rna-KK1_036693
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-KK1_036693 vs. DB:Swiss
Match: TF211_SCHPO (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 5.423e-8 Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 1 Query: 4 KSYSDKRRRDLE-FNEGDHVFLKVTPWTGVGRALKSRKLTPRFIGPYQILKRIGEVAYQIALPPSLSNL-HNVFHVSQLRKYVHD 252
K Y D + +++E F GD V +K T G KS KL P F GP+ +L++ G Y++ LP S+ ++ + FHVS L KY H+
Sbjct: 1179 KKYFDMKIQEIEEFQPGDLVMVKRT---KTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRHN 1260
BLAST of rna-KK1_036693 vs. DB:Swiss
Match: TF26_SCHPO (Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-6 PE=3 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 5.528e-8 Identity = 37/97 (38.14%), Postives = 54/97 (55.67%), Query Frame = 1 Query: 4 KSYSDKRRRDLE-FNEGDHVFLKVTPWTGVGRALKSRKLTPRFIGPYQILKRIGEVAYQIALPPSLSNL-HNVFHVSQLRKYVHDP----SHIIESD 276
K Y D + +++E F GD V +K T G KS KL P F GP+ +L++ G Y++ LP S+ ++ + FHVS L KY H+ + I ESD
Sbjct: 1179 KKYFDMKIQEIEEFQPGDLVMVKRT---KTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRHNSELNYATIDESD 1272
BLAST of rna-KK1_036693 vs. DB:Swiss
Match: TF25_SCHPO (Transposon Tf2-5 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-5 PE=3 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 5.528e-8 Identity = 37/97 (38.14%), Postives = 54/97 (55.67%), Query Frame = 1 Query: 4 KSYSDKRRRDLE-FNEGDHVFLKVTPWTGVGRALKSRKLTPRFIGPYQILKRIGEVAYQIALPPSLSNL-HNVFHVSQLRKYVHDP----SHIIESD 276
K Y D + +++E F GD V +K T G KS KL P F GP+ +L++ G Y++ LP S+ ++ + FHVS L KY H+ + I ESD
Sbjct: 1179 KKYFDMKIQEIEEFQPGDLVMVKRT---KTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRHNSELNYATIDESD 1272
BLAST of rna-KK1_036693 vs. DB:Swiss
Match: TF23_SCHPO (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 5.528e-8 Identity = 37/97 (38.14%), Postives = 54/97 (55.67%), Query Frame = 1 Query: 4 KSYSDKRRRDLE-FNEGDHVFLKVTPWTGVGRALKSRKLTPRFIGPYQILKRIGEVAYQIALPPSLSNL-HNVFHVSQLRKYVHDP----SHIIESD 276
K Y D + +++E F GD V +K T G KS KL P F GP+ +L++ G Y++ LP S+ ++ + FHVS L KY H+ + I ESD
Sbjct: 1179 KKYFDMKIQEIEEFQPGDLVMVKRT---KTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRHNSELNYATIDESD 1272
BLAST of rna-KK1_036693 vs. DB:Swiss
Match: TF212_SCHPO (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 5.528e-8 Identity = 37/97 (38.14%), Postives = 54/97 (55.67%), Query Frame = 1 Query: 4 KSYSDKRRRDLE-FNEGDHVFLKVTPWTGVGRALKSRKLTPRFIGPYQILKRIGEVAYQIALPPSLSNL-HNVFHVSQLRKYVHDP----SHIIESD 276
K Y D + +++E F GD V +K T G KS KL P F GP+ +L++ G Y++ LP S+ ++ + FHVS L KY H+ + I ESD
Sbjct: 1179 KKYFDMKIQEIEEFQPGDLVMVKRT---KTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRHNSELNYATIDESD 1272
BLAST of rna-KK1_036693 vs. DB:Swiss
Match: TF29_SCHPO (Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-9 PE=3 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 5.635e-8 Identity = 37/97 (38.14%), Postives = 54/97 (55.67%), Query Frame = 1 Query: 4 KSYSDKRRRDLE-FNEGDHVFLKVTPWTGVGRALKSRKLTPRFIGPYQILKRIGEVAYQIALPPSLSNL-HNVFHVSQLRKYVHDP----SHIIESD 276
K Y D + +++E F GD V +K T G KS KL P F GP+ +L++ G Y++ LP S+ ++ + FHVS L KY H+ + I ESD
Sbjct: 1179 KKYFDMKIQEIEEFQPGDLVMVKRT---KTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRHNSELNYATIDESD 1272
BLAST of rna-KK1_036693 vs. DB:Swiss
