Phvul.006G080000.2
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.006G080000.2 vs. DB:Swiss
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum OX=4081 GN=PTI6 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 4.285e-23 Identity = 68/116 (58.62%), Postives = 76/116 (65.52%), Query Frame = 1 Query: 385 RNKFRGVRQRPWGRWTAEIRDPIQRKRVWLGTFYTXXXXXXXXXXXXXKLKGPDAVTNFPQVATVKRELKVSPPEATCSGEGFS--------SPTSVLAFCDGDSTPFDGFRYDEV 708 R KFRGVRQRPWGRW AEIRDP + KRVWLGT+ T EEAA VYD+AAVKLKGPDAVTNFP T + + V+ E +G SPTSVL CD D PFD + EV Sbjct: 95 RKKFRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTAEVTVTVTETETESVADGGDKSENDVALSPTSVL--CDNDFAPFDNLGFCEV 208
BLAST of Phvul.006G080000.2 vs. DB:Swiss
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana OX=3702 GN=CRF4 PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 4.181e-21 Identity = 57/100 (57.00%), Postives = 71/100 (71.00%), Query Frame = 1 Query: 391 KFRGVRQRPWGRWTAEIRDPIQRKRVWLGTFYTXXXXXXXXXXXXXKLKGPDAVTNF---PQVATVKRE-------LKVSPPEATCSGEGFSSPTSVLAF 660 K+RGVRQRPWG+W AEIRDP QR+R+WLGTF TAEEAA VYD AA+KL+GPDA+TNF P+ V+ + + VS E+ + SSPTSVL + Sbjct: 117 KYRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQPEPEPVQEQEQEPESNMSVSISESMDDSQHLSSPTSVLNY 216
BLAST of Phvul.006G080000.2 vs. DB:Swiss
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana OX=3702 GN=CRF3 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.536e-17 Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1 Query: 391 KFRGVRQRPWGRWTAEIRDPIQRKRVWLGTFYTXXXXXXXXXXXXXKLKGPDAVTNF 561 KFRGVRQRPWG+W AEIRDP QR+R+WLGTF TAEEAA VYD AA++L+GPDA+TNF Sbjct: 124 KFRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNF 180
BLAST of Phvul.006G080000.2 vs. DB:Swiss
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana OX=3702 GN=CRF1 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.250e-17 Identity = 57/106 (53.77%), Postives = 65/106 (61.32%), Query Frame = 1 Query: 391 KFRGVRQRPWGRWTAEIRDPIQRKRVWLGTFYTXXXXXXXXXXXXXKLKGPDAVTNFP------QVATVKRELKVSPPEATCSGEGFSSPTSVLAFCDGDSTPFDG 690 KFRGVRQRPWG+W AEIRDP +R RVWLGTF TAEEAA VYD AA++L+GP+A NFP V E+K GE SP SVL +PF G Sbjct: 86 KFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFPPPPVTENVEEASTEVKGVSDFIIGGGECLRSPVSVL------ESPFSG 185
BLAST of Phvul.006G080000.2 vs. DB:Swiss
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana OX=3702 GN=CRF2 PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.107e-16 Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1 Query: 391 KFRGVRQRPWGRWTAEIRDPIQRKRVWLGTFYTXXXXXXXXXXXXXKLKGPDAVTNFPQVATVKRE 588 KFRGVRQRPWG+W AEIRDP++R R+WLGT+ TAEEAA VYD AA++L+GPDA+TNF T E Sbjct: 121 KFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSVTPTTATE 186
BLAST of Phvul.006G080000.2 vs. DB:Swiss
Match: CRF5_ARATH (Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana OX=3702 GN=CRF5 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.434e-14 Identity = 52/110 (47.27%), Postives = 63/110 (57.27%), Query Frame = 1 Query: 391 KFRGVRQRPWGRWTAEIRDPIQRKRVWLGTFYTXXXXXXXXXXXXXKLKGPDAVTNF------------PQVATVKRELKVSPPEATCSGEGFSSPTSVLAFCDGDSTPF 684 K+RGVRQRPWG++ AEIRDP R R+WLGTF TAEEAA YD AA+++KG +A TNF P+ + E A S SPTSVL F D T + Sbjct: 98 KYRGVRQRPWGKFAAEIRDPSSRTRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNFLTPPPSPTTEVLPETPVIDLETVSGCDSARESQISLCSPTSVLRFSHNDETEY 207
