rna-TanjilR_28908

Transcript Overview


Name	rna-TanjilR_28908
Unique Name	rna-TanjilR_28908_La_Tanjil_v1.0
Type	mRNA
Organism	Lupinus angustifolius (blue lupin)
Sequence length	981
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_LG15-CM007375.1	supercontig	Chr_LG15-CM007375.1:5180009..5180989 +	Lupinus angustifolius L. Tanjil genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Lupinus angustifolius L. Tanjil genome v1.0	2019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.0	2020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot	2020-01-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ananR299	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaR0394	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
anccR0483	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancrR0462	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
anpsR0335	Pisum sativum Cameor genome v1a	Pisum sativum
anpvR0424	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR0456	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anvuR0375	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anasR0406	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR0413	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR0424	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anzwsR0378	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
antifR0386	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR0386	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
anvrvR0365	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvuaR0357	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvssR0425	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
ancanR0354	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
anavjR0393	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR0400	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR0405	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
ancarR0388		Cicer arietinum
anccaR0335	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR0343	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anvumR0417	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvvaR0400	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvasR0408	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0409	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR0427	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0427	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anpvfR0437	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anvunR0356	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR0470	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris

Orthologs


Gene/Transcript	Assembly	Species
Vigst.02G161300.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
Va04G018690.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
PvulFLAVERTChr03.1232	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
rna-XM_004501810.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
rna-KK1_008843	Cajanus cajan Asha genome v1.0	Cajanus cajan
Psat5g116640.1	Pisum sativum Cameor genome v1a	Pisum sativum
Vigan.02G234300.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Psat05G0345800-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
Phvul.003G205700.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Ca_07441	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
PvulFLAVERTChr09.1001033	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
rna-XM_014644494.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Vigun09g094700.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Vigst.01G274100.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
LR48_mrnaVigan01g230600	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Vfaba.Hedin2.R1.2g089080.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Cr_12581.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
Vigun09g094700.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
Cc_v2.0_26953.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
XM_058927579.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
Cc_v2.0_05796.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
Va01G082460.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Vfaba.Tiffany.R1.2g073280.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Phvul.009G173000.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
evm.model.Chr09.125	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
LR48_mrnaVigan04g068300	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Vum_02G01819.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
jg52849.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Vigan.01G397800.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-TanjilG_28908	gene-TanjilG_28908_La_Tanjil_v1.0	Lupinus angustifolius	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_28908	rna-TanjilR_28908_La_Tanjil_v1.0-protein	Lupinus angustifolius	polypeptide
rna-TanjilR_28908_La_Tanjil_v1.0	rna-TanjilR_28908_La_Tanjil_v1.0	Lupinus angustifolius	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_28908_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:5180009..5180771	rna-TanjilR_28908_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:5180009..5180771	Lupinus angustifolius	exon
rna-TanjilR_28908_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:5180895..5180989	rna-TanjilR_28908_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:5180895..5180989	Lupinus angustifolius	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_28908_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:5180009..5180771	rna-TanjilR_28908_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:5180009..5180771	Lupinus angustifolius	CDS
rna-TanjilR_28908_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:5180895..5180989	rna-TanjilR_28908_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:5180895..5180989	Lupinus angustifolius	CDS

Homology

The following BLAST results are available for this feature:

BLAST of rna-TanjilR_28908 vs.

BLAST of rna-TanjilR_28908 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0

Position :

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Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008586	Protein of unknown function DUF868, plant	PFAM	PF05910	DUF868	coord: 29..258 e-value: 4.6E-94 score: 315.2