Match: TF28_SCHPO (Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-8 PE=3 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 5.635e-8 Identity = 37/97 (38.14%), Postives = 54/97 (55.67%), Query Frame = 1 Query: 4 KSYSDKRRRDLE-FNEGDHVFLKVTPWTGVGRALKSRKLTPRFIGPYQILKRIGEVAYQIALPPSLSNL-HNVFHVSQLRKYVHDP----SHIIESD 276
K Y D + +++E F GD V +K T G KS KL P F GP+ +L++ G Y++ LP S+ ++ + FHVS L KY H+ + I ESD
Sbjct: 1179 KKYFDMKIQEIEEFQPGDLVMVKRT---KTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRHNSELNYATIDESD 1272
BLAST of rna-KK1_036693 vs. DB:Swiss
Match: TF27_SCHPO (Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-7 PE=3 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 5.635e-8 Identity = 37/97 (38.14%), Postives = 54/97 (55.67%), Query Frame = 1 Query: 4 KSYSDKRRRDLE-FNEGDHVFLKVTPWTGVGRALKSRKLTPRFIGPYQILKRIGEVAYQIALPPSLSNL-HNVFHVSQLRKYVHDP----SHIIESD 276
K Y D + +++E F GD V +K T G KS KL P F GP+ +L++ G Y++ LP S+ ++ + FHVS L KY H+ + I ESD
Sbjct: 1179 KKYFDMKIQEIEEFQPGDLVMVKRT---KTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRHNSELNYATIDESD 1272
BLAST of rna-KK1_036693 vs. DB:Swiss
Match: TF24_SCHPO (Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-4 PE=3 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 5.635e-8 Identity = 37/97 (38.14%), Postives = 54/97 (55.67%), Query Frame = 1 Query: 4 KSYSDKRRRDLE-FNEGDHVFLKVTPWTGVGRALKSRKLTPRFIGPYQILKRIGEVAYQIALPPSLSNL-HNVFHVSQLRKYVHDP----SHIIESD 276
K Y D + +++E F GD V +K T G KS KL P F GP+ +L++ G Y++ LP S+ ++ + FHVS L KY H+ + I ESD
Sbjct: 1179 KKYFDMKIQEIEEFQPGDLVMVKRT---KTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRHNSELNYATIDESD 1272
BLAST of rna-KK1_036693 vs. DB:Swiss
Match: TF22_SCHPO (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 5.635e-8 Identity = 37/97 (38.14%), Postives = 54/97 (55.67%), Query Frame = 1 Query: 4 KSYSDKRRRDLE-FNEGDHVFLKVTPWTGVGRALKSRKLTPRFIGPYQILKRIGEVAYQIALPPSLSNL-HNVFHVSQLRKYVHDP----SHIIESD 276
K Y D + +++E F GD V +K T G KS KL P F GP+ +L++ G Y++ LP S+ ++ + FHVS L KY H+ + I ESD
Sbjct: 1179 KKYFDMKIQEIEEFQPGDLVMVKRT---KTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKYRHNSELNYATIDESD 1272 The following BLAST results are available for this feature:
BLAST of rna-KK1_036693 vs. DB:Swiss
Analysis Date: 2019-10-17 (BLAST: C. cajan Asha genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-KK1_036693_Cc_Asha_v1.0 ID=rna-KK1_036693_Cc_Asha_v1.0; Name=rna-KK1_036693; organism=Cajanus cajan; type=mRNA; length=465bpback to top protein sequence of rna-KK1_036693_Cc_Asha_v1.0 >rna-KK1_036693_Cc_Asha_v1.0 ID=rna-KK1_036693_Cc_Asha_v1.0; Name=rna-KK1_036693_Cc_Asha_v1.0; organism=Cajanus cajan; type=polypeptide; length=154bpback to top mRNA from alignment at Scaffold128880-KQ483745.1:169742..170206+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-KK1_036693_Cc_Asha_v1.0 ID=rna-KK1_036693_Cc_Asha_v1.0; Name=rna-KK1_036693; organism=Cajanus cajan; type=mRNA; length=465bp; location=Sequence derived from: Scaffold128880-KQ483745.1:169742..170206+ (Cajanus cajanback to top Coding sequence (CDS) from alignment at Scaffold128880-KQ483745.1:169742..170206+ >rna-KK1_036693_Cc_Asha_v1.0 ID=rna-KK1_036693_Cc_Asha_v1.0; Name=rna-KK1_036693; organism=Cajanus cajan; type=CDS; length=930bp; location=Sequence derived from: Scaffold128880-KQ483745.1:169742..170206+ (Cajanus cajanback to top |