BLAST of Phvul.006G080000.2 vs. DB:Swiss
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana OX=3702 GN=CRF6 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.634e-14 Identity = 52/100 (52.00%), Postives = 62/100 (62.00%), Query Frame = 1 Query: 391 KFRGVRQRPWGRWTAEIRDPIQRKRVWLGTFYTXXXXXXXXXXXXXKLKGPDAVTNFPQVATVKRELKVSPPEATCSG----EGFSSPTSVLAFCDGDST 678 K+RGVRQRPWG++ AEIRDP R R+WLGTF TAEEAA YD AA+ LKGP A+TNF T + + A G + SPTSVL F + T Sbjct: 104 KYRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTPPTPTPVIDLQTVSACDYGRDSRQSLHSPTSVLRFNVNEET 203
BLAST of Phvul.006G080000.2 vs. DB:Swiss
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana OX=3702 GN=ERF10 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.724e-14 Identity = 37/61 (60.66%), Postives = 49/61 (80.33%), Query Frame = 1 Query: 391 KFRGVRQRPWGRWTAEIRDPIQRKRVWLGTFYTXXXXXXXXXXXXXKLKGPDAVTNFPQVA 573 ++RGVR+RPWGR+ AEIRDP+++KRVWLG+F T EEAA YD AA++ +G A TNFP + Sbjct: 52 RYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFPLIG 112
BLAST of Phvul.006G080000.2 vs. DB:Swiss
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana OX=3702 GN=ERF073 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.662e-14 Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = 1 Query: 391 KFRGVRQRPWGRWTAEIRDPIQRKRVWLGTFYTXXXXXXXXXXXXXKLKGPDAVTNFPQVATVKRELKV 597 +++G+R+RPWGRW AEIRDPI+ RVWLGTF TAEEAA YD A +++G A NFP ++ KR+ K Sbjct: 24 RYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNESSGKRKAKA 92
BLAST of Phvul.006G080000.2 vs. DB:Swiss
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana OX=3702 GN=ERF071 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 8.156e-14 Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 1 Query: 358 EKRPAAPRCRNKFRGVRQRPWGRWTAEIRDPIQRKRVWLGTFYTXXXXXXXXXXXXXKLKGPDAVTNFPQVATVKRELKVSP 603 E+R +N +RG+RQRPWG+W AEIRDP + RVWLGTF TA+EAA YD AA+K++G A NFP V+ E P Sbjct: 38 EERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFPNT-QVEEEADTKP 118 The following BLAST results are available for this feature:
BLAST of Phvul.006G080000.2 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.006G080000.2_Pv_G19833_v2.1 >Phvul.006G080000.2_Pv_G19833_v2.1 ID=Phvul.006G080000.2_Pv_G19833_v2.1; Name=Phvul.006G080000.2_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=240bpback to top mRNA from alignment at Chr06:19194544..19195813- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.006G080000.2_Pv_G19833_v2.1 ID=Phvul.006G080000.2_Pv_G19833_v2.1; Name=Phvul.006G080000.2; organism=Phaseolus vulgaris; type=mRNA; length=1270bp; location=Sequence derived from: Chr06:19194544..19195813- (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr06:19194544..19195813- >Phvul.006G080000.2_Pv_G19833_v2.1 ID=Phvul.006G080000.2_Pv_G19833_v2.1; Name=Phvul.006G080000.2; organism=Phaseolus vulgaris; type=CDS; length=720bp; location=Sequence derived from: Chr06:19194544..19195813- (Phaseolus vulgarisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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