rna-TanjilR_01635

Transcript Overview


Name	rna-TanjilR_01635
Unique Name	rna-TanjilR_01635_La_Tanjil_v1.0
Type	mRNA
Organism	Lupinus angustifolius (blue lupin)
Sequence length	1230
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_LG09-CM007369.1	supercontig	Chr_LG09-CM007369.1:18532573..18533802 +	Lupinus angustifolius L. Tanjil genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Lupinus angustifolius L. Tanjil genome v1.0	2019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.0	2020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot	2020-01-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ananL183	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL310	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL467	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaiR1378	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaiR1406	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
anccR1489	Cajanus cajan Asha genome v1.0	Cajanus cajan
anccR1499	Cajanus cajan Asha genome v1.0	Cajanus cajan
anccR1520	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancaR1176	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR1212	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancrR1389	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
anpsR0994	Pisum sativum Cameor genome v1a	Pisum sativum
anpsR1019	Pisum sativum Cameor genome v1a	Pisum sativum
anpvR1404	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR1417	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anvuR1204	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR1209	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anasR1330	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR1358	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anzwsR1133	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anzwsR1164	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anvfhR1199	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
antifR1185	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR1216	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
antifR1202	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvrvR1153	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvrvR1164	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvuaR1158	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvuaR1163	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvssR1322	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvssR1342	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
ancanR1064	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR1102	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
anavjR1300	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR1322	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
ancarR1131		Cicer arietinum
ancarR1164		Cicer arietinum
anccaR1149	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR1162	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anvumR1323	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR1326	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvvaR1236	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvvaR1272	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvasR1323	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR1317	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvstR1320	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR1326	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvasR1330	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvunR1165	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anvunR1172	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR1448	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anpvfR1460	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris

Orthologs


Gene/Transcript	Assembly	Species
Vigan.02G121600.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
rna-XM_014644874.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Vum_02G00999.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
rna-XM_014648272.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Vigun09g175600.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Phvul.009G030100.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Vum_03G01201.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
Vigun09g175600.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
LR48_mrnaVigan07g149800	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Phvul.008G172700.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
rna-KK1_005145	Cajanus cajan Asha genome v1.0	Cajanus cajan
rna-KK1_025219	Cajanus cajan Asha genome v1.0	Cajanus cajan
Vigun08g099000.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Psat02G0228700-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
Vigst.02G093300.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
Vigun08g099000.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
Vigan.03G169700.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
evm.model.Chr09.1937	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Cc_v2.0_06613.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
LR48_mrnaVigan04g189400	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Vfaba.Tiffany.R1.1g165480.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Va04G057550.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
evm.model.Chr08.1864	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Vfaba.Hedin2.R1.1g211640.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Cc_v2.0_11672.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
XM_058890286.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
Vigst.03G108400.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
Va07G043350.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Psat2g073160.1	Pisum sativum Cameor genome v1a	Pisum sativum

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
rna-TanjilR_02798	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
rna-TanjilR_04981	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-TanjilG_01635	gene-TanjilG_01635_La_Tanjil_v1.0	Lupinus angustifolius	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_01635	rna-TanjilR_01635_La_Tanjil_v1.0-protein	Lupinus angustifolius	polypeptide
rna-TanjilR_01635_La_Tanjil_v1.0	rna-TanjilR_01635_La_Tanjil_v1.0	Lupinus angustifolius	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_01635_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18532573..18533802	rna-TanjilR_01635_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18532573..18533802	Lupinus angustifolius	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_01635_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18532573..18533802	rna-TanjilR_01635_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18532573..18533802	Lupinus angustifolius	CDS

Homology

The following BLAST results are available for this feature:

BLAST of rna-TanjilR_01635 vs.

BLAST of rna-TanjilR_01635 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 157..183 e-value: 2.1E-12 score: 46.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..159

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_LG09-CM007369.1:18532573..18533802+
coding sequence from alignment at Chr_LG09-CM007369.1:18532573..18533802+

