Genome-wide SNP discovery for development of high-density genetic map and QTL mapping of ascochyta blight resistance in chickpea (Cicer arietinum L.)

Publication Overview
TitleGenome-wide SNP discovery for development of high-density genetic map and QTL mapping of ascochyta blight resistance in chickpea (Cicer arietinum L.)
AuthorsDeokar A, Sagi M, Tar'an B
TypeJournal Article
Journal NameTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik
Year2019
CitationDeokar A, Sagi M, Tar'an B. Genome-wide SNP discovery for development of high-density genetic map and QTL mapping of ascochyta blight resistance in chickpea (Cicer arietinum L.). TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik. 2019 Mar 16.

Abstract

KEY MESSAGE
A high-density linkage map of chickpea using 3430 SNPs was constructed and used to identify QTLs and candidate genes for ascochyta blight resistance in chickpea. Chickpea cultivation in temperate conditions is highly vulnerable to ascochyta blight infection. Cultivation of resistant cultivars in combination with fungicide application within an informed disease management package is the most effective method to control ascochyta blight in chickpeas. Identifying new sources of resistance is critical for continued improvement in ascochyta blight resistance in chickpea. The objective of this study was to identify genetic loci and candidate genes controlling the resistance to ascochyta blight in recombinant inbred lines derived from crossing cultivars Amit and ICCV 96029. The RILs were genotyped using the genotyping-by-sequencing procedure and Illumina

Features
This publication contains information about 28 features:
Feature NameUniquenameType
Ca2-ABARCa2-ABARgenetic_marker
Ca2-GDSL2Ca2-GDSL2genetic_marker
Ca2-PEICa2-PEIgenetic_marker
Ca4-ER2Ca4-ER2genetic_marker
Ca5-BTBCa5-BTBgenetic_marker
Cav1sc246.1p121732Cav1sc246.1p121732genetic_marker
Cav1sc30.1p60427Cav1sc30.1p60427genetic_marker
Cav1sc520.1p50440Cav1sc520.1p50440genetic_marker
Cav1sc689.1p195825Cav1sc689.1p195825genetic_marker
SCA3_15444471SCA3_15444471genetic_marker
SCA3_21346384SCA3_21346384genetic_marker
SCA4_21540251SCA4_21540251genetic_marker
SCA4_6022188SCA4_6022188genetic_marker
SCA4_8584363SCA4_8584363genetic_marker
SCA5_20906121SCA5_20906121genetic_marker
SCA6_54348174SCA6_54348174genetic_marker
Ascochyta rabiei disease severityqARDS.CPR-02.LG2.GHQTL
Ascochyta rabiei disease severityqARDS.CPR-02.LG2.2015QTL
Ascochyta rabiei disease severityqARDS.CPR-02.LG2.GH.2QTL
Ascochyta rabiei disease severityqARDS.CPR-02.LG3.GHQTL
Ascochyta rabiei disease severityqARDS.CPR-02.LG3.2014QTL
Ascochyta rabiei disease severityqARDS.CPR-02.LG4.2015QTL
Ascochyta rabiei disease severityqARDS.CPR-02.LG4.2017QTL
Ascochyta rabiei disease severityqARDS.CPR-02.LG4.2014QTL
Ascochyta rabiei disease severityqARDS.CPR-02.LG4.2015.2QTL

Pages

Projects
This publication contains information about 1 projects:
Project NameDescription
Chickpea-Ascochyta_disease_severity-Deokar-2019
Featuremaps
This publication contains information about 1 maps:
Map Name
Chickpea-CPR02-RIL
Stocks
This publication contains information about 1 stocks:
Stock NameUniquenameType
CPR-02CPR-02population
Properties
Additional details for this publication include:
Property NameValue
Publication TypeJournal Article
Publication Date2019 Mar 16
Publication ModelPrint-Electronic
ISSN1432-2242
Journal AbbreviationTheor. Appl. Genet.
Journal CountryGermany
LanguageEnglish
Language Abbreng
DOI10.1007/s00122-019-03322-3
eISSN1432-2242
Elocation10.1007/s00122-019-03322-3
URLhttps://www.ncbi.nlm.nih.gov/pubmed/30879097