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_LG15-CM007375.1:5180009..5180989+
coding sequence from alignment at Chr_LG15-CM007375.1:5180009..5180989+

mRNA sequence

>rna-TanjilR_28908_La_Tanjil_v1.0 ID=rna-TanjilR_28908_La_Tanjil_v1.0; Name=rna-TanjilR_28908; organism=Lupinus angustifolius; type=mRNA; length=981bp
atgcaaGACTCTATTGGAATTCCAGCTTGCTTTTCTTCTGTAGAGAAGAC
CAGTGATGATAATGTTCTTGGTGCTGTGACCCGTTCAGGTCAAAGTGTTT
ACATGTCTGTCTATAGAACAAAGATTGCTGATCATTGCCGCTTGATCACT
ATCACTTGGTGCAAAAACTTATTGCTTCATGGTCTATCAATATCAGTTGA
AGGCCCAGAAGGAGAAAATCAATATAGCTGCAAGGTTGAGCTAAAGCCAT
GGTACTTTTGGAGGAAACAAGGTTCTAAGCGGTTCATAGTAGATGGTAaa
tatgttgatgttttttGGGATCTCAAAGCTGCAAAATTCAATGGTGAAAC
TGAACCAACCTCGGAGTACTATGTAGCAGTGGTTTGTGATCAAGAGATTG
TGCTGCTTCTTGGTGATCTAAAGAAAGAAGCACATAAAAGAACTGGATGC
AAGCAAGCTCTTATTGACCCTATTTTGGTTTCAAGAAAAGAGCACATATT
TGGGAAGAGGAAGTTCTCTACTAAAGCTAAGTTTCATGAGAAAGGAAGGT
TCCATGAGATCTCAATAGAGTGCAAGAACAAGAGCAGTGGTGACTTACCA
TCTGTTAGTGAGATTCAGCCAGAACTTGAGATAAGATTTGATGGGCATTT
AgtcattcatgtgaagcatttacAATGGAAATTTAGAGGGAATGAATCAG
TTCATCTTAACAAGATGAGAGTGGAAGTGTATTGGGATGTTCATGATTGG
CTCTTTAGTCCAGGTTTAAAGCatgcattatttattttaaagccGATTTT
GCCATCTTCTTCtgcatcatcattatcatcatcgtCACCATCATTATCGC
GTTCATCGTCATCTACACCATTGTCATCTCAGACAGAGAGTTCTGGGTCA
GTGGAAGGGTTGAGTACAATTAGTGggttatcatcatcatcagagTTTTC
CTTGTTTCTCTATGCCTGGAAGGTTGAATGA

protein sequence of rna-TanjilR_28908_La_Tanjil_v1.0

>rna-TanjilR_28908_La_Tanjil_v1.0 ID=rna-TanjilR_28908_La_Tanjil_v1.0; Name=rna-TanjilR_28908_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=285bp
MQDSIGIPACFSSVEKTSDDNVLGAVTRSGQSVYMSVYRTKIADHCRLIT
ITWCKNLLLHGLSISVEGPEGENQYSCKVELKPWYFWRKQGSKRFIVDGK
YVDVFWDLKAAKFNGETEPTSEYYVAVVCDQEIVLLLGDLKKEAHKRTGC
KQALIDPILVSRKEHIFGKRKFSTKAKFHEKGRFHEISIECKNKSSGDLP
SVSEIQPELEIRFDGHLVIHVKHLQWKFRGNESVHLNKMRVEVYWDVHDW
LFSPESSGSVEGLSTISGLSSSSEFSLFLYAWKVE