mRNA sequence

>rna-TanjilR_01635_La_Tanjil_v1.0 ID=rna-TanjilR_01635_La_Tanjil_v1.0; Name=rna-TanjilR_01635; organism=Lupinus angustifolius; type=mRNA; length=1230bp
ATGGATTCTGGTAATAGTGGAAGTGTCTCTTCTAGTGgtgatgaggaata
tgattcacGAGTTGATCACACAACACTACTCCCTTCAAATATCCTCAATC
ATCCTCTCACCCAATTTGCTAAATCTTCATCTTTTGTTTCTTCTCATCAA
CACCAAATCCATCATAACAATCCATCTTTGTTTGATCTTTCATCTAGTTA
CCTCCACTCTCTTTCTCAACCCCATCCAAACACAAATCCAAACTCTTTTC
TAAATTTGGATACTGCTACTAATTCTATATCTCAAGGAAAAAGATCTGAA
CCCAATTGCACCCACCCTTCAAACCTACAAGGTTTTAATCAAGGATCGTT
TCCACCACCTCATGGTTTTGGACATGATGACAATAACAATGCAAGGTTGG
TTTCATCAGCACCTACCAATAATGCAGCAGCGCGAAACTCAAAGAAGAGA
ACTAGAGCTTCTAGAAGAACACCTACCACGGTTCTCACCACCGACACCTC
AAATTTCAGGGCCATGGTTCAAGAATTCACTGGCATCCCTGCACCACCCT
TTTCAGGCACATCATCTTATTCTCGTACTCGCAGGCTTGACCTTCTCACC
GGTTCCTCCTCTTCCTTAAGGGCCACTTCCTCTCATCACTTGGACACAAT
ACCCTCTTTTTACCCTTTGCGTCCTTCACATCAAAAACTTCATCATCAAC
AAAACCCTTTTCCTTCAACTTTGTTgcatactaataataataacatggtT
GATGCTATAGCTTCTTCAATTaccaacaacaataacaactcCATTAACTA
CCAACTACCACCTGATCTGGGTCTACCCTATCACCACCACAACCAATCAC
ACAACGTCATGCTAAGCATGCAACAAAATCACCCTATTTCaacatttcat
caaacacccGCCCTTCATCCTTTAGGAAGCCATGGCTTTTCAGTGTTTGG
TGCAAAGTCTCAAGCAAGTTTATCAGTACAGTCACTGGATGAACTTGGTA
TGAGTAATAATAATGCTGATCTTGTTGGTGCTTATGGAGTACTATCAGGA
CCCCAAGGTCATGGCCATGTAAGTTCTGGTCATGGAAATGGAGATAGAAG
AGAGCTGAACTTGTCAACACCTTCTGCTGCATCAAGAATATTGGACCATG
AAAAGAATTTGGAGAATAATAGCAGTACTATCAATAGAGGAGAAGGTAAC
GTTGATTCGTGGATTTGTTCATCTGATTAG

protein sequence of rna-TanjilR_01635_La_Tanjil_v1.0

>rna-TanjilR_01635_La_Tanjil_v1.0 ID=rna-TanjilR_01635_La_Tanjil_v1.0; Name=rna-TanjilR_01635_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=409bp
MDSGNSGSVSSSGDEEYDSRVDHTTLLPSNILNHPLTQFAKSSSFVSSHQ
HQIHHNNPSLFDLSSSYLHSLSQPHPNTNPNSFLNLDTATNSISQGKRSE
PNCTHPSNLQGFNQGSFPPPHGFGHDDNNNARLVSSAPTNNAAARNSKKR
TRASRRTPTTVLTTDTSNFRAMVQEFTGIPAPPFSGTSSYSRTRRLDLLT
GSSSSLRATSSHHLDTIPSFYPLRPSHQKLHHQQNPFPSTLLHTNNNNMV
DAIASSITNNNNNSINYQLPPDLGLPYHHHNQSHNVMLSMQQNHPISTFH
QTPALHPLGSHGFSVFGAKSQASLSVQSLDELGMSNNNADLVGAYGVLSG
PQGHGHVSSGHGNGDRRELNLSTPSAASRILDHEKNLENNSSTINRGEGN
VDSWICSSD

