A reference genome for pea provides insight into legume genome evolution.

Publication Overview
TitleA reference genome for pea provides insight into legume genome evolution.
AuthorsKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J
TypeJournal Article
Journal NameNature genetics
Volume51
Issue9
Year2019
Page(s)1411-1422
CitationKreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Doležel J, Wincker P, Burstin J. A reference genome for pea provides insight into legume genome evolution.. Nature genetics. 2019 Sep; 51(9):1411-1422.

Abstract

We report the first annotated chromosome-level reference genome assembly for pea, Gregor Mendel's original genetic model. Phylogenetics and paleogenomics show genomic rearrangements across legumes and suggest a major role for repetitive elements in pea genome evolution. Compared to other sequenced Leguminosae genomes, the pea genome shows intense gene dynamics, most likely associated with genome size expansion when the Fabeae diverged from its sister tribes. During Pisum evolution, translocation and transposition differentially occurred across lineages. This reference sequence will accelerate our understanding of the molecular basis of agronomically important traits and support crop improvement.

Features
This publication contains information about 64,038 features:
Feature NameUniquenameType
Pisum_contig192720Pisum_contig192720genetic_marker
Pisum_contig146242Pisum_contig146242genetic_marker
Pisum_contig146234Pisum_contig146234genetic_marker
Pisum_contig146232Pisum_contig146232genetic_marker
Pisum_contig146238Pisum_contig146238genetic_marker
Pisum_contig094046Pisum_contig094046genetic_marker
Pisum_contig094049Pisum_contig094049genetic_marker
Pisum_contig146230Pisum_contig146230genetic_marker
Pisum_contig146235Pisum_contig146235genetic_marker
Pisum_contig146237Pisum_contig146237genetic_marker
Pisum_contig146241Pisum_contig146241genetic_marker
Pisum_contig146243Pisum_contig146243genetic_marker
Pisum_contig146247Pisum_contig146247genetic_marker
Pisum_contig094040Pisum_contig094040genetic_marker
Pisum_contig094032Pisum_contig094032genetic_marker
Pisum_contig094033Pisum_contig094033genetic_marker
Pisum_contig094036Pisum_contig094036genetic_marker
Pisum_contig094043Pisum_contig094043genetic_marker
Pisum_contig135555Pisum_contig135555genetic_marker
Pisum_contig135556Pisum_contig135556genetic_marker
Pisum_contig146851Pisum_contig146851genetic_marker
Pisum_contig135552Pisum_contig135552genetic_marker
Pisum_contig102313Pisum_contig102313genetic_marker
Pisum_contig102314Pisum_contig102314genetic_marker
Pisum_contig102317Pisum_contig102317genetic_marker

Pages

Featuremaps
This publication contains information about 1 maps:
Map Name
Pea-Cameor/Melrose-RIL-2019
Stocks
This publication contains information about 2 stocks:
Stock NameUniquenameType
MelroseMelroseaccession
Cameor/Melrose-RILCameor/Melrose-RILpopulation
Properties
Additional details for this publication include:
Property NameValue
Publication ModelPrint-Electronic
ISSN1546-1718
eISSN1546-1718
Publication Date2019 Sep
Journal AbbreviationNat. Genet.
DOI10.1038/s41588-019-0480-1
Elocation10.1038/s41588-019-0480-1
LanguageEnglish
Language Abbreng
Publication TypeJournal Article
Journal CountryUnited States