Aligning a new reference genetic map of Lupinus angustifolius with the genome sequence of the model legume, Lotus japonicus

Publication Overview
TitleAligning a new reference genetic map of Lupinus angustifolius with the genome sequence of the model legume, Lotus japonicus
AuthorsNelson MN, Moolhuijzen PM, Boersma JG, Chudy M, Lesniewska K, Bellgard M, Oliver RP, Swiecicki W, Wolko B, Cowling WA, Ellwood SR
TypeJournal Article
Journal NameDNA research : an international journal for rapid publication of reports on genes and genomes
Volume17
Issue2
Year2010
Page(s)73-83
CitationNelson MN, Moolhuijzen PM, Boersma JG, Chudy M, Lesniewska K, Bellgard M, Oliver RP, Swiecicki W, Wolko B, Cowling WA, Ellwood SR. Aligning a new reference genetic map of Lupinus angustifolius with the genome sequence of the model legume, Lotus japonicus. DNA research : an international journal for rapid publication of reports on genes and genomes. 2010 Apr; 17(2):73-83.

Abstract

We have developed a dense reference genetic map of Lupinus angustifolius (2n = 40) based on a set of 106 publicly available recombinant inbred lines derived from a cross between domesticated and wild parental lines. The map comprised 1090 loci in 20 linkage groups and three small clusters, drawing together data from several previous mapping publications plus almost 200 new markers, of which 63 were gene-based markers. A total of 171 mainly gene-based, sequence-tagged site loci served as bridging points for comparing the Lu. angustifolius genome with the genome sequence of the model legume, Lotus japonicus via BLASTn homology searching. Comparative analysis indicated that the genomes of Lu. angustifolius and Lo. japonicus are highly diverged structurally but with significant regions of conserved synteny including the region of the Lu. angustifolius genome containing the pod-shatter resistance gene, lentus. We discuss the potential of synteny analysis for identifying candidate genes for domestication traits in Lu. angustifolius and in improving our understanding of Fabaceae genome evolution.

Stocks
This publication contains information about 1 stocks:
Stock NameUniquenameType
83A:476/P27255-RIL-201083A:476/P27255-RIL-2010population
Features
This publication contains information about 240 features:
Feature NameUniquenameType
M47E32A275M47E32A275genetic_marker
M47E32B195M47E32B195genetic_marker
M47E32B212M47E32B212genetic_marker
M47E32B306M47E32B306genetic_marker
M47E35A107M47E35A107genetic_marker
M47E35A80M47E35A80genetic_marker
M47E35B144M47E35B144genetic_marker
M47E41A142M47E41A142genetic_marker
M47E41A177M47E41A177genetic_marker
M47E41A310M47E41A310genetic_marker
M47E41A368M47E41A368genetic_marker
M47E41A427M47E41A427genetic_marker
M47E41A75M47E41A75genetic_marker
M47E41B131M47E41B131genetic_marker
M47E41B135M47E41B135genetic_marker
M47E41B179M47E41B179genetic_marker
M47E41B262M47E41B262genetic_marker
M47E41B295M47E41B295genetic_marker
M48E38A303M48E38A303genetic_marker
M48E38A305M48E38A305genetic_marker
M48E38A365M48E38A365genetic_marker
M48E38A396M48E38A396genetic_marker
M48E38B115M48E38B115genetic_marker
M48E38B130M48E38B130genetic_marker
M48E38B168M48E38B168genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Lupin-83A:476/P27255-RIL-2010
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1756-1663
eISSN1756-1663
Publication Date2010 Apr
Journal AbbreviationDNA Res.
DOI10.1093/dnares/dsq001
Elocation10.1093/dnares/dsq001
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryEngland
Publication TypeResearch Support, Non-U.S. Gov't
Cross References
This publication is also available in the following databases:
DatabaseAccession
PMID: PubMedPMID:20133394