rna-TanjilR_31213

Transcript Overview
Namerna-TanjilR_31213
Unique Namerna-TanjilR_31213_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length249
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG05-CM007365.1supercontigChr_LG05-CM007365.1:7403905..7404153 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL170Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL439Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR1048Cicer arietinum ICC 4958 genome v2Cicer arietinum
anpsR0760Pisum sativum Cameor genome v1aPisum sativum
anpvR0997Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR1049Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0864Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0905Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0998Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0846Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0894Vicia faba cv. Tiffany genome v1.0Vicia faba
antifR0902Vicia faba cv. Tiffany genome v1.0Vicia faba
anvuaR0823Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0862Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR1008Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1021Vicia sativa cv. Studenica genome v1.0Vicia sativa
anavjR0976Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0860Cicer arietinum
ancarR0871Cicer arietinum
anccaR0876Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0878Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0881Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR1000Vigna umbellata FF25 genome v1.0Vigna umbellata
anvasR1007Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR1027Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvunR0829Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0869Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_31213gene-TanjilG_31213_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_31213rna-TanjilR_31213_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_31213_La_Tanjil_v1.0rna-TanjilR_31213_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_31213_La_Tanjil_v1.0-exon-Chr_LG05-CM007365.1_La_Tanjil_v1.0-1579734366:7403905..7404153rna-TanjilR_31213_La_Tanjil_v1.0-exon-Chr_LG05-CM007365.1_La_Tanjil_v1.0-1579734366:7403905..7404153Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_31213_La_Tanjil_v1.0-CDS-Chr_LG05-CM007365.1_La_Tanjil_v1.0-1579734366:7403905..7404153rna-TanjilR_31213_La_Tanjil_v1.0-CDS-Chr_LG05-CM007365.1_La_Tanjil_v1.0-1579734366:7403905..7404153Lupinus angustifoliusCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_31213 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_31213_La_Tanjil_v1.0 ID=rna-TanjilR_31213_La_Tanjil_v1.0; Name=rna-TanjilR_31213; organism=Lupinus angustifolius; type=mRNA; length=249bp
ATGGGAGGTAATAAGCATAGGAAGTCTTCTCCAAGTTTCTTCTCAATTTT
CAACATCTTCTCATCTAAGAAGTCTAGATCAGTGCAATATGATTCATATG
ATTCTGACCCCAAGGTTTGGCCTAGTGATTATGACAGAGATCAATGGGGT
GTTGCAGAATCTGATATTGATAGGAAAGCTGAAGCTTTCATTCTTAAGTG
TTCAGAATCTGAACACTTTCAACTTGACCCTGCTGCAGGAATTGCATAA
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protein sequence of rna-TanjilR_31213_La_Tanjil_v1.0

>rna-TanjilR_31213_La_Tanjil_v1.0 ID=rna-TanjilR_31213_La_Tanjil_v1.0; Name=rna-TanjilR_31213_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=82bp
MGGNKHRKSSPSFFSIFNIFSSKKSRSVQYDSYDSDPKVWPSDYDRDQWG
VAESDIDRKAEAFILKCSESEHFQLDPAAGIA
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mRNA from alignment at Chr_LG05-CM007365.1:7403905..7404153+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_31213_La_Tanjil_v1.0 ID=rna-TanjilR_31213_La_Tanjil_v1.0; Name=rna-TanjilR_31213; organism=Lupinus angustifolius; type=mRNA; length=249bp; location=Sequence derived from: Chr_LG05-CM007365.1:7403905..7404153+ (Lupinus angustifolius
ATGGGAGGTAATAAGCATAGGAAGTCTTCTCCAAGTTTCTTCTCAATTTT
CAACATCTTCTCATCTAAGAAGTCTAGATCAGTGCAATATGATTCATATG
ATTCTGACCCCAAGGTTTGGCCTAGTGATTATGACAGAGATCAATGGGGT
GTTGCAGAATCTGATATTGATAGGAAAGCTGAAGCTTTCATTCTTAAGTG
TTCAGAATCTGAACACTTTCAACTTGACCCTGCTGCAGGAATTGCATAA
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Coding sequence (CDS) from alignment at Chr_LG05-CM007365.1:7403905..7404153+

>rna-TanjilR_31213_La_Tanjil_v1.0 ID=rna-TanjilR_31213_La_Tanjil_v1.0; Name=rna-TanjilR_31213; organism=Lupinus angustifolius; type=CDS; length=249bp; location=Sequence derived from: Chr_LG05-CM007365.1:7403905..7404153+ (Lupinus angustifolius
ATGGGAGGTAATAAGCATAGGAAGTCTTCTCCAAGTTTCTTCTCAATTTT
CAACATCTTCTCATCTAAGAAGTCTAGATCAGTGCAATATGATTCATATG
ATTCTGACCCCAAGGTTTGGCCTAGTGATTATGACAGAGATCAATGGGGT
GTTGCAGAATCTGATATTGATAGGAAAGCTGAAGCTTTCATTCTTAAGTG
TTCAGAATCTGAACACTTTCAACTTGACCCTGCTGCAGGAATTGCATAA
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