVTD E+NKPRGYAFIEY+
Sbjct:   14 DGGGMQSRTKGQ-RVNVQQLKLMGQGHPTGLTPNLLKLFEPRPPLDFKPPVEKRKLPAYTGMAQFVSQFAEPGDPEYAPPVPTCETKAEKKDRIRKSKLDQGAAKVAEELQKYDPQSDPNATGDPYKTLFVARLNYETSEHRVKREFEAYGPIKRVRLVTDKETNKPRGYAFIEYM 188

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BLAST of GH720756 vs. TrEMBL
Match: B9HEV8_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_219158 PE=4 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.109e-43
Identity = 97/162 (59.88%), Postives = 103/162 (63.58%), Query Frame = 3

Query:   24 GRYKAQNRANVLQLKLIGQSHPTGLTANLLKLFXXXXXXXXXXXXXXXXCPPLTGMAQFVTKFAXXXXXXXXXXXXXXXXXXXXXXXXHKLRLEKGAVKAAEELEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKRVRLVTDTESNKPR 509
            G  K QNRANVLQLKLIGQSHPTGLTANLLKLF                CPP  GMAQFV+ FA                        H  RLEKGA KAAEEL+KYDP NDPN+SGDPYKTLFVARLSYETTESRIKREFE YG IKRV +   T++   R
Sbjct:   18 GSAKGQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEFKPPPEKRKCPPYLGMAQFVSHFAEPGDPEYAPPIKEAETPAERKARIHAARLEKGAEKAAEELQKYDPTNDPNVSGDPYKTLFVARLSYETTESRIKREFESYGPIKRVGIFEYTQAGLVR 179

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BLAST of GH720756 vs. TrEMBL
Match: B9G790_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_30528 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.332e-42
Identity = 98/189 (51.85%), Postives = 112/189 (59.26%), Query Frame = 3

Query:    6 DSSGRPGRYKAQNRANVLQLKLIGQSHPTGLTANLLKLFXXXXXXXXXXXXXXXXCPPLTGMAQFVTKFAXXXXXXXXXXXXXXXXXXXXXXXXHKLRLEKGAVKAAEELEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKR-------------VRLVTDTESNKPRGYAFIEYL 533
            D  G   R K Q R NV QLKL+GQ HPTGLT NLLKLF                 P  TGMAQFV++FA                         K +L++GA K AEEL+KYDPQ+DPN +GDPYKTLFVARL+YET+E R+KREFE YG IKR             VRLVTD E+NKPRGYAFIEY+
Sbjct:   14 DGGGMQSRTKGQ-RVNVQQLKLMGQGHPTGLTPNLLKLFEPRPPLDFKPPVEKRKLPAYTGMAQFVSQFAEPGDPEYAPPVPTCETKAEKKDRIRKSKLDQGAAKVAEELQKYDPQSDPNATGDPYKTLFVARLNYETSEHRVKREFEAYGPIKRAWGFYILGFIRLLVRLVTDKETNKPRGYAFIEYM 201

[Close]

BLAST of GH720756 vs. TrEMBL
Match: B8BFL9_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_32563 PE=4 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.332e-42
Identity = 98/189 (51.85%), Postives = 112/189 (59.26%), Query Frame = 3

Query:    6 DSSGRPGRYKAQNRANVLQLKLIGQSHPTGLTANLLKLFXXXXXXXXXXXXXXXXCPPLTGMAQFVTKFAXXXXXXXXXXXXXXXXXXXXXXXXHKLRLEKGAVKAAEELEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKR-------------VRLVTDTESNKPRGYAFIEYL 533
            D  G   R K Q R NV QLKL+GQ HPTGLT NLLKLF                 P  TGMAQFV++FA                         K +L++GA K AEEL+KYDPQ+DPN +GDPYKTLFVARL+YET+E R+KREFE YG IKR             VRLVTD E+NKPRGYAFIEY+
Sbjct:   14 DGGGMQSRTKGQ-RVNVQQLKLMGQGHPTGLTPNLLKLFEPRPPLDFKPPVEKRKLPAYTGMAQFVSQFAEPGDPEYAPPVPTCETKAEKKDRIRKSKLDQGAAKVAEELQKYDPQSDPNATGDPYKTLFVARLNYETSEHRVKREFEAYGPIKRAWGFYILGFIRLLVRLVTDKETNKPRGYAFIEYM 201

