Vigun01g036000.1

Transcript Overview
NameVigun01g036000.1
Unique NameVigun01g036000.1_Vu_IT97K-499-35_v1.1
TypemRNA
OrganismVigna unguiculata (cowpea)
Sequence length444
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Vu01supercontigVu01:4653002..4653618 +Vigna unguiculata L. Walp IT97K-499-35 genome v1.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-15
InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.12019-10-17
BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot2019-10-17
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
vuvuR000Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
psvuL388Pisum sativum Cameor genome v1aPisum sativum
crvuL227Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
pvvuL008Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvvuL468Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
cavuL166Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccvuL0324Cajanus cajan Asha genome v1.0Cajanus cajan
asvuL572Vigna angularis Jingnong 6 genome v1.1Vigna angularis
vuzwsR025Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
vuzwsR040Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
tifvuL219Vicia faba cv. Tiffany genome v1.0Vicia faba
vfhvuL193Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
vrvvuL322Vigna radiata cv. VC1973A genome v6.0Vigna radiata
vssvuL617Vicia sativa cv. Studenica genome v1.0Vicia sativa
vuvuaR001Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
canvuL145Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjvuL341Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjvuL497Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carvuL162Cicer arietinum
carvuL340Cicer arietinum
ccavuL074Cajanus cajan cv. Asha genome v2.0Cajanus cajan
vuvumR039Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvumR053Vigna umbellata FF25 genome v1.0Vigna umbellata
vuvvaR019Vicia villosa cv. AU Merit genome v1.0Vicia villosa
vstvuL310Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vstvuL490Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
vasvuL328Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vasvuL501Vigna angularis cv. Shumari genome v1.a1Vigna angularis
vuvunR000Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
vuvunR002Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Vigun01g036000Vigun01g036000_Vu_IT97K-499-35_v1.1Vigna unguiculatagene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g036000.1Vigun01g036000.1_Vu_IT97K-499-35_v1.1-proteinVigna unguiculatapolypeptide
Vigun01g036000.1_Vu_IT97K-499-35_v1.1Vigun01g036000.1_Vu_IT97K-499-35_v1.1Vigna unguiculatapolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Vigun01g036000.1.v1.1.CDS.1Vigun01g036000.1.v1.1.CDS.1_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS
Vigun01g036000.1.v1.1.CDS.2Vigun01g036000.1.v1.1.CDS.2_Vu_IT97K-499-35_v1.1Vigna unguiculataCDS


Homology
The following BLAST results are available for this feature:
BLAST of Vigun01g036000.1 vs.
Analysis Date: 2019-10-17 (BLAST: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Vigna unguiculata L. Walp IT97K-499-35 genome v1.1
Date Performed: 2019-10-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016140Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domainPFAMPF14368LTP_2coord: 37..103
e-value: 3.5E-9
score: 36.7
NoneNo IPR availableGENE3D1.10.110.10coord: 27..100
e-value: 6.0E-12
score: 47.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..147
NoneNo IPR availableCDDcd04660nsLTP_likecoord: 30..103
e-value: 3.55303E-12
score: 56.2234
IPR036312Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamilySUPERFAMILY47699Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumincoord: 30..100

Sequences
The following sequences are available for this feature:

mRNA sequence

>Vigun01g036000.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g036000.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g036000.1; organism=Vigna unguiculata; type=mRNA; length=444bp
ATGGAAAGCACGATGAGAAGCAAGTGCGTAATGATCTTGGGGATGGTTGG
AGTTATAGTGTTATGTGGTGATGTTGTTGTAGGGCAGTGCTCTGGCATGG
GAGGGCTCATAAAGGAATGTGGGGTGTATGTTAAAAGGTCTGGTCCTCAG
ATGAATCCCTCAAGAAAGTGCTGTGAAGAGATAAAGAATGCAGATGTTGC
ATGCGTGTGTAACCACTTAACCAACCATATGCTTCAGCTTATTGATATCC
AGAAGCTGCATAATGTTGCAGATTCATGTGGAAGACCAATACCCTCTGGA
ACCAAGTGTGGAGGTATTATATCTAATAAGGAGAAAACCGATTCCAACTC
ATCTACTCAAACTTCTGCACCCATTATACCTACAGCCGATACCAACTCAT
CTACTCCATTCACGGAAGGTCCCTCCAGTTTCACCATCTCATAG
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protein sequence of Vigun01g036000.1_Vu_IT97K-499-35_v1.1