mRNA from alignment at Chr_LG09-CM007369.1:18532573..18533802+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-TanjilR_01635_La_Tanjil_v1.0 ID=rna-TanjilR_01635_La_Tanjil_v1.0; Name=rna-TanjilR_01635; organism=Lupinus angustifolius; type=mRNA; length=1230bp; location=Sequence derived from: Chr_LG09-CM007369.1:18532573..18533802+ (Lupinus angustifolius
ATGGATTCTGGTAATAGTGGAAGTGTCTCTTCTAGTGgtgatgaggaata
tgattcacGAGTTGATCACACAACACTACTCCCTTCAAATATCCTCAATC
ATCCTCTCACCCAATTTGCTAAATCTTCATCTTTTGTTTCTTCTCATCAA
CACCAAATCCATCATAACAATCCATCTTTGTTTGATCTTTCATCTAGTTA
CCTCCACTCTCTTTCTCAACCCCATCCAAACACAAATCCAAACTCTTTTC
TAAATTTGGATACTGCTACTAATTCTATATCTCAAGGAAAAAGATCTGAA
CCCAATTGCACCCACCCTTCAAACCTACAAGGTTTTAATCAAGGATCGTT
TCCACCACCTCATGGTTTTGGACATGATGACAATAACAATGCAAGGTTGG
TTTCATCAGCACCTACCAATAATGCAGCAGCGCGAAACTCAAAGAAGAGA
ACTAGAGCTTCTAGAAGAACACCTACCACGGTTCTCACCACCGACACCTC
AAATTTCAGGGCCATGGTTCAAGAATTCACTGGCATCCCTGCACCACCCT
TTTCAGGCACATCATCTTATTCTCGTACTCGCAGGCTTGACCTTCTCACC
GGTTCCTCCTCTTCCTTAAGGGCCACTTCCTCTCATCACTTGGACACAAT
ACCCTCTTTTTACCCTTTGCGTCCTTCACATCAAAAACTTCATCATCAAC
AAAACCCTTTTCCTTCAACTTTGTTgcatactaataataataacatggtT
GATGCTATAGCTTCTTCAATTaccaacaacaataacaactcCATTAACTA
CCAACTACCACCTGATCTGGGTCTACCCTATCACCACCACAACCAATCAC
ACAACGTCATGCTAAGCATGCAACAAAATCACCCTATTTCaacatttcat
caaacacccGCCCTTCATCCTTTAGGAAGCCATGGCTTTTCAGTGTTTGG
TGCAAAGTCTCAAGCAAGTTTATCAGTACAGTCACTGGATGAACTTGGTA
TGAGTAATAATAATGCTGATCTTGTTGGTGCTTATGGAGTACTATCAGGA
CCCCAAGGTCATGGCCATGTAAGTTCTGGTCATGGAAATGGAGATAGAAG
AGAGCTGAACTTGTCAACACCTTCTGCTGCATCAAGAATATTGGACCATG
AAAAGAATTTGGAGAATAATAGCAGTACTATCAATAGAGGAGAAGGTAAC
GTTGATTCGTGGATTTGTTCATCTGATTAG

Coding sequence (CDS) from alignment at Chr_LG09-CM007369.1:18532573..18533802+

>rna-TanjilR_01635_La_Tanjil_v1.0 ID=rna-TanjilR_01635_La_Tanjil_v1.0; Name=rna-TanjilR_01635; organism=Lupinus angustifolius; type=CDS; length=1230bp; location=Sequence derived from: Chr_LG09-CM007369.1:18532573..18533802+ (Lupinus angustifolius
ATGGATTCTGGTAATAGTGGAAGTGTCTCTTCTAGTGgtgatgaggaata
tgattcacGAGTTGATCACACAACACTACTCCCTTCAAATATCCTCAATC
ATCCTCTCACCCAATTTGCTAAATCTTCATCTTTTGTTTCTTCTCATCAA
CACCAAATCCATCATAACAATCCATCTTTGTTTGATCTTTCATCTAGTTA
CCTCCACTCTCTTTCTCAACCCCATCCAAACACAAATCCAAACTCTTTTC
TAAATTTGGATACTGCTACTAATTCTATATCTCAAGGAAAAAGATCTGAA
CCCAATTGCACCCACCCTTCAAACCTACAAGGTTTTAATCAAGGATCGTT
TCCACCACCTCATGGTTTTGGACATGATGACAATAACAATGCAAGGTTGG
TTTCATCAGCACCTACCAATAATGCAGCAGCGCGAAACTCAAAGAAGAGA
ACTAGAGCTTCTAGAAGAACACCTACCACGGTTCTCACCACCGACACCTC
AAATTTCAGGGCCATGGTTCAAGAATTCACTGGCATCCCTGCACCACCCT
TTTCAGGCACATCATCTTATTCTCGTACTCGCAGGCTTGACCTTCTCACC
GGTTCCTCCTCTTCCTTAAGGGCCACTTCCTCTCATCACTTGGACACAAT
ACCCTCTTTTTACCCTTTGCGTCCTTCACATCAAAAACTTCATCATCAAC
AAAACCCTTTTCCTTCAACTTTGTTgcatactaataataataacatggtT
GATGCTATAGCTTCTTCAATTaccaacaacaataacaactcCATTAACTA
CCAACTACCACCTGATCTGGGTCTACCCTATCACCACCACAACCAATCAC
ACAACGTCATGCTAAGCATGCAACAAAATCACCCTATTTCaacatttcat
caaacacccGCCCTTCATCCTTTAGGAAGCCATGGCTTTTCAGTGTTTGG
TGCAAAGTCTCAAGCAAGTTTATCAGTACAGTCACTGGATGAACTTGGTA
TGAGTAATAATAATGCTGATCTTGTTGGTGCTTATGGAGTACTATCAGGA
CCCCAAGGTCATGGCCATGTAAGTTCTGGTCATGGAAATGGAGATAGAAG
AGAGCTGAACTTGTCAACACCTTCTGCTGCATCAAGAATATTGGACCATG
AAAAGAATTTGGAGAATAATAGCAGTACTATCAATAGAGGAGAAGGTAAC
GTTGATTCGTGGATTTGTTCATCTGATTAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

Search form

rna-TanjilR_01635