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BLAST of GH720756 vs. SwissProt
Match: RU17_ARATH (U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.925e-50
Identity = 102/169 (60.36%), Postives = 115/169 (68.05%), Query Frame = 3

Query:   27 RYKAQNRANVLQLKLIGQSHPTGLTANLLKLFXXXXXXXXXXXXXXXXCPPLTGMAQFVTKFAXXXXXXXXXXXXXXXXXXXXXXXXHKLRLEKGAVKAAEELEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKRVRLVTDTESNKPRGYAFIEYL 533
            R K QNRANVLQLKL+GQSHPTGLT NLLKLF                CPP TGMAQFV+ FA                        HKLRLEKG  KAAE+L+KYDP NDPN +GDPYKTLFV+RL+YE++ES+IKREFE YG IKRV LVTD  +NKP+GYAFIEY+
Sbjct:   19 RAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKPPPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAEDLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYM 187

[Close]

BLAST of GH720756 vs. SwissProt
Match: RU17_MOUSE (U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus GN=Snrnp70 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 9.319e-21
Identity = 44/78 (56.41%), Postives = 59/78 (75.64%), Query Frame = 3

Query:  297 RLEKGAVKAAEELEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKRVRLVTDTESNKPRGYAFIEY 530
            ++E+   +   EL+ +DP NDPN  GD +KTLFVAR++Y+TTES+++REFE YG IKR+ +V    S KPRGYAFIEY
Sbjct:   74 KIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEY 151

[Close]

BLAST of GH720756 vs. SwissProt
Match: RU17_HUMAN (U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens GN=SNRNP70 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 9.319e-21
Identity = 44/78 (56.41%), Postives = 59/78 (75.64%), Query Frame = 3

Query:  297 RLEKGAVKAAEELEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKRVRLVTDTESNKPRGYAFIEY 530
            ++E+   +   EL+ +DP NDPN  GD +KTLFVAR++Y+TTES+++REFE YG IKR+ +V    S KPRGYAFIEY
Sbjct:   74 KIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEY 151

[Close]

BLAST of GH720756 vs. SwissProt
Match: RU17_BOVIN (U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.319e-21
Identity = 44/78 (56.41%), Postives = 59/78 (75.64%), Query Frame = 3

Query:  297 RLEKGAVKAAEELEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKRVRLVTDTESNKPRGYAFIEY 530
            ++E+   +   EL+ +DP NDPN  GD +KTLFVAR++Y+TTES+++REFE YG IKR+ +V    S KPRGYAFIEY
Sbjct:   74 KIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEY 151

[Close]

BLAST of GH720756 vs. SwissProt
Match: RU17_XENTR (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.346e-19
Identity = 43/78 (55.13%), Postives = 58/78 (74.36%), Query Frame = 3

Query:  297 RLEKGAVKAAEELEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKRVRLVTDTESNKPRGYAFIEY 530
            ++E+       EL+ +DP ND N  GD +KTLFVAR++Y+TTES+++REFE YG IKR+ +V +  S KPRGYAFIEY
Sbjct:   74 KIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEY 151

[Close]

BLAST of GH720756 vs. SwissProt
Match: RU17_XENLA (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.644e-18
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = 3

Query:  297 RLEKGAVKAAEELEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKRVRLVTD---TESNKPRGYAFIEY 530
            ++E+       EL+ +DP ND N  GD +KTLFVAR++Y+TTES+++REFE YG IKR+ +V +     S KPRGYAFIEY
Sbjct:   74 KIERRQQDVENELKIWDPHNDQNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHIVYNKGSEGSGKPRGYAFIEY 154

[Close]

BLAST of GH720756 vs. SwissProt
Match: RU17_DROME (U1 small nuclear ribonucleoprotein 70 kDa OS=Drosophila melanogaster GN=snRNP70K PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.148e-17
Identity = 39/78 (50.00%), Postives = 58/78 (74.36%), Query Frame = 3

Query:  297 RLEKGAVKAAEELEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKRVRLVTDTESNKPRGYAFIEY 530
            + E+ A K   E+  +DP    N + DP++TLF+AR++Y+T+ES+++REFE YG IK++ L+ D ES KP+GYAFIEY
Sbjct:   73 KAEQVAYKLEREIALWDPTEIKNATEDPFRTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQESGKPKGYAFIEY 150

[Close]

BLAST of GH720756 vs. SwissProt
Match: RU17_SCHPO (U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Schizosaccharomyces pombe GN=usp101 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.882e-13
Identity = 37/85 (43.53%), Postives = 56/85 (65.88%), Query Frame = 3

Query:  291 KLRLEKGAVKAAEE-----LEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKRVRLVTDTESNKPRGYAFIEY 530
            +LRL     K   E     ++ +DP +D ++ GDPYKT+F++RLSY+T ES I+REF  YG I+R+R+V +  + K  GYAF+ +
Sbjct:   64 RLRLRDEKQKQQRERLRSMIKVWDPDHDRHVIGDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVF 148

[Close]

BLAST of GH720756 vs. SwissProt
Match: RU17_DICDI (U1 small nuclear ribonucleoprotein 70 kDa OS=Dictyostelium discoideum GN=snrnp70 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.593e-12
Identity = 33/81 (40.74%), Postives = 57/81 (70.37%), Query Frame = 3

Query:  291 KLRLEKGAVKAAEELEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKRVRLVTDTES-NKPRGYAFIEY 530
            KL++ +   + ++ L+ +DP ++   +GDPYKT+FV+R+SY+TT+ +++ EF  +G IK + LV D+ +  K  GYAFIE+
Sbjct:   68 KLKISENDERISKSLKAWDPYSNSETTGDPYKTIFVSRISYKTTQQKLEFEFGQFGPIKSLFLVKDSNNPEKHTGYAFIEF 148

[Close]

BLAST of GH720756 vs. SwissProt
Match: U1SBP_XENLA (U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Xenopus laevis GN=snrnp35 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.924e-11
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 3

Query:  333 LEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKRVRLVTDTESNKPRGYAFIEY 530
            L +Y P     ++GDP+ TLFV+RLS +TTE ++K  F  YG IKR+RLV D  +   +GYAFIEY
Sbjct:   36 LSRYVPNK--GVTGDPHLTLFVSRLSPQTTEEKLKEVFSRYGDIKRIRLVRDFITGFSKGYAFIEY 99

[Close]

BLAST of GH720756 vs. TAIR peptide
Match: AT3G50670.1 (| Symbols: U1-70K, U1SNRNP | U1 small nuclear ribonucleoprotein-70K | chr3:18826476-18829492 REVERSE LENGTH=427)

HSP 1 Score: 198.364 bits (503), Expect = 2.086e-51
Identity = 102/169 (60.36%), Postives = 115/169 (68.05%), Query Frame = 3

Query:   27 RYKAQNRANVLQLKLIGQSHPTGLTANLLKLFXXXXXXXXXXXXXXXXCPPLTGMAQFVTKFAXXXXXXXXXXXXXXXXXXXXXXXXHKLRLEKGAVKAAEELEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKRVRLVTDTESNKPRGYAFIEYL 533
            R K QNRANVLQLKL+GQSHPTGLT NLLKLF                CPP TGMAQFV+ FA                        HKLRLEKG  KAAE+L+KYDP NDPN +GDPYKTLFV+RL+YE++ES+IKREFE YG IKRV LVTD  +NKP+GYAFIEY+
Sbjct:   19 RAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKPPPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAEDLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYM 187

[Close]

BLAST of GH720756 vs. TAIR peptide
Match: AT3G50670.2 (| Symbols: U1-70K, U1SNRNP | U1 small nuclear ribonucleoprotein-70K | chr3:18828232-18829492 REVERSE LENGTH=204)

HSP 1 Score: 168.703 bits (426), Expect = 1.770e-42
Identity = 88/149 (59.06%), Postives = 98/149 (65.77%), Query Frame = 3