mRNA from alignment at Chr_LG15-CM007375.1:5180009..5180989+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-TanjilR_28908_La_Tanjil_v1.0 ID=rna-TanjilR_28908_La_Tanjil_v1.0; Name=rna-TanjilR_28908; organism=Lupinus angustifolius; type=mRNA; length=981bp; location=Sequence derived from: Chr_LG15-CM007375.1:5180009..5180989+ (Lupinus angustifolius
atgcaaGACTCTATTGGAATTCCAGCTTGCTTTTCTTCTGTAGAGAAGAC
CAGTGATGATAATGTTCTTGGTGCTGTGACCCGTTCAGGTCAAAGTGTTT
ACATGTCTGTCTATAGAACAAAGATTGCTGATCATTGCCGCTTGATCACT
ATCACTTGGTGCAAAAACTTATTGCTTCATGGTCTATCAATATCAGTTGA
AGGCCCAGAAGGAGAAAATCAATATAGCTGCAAGGTTGAGCTAAAGCCAT
GGTACTTTTGGAGGAAACAAGGTTCTAAGCGGTTCATAGTAGATGGTAaa
tatgttgatgttttttGGGATCTCAAAGCTGCAAAATTCAATGGTGAAAC
TGAACCAACCTCGGAGTACTATGTAGCAGTGGTTTGTGATCAAGAGATTG
TGCTGCTTCTTGGTGATCTAAAGAAAGAAGCACATAAAAGAACTGGATGC
AAGCAAGCTCTTATTGACCCTATTTTGGTTTCAAGAAAAGAGCACATATT
TGGGAAGAGGAAGTTCTCTACTAAAGCTAAGTTTCATGAGAAAGGAAGGT
TCCATGAGATCTCAATAGAGTGCAAGAACAAGAGCAGTGGTGACTTACCA
TCTGTTAGTGAGATTCAGCCAGAACTTGAGATAAGATTTGATGGGCATTT
AgtcattcatgtgaagcatttacAATGGAAATTTAGAGGGAATGAATCAG
TTCATCTTAACAAGATGAGAGTGGAAGTGTATTGGGATGTTCATGATTGG
CTCTTTAGTCCAGGTTTAAAGCatgcattatttattttaaagccGATTTT
GCCATCTTCTTCtgcatcatcattatcatcatcgtCACCATCATTATCGC
GTTCATCGTCATCTACACCATTGTCATCTCAGACAGAGAGTTCTGGGTCA
GTGGAAGGGTTGAGTACAATTAGTGggttatcatcatcatcagagTTTTC
CTTGTTTCTCTATGCCTGGAAGGTTGAATGA

Coding sequence (CDS) from alignment at Chr_LG15-CM007375.1:5180009..5180989+

>rna-TanjilR_28908_La_Tanjil_v1.0 ID=rna-TanjilR_28908_La_Tanjil_v1.0; Name=rna-TanjilR_28908; organism=Lupinus angustifolius; type=CDS; length=858bp; location=Sequence derived from: Chr_LG15-CM007375.1:5180009..5180989+ (Lupinus angustifolius
atgcaaGACTCTATTGGAATTCCAGCTTGCTTTTCTTCTGTAGAGAAGAC
CAGTGATGATAATGTTCTTGGTGCTGTGACCCGTTCAGGTCAAAGTGTTT
ACATGTCTGTCTATAGAACAAAGATTGCTGATCATTGCCGCTTGATCACT
ATCACTTGGTGCAAAAACTTATTGCTTCATGGTCTATCAATATCAGTTGA
AGGCCCAGAAGGAGAAAATCAATATAGCTGCAAGGTTGAGCTAAAGCCAT
GGTACTTTTGGAGGAAACAAGGTTCTAAGCGGTTCATAGTAGATGGTAaa
tatgttgatgttttttGGGATCTCAAAGCTGCAAAATTCAATGGTGAAAC
TGAACCAACCTCGGAGTACTATGTAGCAGTGGTTTGTGATCAAGAGATTG
TGCTGCTTCTTGGTGATCTAAAGAAAGAAGCACATAAAAGAACTGGATGC
AAGCAAGCTCTTATTGACCCTATTTTGGTTTCAAGAAAAGAGCACATATT
TGGGAAGAGGAAGTTCTCTACTAAAGCTAAGTTTCATGAGAAAGGAAGGT
TCCATGAGATCTCAATAGAGTGCAAGAACAAGAGCAGTGGTGACTTACCA
TCTGTTAGTGAGATTCAGCCAGAACTTGAGATAAGATTTGATGGGCATTT
AgtcattcatgtgaagcatttacAATGGAAATTTAGAGGGAATGAATCAG
TTCATCTTAACAAGATGAGAGTGGAAGTGTATTGGGATGTTCATGATTGG
CTCTTTAGTCCAGAGAGTTCTGGGTCAGTGGAAGGGTTGAGTACAATTAG
TGggttatcatcatcatcagagTTTTCCTTGTTTCTCTATGCCTGGAAGG
TTGAATGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008586	DUF868_pln

Search form

rna-TanjilR_28908