rna-TanjilR_13884
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_13884 vs. DB:Swiss
Match: VATL_GOSHI (V-type proton ATPase 16 kDa proteolipid subunit OS=Gossypium hirsutum OX=3635 GN=CVA16-2 PE=2 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.521e-38 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 2 Query: 158 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 442
MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR
Sbjct: 28 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 122 HSP 2 Score: 62.3882 bits (150), Expect = 4.482e-10 Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 3 Query: 1818 VRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 1952
VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA+
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165
BLAST of rna-TanjilR_13884 vs. DB:Swiss
Match: VATL2_ARATH (V-type proton ATPase subunit c2 OS=Arabidopsis thaliana OX=3702 GN=VHA-c2 PE=2 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.665e-38 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 2 Query: 158 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 442
MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR
Sbjct: 28 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 122 HSP 2 Score: 62.3882 bits (150), Expect = 4.397e-10 Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 3 Query: 1818 VRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 1952
VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA+
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165
BLAST of rna-TanjilR_13884 vs. DB:Swiss
Match: VATL4_ARATH (V-type proton ATPase subunit c4 OS=Arabidopsis thaliana OX=3702 GN=VHA-c4 PE=2 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.665e-38 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 2 Query: 158 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 442
MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR
Sbjct: 29 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 123 HSP 2 Score: 62.3882 bits (150), Expect = 4.801e-10 Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 3 Query: 1818 VRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 1952
VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA+
Sbjct: 122 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 166
BLAST of rna-TanjilR_13884 vs. DB:Swiss
Match: VATL_KALDA (V-type proton ATPase 16 kDa proteolipid subunit OS=Kalanchoe daigremontiana OX=23013 PE=2 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.733e-38 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 2 Query: 158 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 442
MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR
Sbjct: 28 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 122 HSP 2 Score: 64.3142 bits (155), Expect = 1.126e-10 Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 3 Query: 1818 VRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 1952
VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
BLAST of rna-TanjilR_13884 vs. DB:Swiss
Match: VATL_VIGRR (V-type proton ATPase 16 kDa proteolipid subunit OS=Vigna radiata var. radiata OX=3916 PE=2 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.878e-38 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 2 Query: 158 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 442
MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR
Sbjct: 27 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121 HSP 2 Score: 64.3142 bits (155), Expect = 1.103e-10 Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 3 Query: 1818 VRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 1952
VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD
Sbjct: 120 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 164
BLAST of rna-TanjilR_13884 vs. DB:Swiss
Match: VATL5_ARATH (V-type proton ATPase subunit c5 OS=Arabidopsis thaliana OX=3702 GN=VHA-c5 PE=2 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.935e-38 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 2 Query: 158 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 442
MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR
Sbjct: 27 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121 HSP 2 Score: 62.3882 bits (150), Expect = 4.265e-10 Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 3 Query: 1818 VRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 1952
VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA+
Sbjct: 120 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164
BLAST of rna-TanjilR_13884 vs. DB:Swiss
Match: VATL3_ARATH (V-type proton ATPase subunit c3 OS=Arabidopsis thaliana OX=3702 GN=VHA-c3 PE=1 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.935e-38 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 2 Query: 158 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 442
MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR
Sbjct: 27 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121 HSP 2 Score: 62.3882 bits (150), Expect = 4.265e-10 Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 3 Query: 1818 VRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 1952
VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA+
Sbjct: 120 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164
BLAST of rna-TanjilR_13884 vs. DB:Swiss
Match: VATL1_ARATH (V-type proton ATPase subunit c1 OS=Arabidopsis thaliana OX=3702 GN=VHA-c1 PE=2 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.935e-38 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 2 Query: 158 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 442
MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR
Sbjct: 27 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 121 HSP 2 Score: 62.3882 bits (150), Expect = 4.265e-10 Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 3 Query: 1818 VRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 1952
VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRA+
Sbjct: 120 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164
BLAST of rna-TanjilR_13884 vs. DB:Swiss
Match: VATL_MESCR (V-type proton ATPase 16 kDa proteolipid subunit OS=Mesembryanthemum crystallinum OX=3544 GN=VMAC1 PE=2 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 2.118e-38 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 2 Query: 158 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 442
MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR
Sbjct: 28 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 122 HSP 2 Score: 63.929 bits (154), Expect = 1.148e-10 Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 3 Query: 1818 VRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 1952
VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
BLAST of rna-TanjilR_13884 vs. DB:Swiss
Match: VATL_BETVU (V-type proton ATPase 16 kDa proteolipid subunit OS=Beta vulgaris OX=161934 GN=VMAC1 PE=2 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 2.118e-38 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 2 Query: 158 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVR 442
MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR
Sbjct: 28 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVR 122 HSP 2 Score: 63.929 bits (154), Expect = 1.148e-10 Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 3 Query: 1818 VRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 1952
VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD
Sbjct: 121 VRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_13884 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_13884_La_Tanjil_v1.0 ID=rna-TanjilR_13884_La_Tanjil_v1.0; Name=rna-TanjilR_13884; organism=Lupinus angustifolius; type=mRNA; length=1955bpback to top protein sequence of rna-TanjilR_13884_La_Tanjil_v1.0 >rna-TanjilR_13884_La_Tanjil_v1.0 ID=rna-TanjilR_13884_La_Tanjil_v1.0; Name=rna-TanjilR_13884_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=164bpback to top mRNA from alignment at Chr_LG09-CM007369.1:17967197..17969151- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_13884_La_Tanjil_v1.0 ID=rna-TanjilR_13884_La_Tanjil_v1.0; Name=rna-TanjilR_13884; organism=Lupinus angustifolius; type=mRNA; length=1955bp; location=Sequence derived from: Chr_LG09-CM007369.1:17967197..17969151- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG09-CM007369.1:17967197..17969151- >rna-TanjilR_13884_La_Tanjil_v1.0 ID=rna-TanjilR_13884_La_Tanjil_v1.0; Name=rna-TanjilR_13884; organism=Lupinus angustifolius; type=CDS; length=495bp; location=Sequence derived from: Chr_LG09-CM007369.1:17967197..17969151- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|