Query:   27 RYKAQNRANVLQLKLIGQSHPTGLTANLLKLFXXXXXXXXXXXXXXXXCPPLTGMAQFVTKFAXXXXXXXXXXXXXXXXXXXXXXXXHKLRLEKGAVKAAEELEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKRV 473
            R K QNRANVLQLKL+GQSHPTGLT NLLKLF                CPP TGMAQFV+ FA                        HKLRLEKG  KAAE+L+KYDP NDPN +GDPYKTLFV+RL+YE++ES+IKREFE YG IKRV
Sbjct:   19 RAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKPPPEKRKCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAEDLKKYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRV 167

[Close]

BLAST of GH720756 vs. TAIR peptide
Match: AT2G43370.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:18013431-18015376 FORWARD LENGTH=333)

HSP 1 Score: 67.0106 bits (162), Expect = 7.255e-12
Identity = 31/63 (49.21%), Postives = 37/63 (58.73%), Query Frame = 3

Query:  342 YDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKRVRLVTDTESNKPRGYAFIEY 530
            YDP  D    GDPY TLFV RLS+ TTE  ++     YG IK +RLV    +   RGY F+EY
Sbjct:   50 YDPSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEY 112

[Close]

BLAST of GH720756 vs. TAIR peptide
Match: AT3G46020.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr3:16912511-16913250 REVERSE LENGTH=102)

HSP 1 Score: 52.7582 bits (125), Expect = 1.416e-7
Identity = 22/51 (43.14%), Postives = 35/51 (68.63%), Query Frame = 3

Query:  390 LFVARLSYETTESRIKREFEPYGAIKRVRLVTDTESNKPRGYAFIEYLGRD 542
            LFV+RLS  TT+  +++ F P+G IK  RL+ D+E+ +P+G+ FI +   D
Sbjct:    9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSED 59

[Close]

BLAST of GH720756 vs. TAIR peptide
Match: AT1G73530.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:27643801-27645386 REVERSE LENGTH=181)

HSP 1 Score: 52.373 bits (124), Expect = 1.849e-7
Identity = 25/78 (32.05%), Postives = 43/78 (55.13%), Query Frame = 3

Query:  297 RLEKGAVKAAEELEKYDPQNDPNISGDPYKTLFVARLSYETTESRIKREFEPYGAIKRVRLVTDTESNKPRGYAFIEY 530
            R + G V  +  L      + P+ S  P   L+V+ LS+ TTE  ++  FE +G +  + +V D  +N+P+G+AF+ Y
Sbjct:   48 RRDIGGVLISSCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRY 125

The following BLAST results are available for this feature:

BLAST of GH720756 vs. TrEMBL
BLAST of GH720756 vs. SwissProt
BLAST of GH720756 vs. TAIR peptide

BLAST of GH720756 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
Q2PEQ2_TRIPR	6.107e-59	72.19	Putative U1 snRNP 70K protein OS=Trifolium pratens...	[more]
B9S6I9_RICCO	2.033e-54	65.88	U1 small nuclear ribonucleoprotein 70 kDa, putativ...	[more]
D7SPF6_VITVI	4.529e-54	65.68	Whole genome shotgun sequence of line PN40024, sca...	[more]
D7LTH2_ARALY	2.572e-49	60.36	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
Q2QKB6_WHEAT	3.144e-47	56.07	U1 snRNP-interacting 70 kDa protein OS=Triticum ae...	[more]
Q33BE1_ORYSJ	3.843e-45	55.68	Os10g0115600 protein OS=Oryza sativa subsp. japoni...	[more]
Q2EIH1_ORYSJ	3.843e-45	55.68	U1 small nuclear ribonucleoprotein 70K OS=Oryza sa...	[more]
B9HEV8_POPTR	2.109e-43	59.88	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
B9G790_ORYSJ	2.332e-42	51.85	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B8BFL9_ORYSI	2.332e-42	51.85	Putative uncharacterized protein OS=Oryza sativa s...	[more]