>Vigun01g036000.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g036000.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g036000.1_Vu_IT97K-499-35_v1.1; organism=Vigna unguiculata; type=polypeptide; length=148bp
MESTMRSKCVMILGMVGVIVLCGDVVVGQCSGMGGLIKECGVYVKRSGPQ
MNPSRKCCEEIKNADVACVCNHLTNHMLQLIDIQKLHNVADSCGRPIPSG
TKCGGIISNKEKTDSNSSTQTSAPIIPTADTNSSTPFTEGPSSFTIS*
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mRNA from alignment at Vu01:4653002..4653618+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Vigun01g036000.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g036000.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g036000.1; organism=Vigna unguiculata; type=mRNA; length=617bp; location=Sequence derived from: Vu01:4653002..4653618+ (Vigna unguiculata
ATGGAAAGCACGATGAGAAGCAAGTGCGTAATGATCTTGGGGATGGTTGG
AGTTATAGTGTTATGTGGTGATGTTGTTGTAGGGCAGTGCTCTGGCATGG
GAGGGCTCATAAAGGAATGTGGGGTGTATGTTAAAAGGTCTGGTCCTCAG
ATGAATCCCTCAAGAAAGTGCTGTGAAGAGATAAAGAATGCAGATGTTGC
ATGCGTGTGTAACCACTTAACCAACCATATGCTTCAGCTTATTGATATCC
AGAAGCTGCATAATGTTGCAGATTCATGTGGAAGACCAATACCCTCTGGA
ACCAAGTGTGGAGGTATTATATGTATATAGAATTGAAAATATGTTTTTGG
TTTCGATCTCATCTTAGTTTATGTTTTGGATTAGATGAAGTTGCAGCTGG
ACCTAAATCTGGTGATGTCATCAACTCGCCTCCACAACATATCGAATCCC
AAGTTCCACCTAAGCAGAAAACCGATTCCAACTTTCAAGTTTCAGCTAAT
AAGGAGAAAACCGATTCCAACTCATCTACTCAAACTTCTGCACCCATTAT
ACCTACAGCCGATACCAACTCATCTACTCCATTCACGGAAGGTCCCTCCA
GTTTCACCATCTCATAG
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Coding sequence (CDS) from alignment at Vu01:4653002..4653618+

>Vigun01g036000.1_Vu_IT97K-499-35_v1.1 ID=Vigun01g036000.1_Vu_IT97K-499-35_v1.1; Name=Vigun01g036000.1; organism=Vigna unguiculata; type=CDS; length=444bp; location=Sequence derived from: Vu01:4653002..4653618+ (Vigna unguiculata
ATGGAAAGCACGATGAGAAGCAAGTGCGTAATGATCTTGGGGATGGTTGG
AGTTATAGTGTTATGTGGTGATGTTGTTGTAGGGCAGTGCTCTGGCATGG
GAGGGCTCATAAAGGAATGTGGGGTGTATGTTAAAAGGTCTGGTCCTCAG
ATGAATCCCTCAAGAAAGTGCTGTGAAGAGATAAAGAATGCAGATGTTGC
ATGCGTGTGTAACCACTTAACCAACCATATGCTTCAGCTTATTGATATCC
AGAAGCTGCATAATGTTGCAGATTCATGTGGAAGACCAATACCCTCTGGA
ACCAAGTGTGGAGGTATTATATCTAATAAGGAGAAAACCGATTCCAACTC
ATCTACTCAAACTTCTGCACCCATTATACCTACAGCCGATACCAACTCAT
CTACTCCATTCACGGAAGGTCCCTCCAGTTTCACCATCTCATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR016140Bifunc_inhib/LTP/seed_store
IPR036312Bifun_inhib/LTP/seed_sf