Cicer arietinum unigene v1

Overview
Analysis NameCicer arietinum unigene v1
Methodcap3 (1.0)
SourceCicer arietinum unigene v1
Date performed2010-12-27

An assembly of 40,472 EST sequences downloaded from NCBI dbEST using the cap3 assembly software (parameter: -p 90). 34,985 ESTs were used after trimming using crossmatch against UniVec_Core (parameter: -minmatch 10 -penalty -2 -minscore 20 -screen) and filtering out rRNA/tRNA contamination using tblastx (parameter: -e 1e-6). Poly-A tail was also trimmed after RNA filtering. The assembly results in 3,755 contigs and 9,690 singlets.

Properties
Additional information about this analysis:
Property NameValue
Analysis Typetripal_analysis_unigene
Analysis unigene nameCicer arietinum unigene v1
Analysis unigene num contigs3,755
Analysis unigene num reads34,985
Analysis unigene avg length671
Analysis unigene num clusters
Analysis unigene num singlets9,690