BLAST of GH720756 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RU17_ARATH	1.925e-50	60.36	U1 small nuclear ribonucleoprotein 70 kDa OS=Arabi...	[more]
RU17_MOUSE	9.319e-21	56.41	U1 small nuclear ribonucleoprotein 70 kDa OS=Mus m...	[more]
RU17_HUMAN	9.319e-21	56.41	U1 small nuclear ribonucleoprotein 70 kDa OS=Homo ...	[more]
RU17_BOVIN	9.319e-21	56.41	U1 small nuclear ribonucleoprotein 70 kDa OS=Bos t...	[more]
RU17_XENTR	1.346e-19	55.13	U1 small nuclear ribonucleoprotein 70 kDa OS=Xenop...	[more]
RU17_XENLA	9.644e-18	53.09	U1 small nuclear ribonucleoprotein 70 kDa OS=Xenop...	[more]
RU17_DROME	2.148e-17	50.00	U1 small nuclear ribonucleoprotein 70 kDa OS=Droso...	[more]
RU17_SCHPO	1.882e-13	43.53	U1 small nuclear ribonucleoprotein 70 kDa homolog ...	[more]
RU17_DICDI	1.593e-12	40.74	U1 small nuclear ribonucleoprotein 70 kDa OS=Dicty...	[more]
U1SBP_XENLA	3.924e-11	51.52	U11/U12 small nuclear ribonucleoprotein 35 kDa pro...	[more]

BLAST of GH720756 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Pisum sativum unigene v1 vs TAIR 10 peptide)
Total hits: 5


Match Name	E-value	Identity	Description
AT3G50670.1	2.086e-51	60.36	\| Symbols: U1-70K, U1SNRNP \| U1 small nuclear ribo...	[more]
AT3G50670.2	1.770e-42	59.06	\| Symbols: U1-70K, U1SNRNP \| U1 small nuclear ribo...	[more]
AT2G43370.1	7.255e-12	49.21	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT3G46020.1	1.416e-7	43.14	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT1G73530.1	1.849e-7	32.05	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 130..176 score: 1.7
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 128..181 score: 13
IPR012677	Nucleotide-binding, alpha-beta plait	GENE3D	3.30.70.330	no description	coord: 116..176 score: 4.1
IPR022023	U1 small nuclear ribonucleoprotein of 70kDa MW N-terminal	PFAM	PF12220	U1snRNP70_N	coord: 30..120 score: 9.9
None	No IPR available	PANTHER	PTHR13952	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD	coord: 25..176 score: 9.1
None	No IPR available	SEG	seg	seg	coord: 41..56 score: NAcoord: 72..95 score
None	No IPR available	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 116..176 score: 4.1
None	No IPR available	SEG	seg	seg	coord: 16..37 score: NAcoord: 42..65 score: NAcoord: 78..100 score

Properties


Property Name	Value
Singlet in analysis	Pisum sativum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GH720756 ID=GH720756; Name=GH720756; organism=Pisum sativum; type=EST; length=547bp
TTATCGATTCGAGCGGCCGCCCGGGCAGGTACAAAGCCCAGAATCGCGCC
AACGTCCTTCAACTCAAGCTGATTGGACAGAGTCATCCAACTGGTCTCAC
CGCAAATTTGCTGAAGCTGTTTGAGCCTAGGCCTCCACTGGAATACAAAC
CTCCTCCGGAGAAAAGAAAATGTCCTCCTTTAACAGGGATGGCACAATTT
GTCACCAAGTTTGCTGAGCCTGGTGAACCAGAATATTCTCCGCCTGTTCC
AGTGGTTGAAACTCCTGTAGAAAGAAGGGCCAGAGTGCACAAGTTAAGAC
TTGAGAAAGGAGCCGTGAAAGCTGCTGAGGAGCTTGAGAAATATGATCCA
CAAAACGATCCAAATATATCGGGAGACCCATACAAGACTTTATTTGTGGC
CAGACTTAGTTATGAGACTACAGAGAGCAGAATCAAAAGGGAGTTTGAGC
CATATGGTGCAATCAAACGGGTTCGACTGGTTACTGATACTGAGTCAAAT
AAGCCCAGGGGTTATGCATTCATTGAGTACCTCGGCCGCGACCACGC

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR022023	U1snRNP70_N

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