rna-TanjilR_01582
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_01582 vs. DB:Swiss
Match: CXE11_ARATH (Probable carboxylesterase 11 OS=Arabidopsis thaliana OX=3702 GN=CXE11 PE=2 SV=1) HSP 1 Score: 344.739 bits (883), Expect = 3.895e-106 Identity = 160/179 (89.39%), Postives = 171/179 (95.53%), Query Frame = 2 Query: 2957 RCVLLGVSCGANIADYVARKAVEAGKHLDPVKVVAQVLMYPFFVGSVPTRSEIKLANSYFYDKAMCMLAWKLFLPEEEFNLDHPAANPLVPGRGPPLKLMPPTMTIVAEHDWMRDRAIAYSEELRKVNVDAPVLEYKDAVHEFATLDILLKTPQAQVCAEDVAIWVKKYISLRGHEFSY 3493 RCVLLGVSCGANIADYVARKA+E G++LDPVKVVAQVLMYPFF+GSVPT+SEIK ANSYFYDK MC+LAWKLFLPEEEF+LDH AANPLVPGR PPLK MPPT+TIVAEHDWMRDRAIAYSEELRKVNVDAPVLEYKDAVHEFATLD+LL+TPQAQ CAED+AIW KKYISLRGHEFSY Sbjct: 282 RCVLLGVSCGANIADYVARKAIEVGQNLDPVKVVAQVLMYPFFIGSVPTQSEIKQANSYFYDKPMCILAWKLFLPEEEFSLDHQAANPLVPGRSPPLKFMPPTLTIVAEHDWMRDRAIAYSEELRKVNVDAPVLEYKDAVHEFATLDMLLRTPQAQACAEDIAIWAKKYISLRGHEFSY 460 HSP 2 Score: 304.294 bits (778), Expect = 4.045e-91 Identity = 170/283 (60.07%), Postives = 193/283 (68.20%), Query Frame = 1 Query: 1 MPSVAVKLYSVFFKFLFKQRLQNRIQSP--IQLPDPFGVTSRPDESVANSNPSFSEGVATKDIHIDPFTSLSIRIFLPDSALT-LXXXXXXXXXXXXXXLVKVVASETASSFRRNSYGPSIAAESRDEDEASRRNSVGEGLGS----------YKGYSPGLDN-RRKKLPVMLQFHGGGWVSGSNDSVANDFFCRRIAKLCDVIVVAVGYRLAPENRYPAAFEDGMKVLSWLAKQANLAECSKSMG--------VKKLDSHNRHIVDSFGASMVEPWLAAHGN 783 MPSV VKLYSVFFKFL K RLQNRIQS DPFGVT+RP+ESVA NP F++GVATKDIHIDP TSLS+RIFLP+SALT L S + +A S R + + + E SRRNS G GS Y+GY+P +KLPVMLQFHGGGWVSGSNDSVANDFFCRR+AK CD+IV+AVGYRLAPENRYPAA EDG KVL WL KQANLAEC+KSMG VKK + N+HIVD+FGAS+VEPWLA H + Sbjct: 1 MPSVGVKLYSVFFKFLLKHRLQNRIQSSGDESSSDPFGVTTRPEESVAAPNPLFTDGVATKDIHIDPLTSLSVRIFLPESALTPLEPSTSACVYSGKARTLNNIAGSDLLSRRNSLGSSNSLLSHKVE---SRRNSYGYTTGSSSPEAGSSDVYRGYAPSSSGGNSRKLPVMLQFHGGGWVSGSNDSVANDFFCRRMAKHCDIIVLAVGYRLAPENRYPAACEDGFKVLKWLGKQANLAECNKSMGNSRRPGGEVKKSEV-NKHIVDAFGASLVEPWLANHAD 279
BLAST of rna-TanjilR_01582 vs. DB:Swiss
Match: CXE16_ARATH (Probable carboxylesterase 16 OS=Arabidopsis thaliana OX=3702 GN=CXE16 PE=2 SV=1) HSP 1 Score: 328.176 bits (840), Expect = 4.669e-100 Identity = 156/180 (86.67%), Postives = 169/180 (93.89%), Query Frame = 2 Query: 2957 RCVLLGVSCGANIADYVARKAVEAGKHLDPVKVVAQVLMYPFFVGSVPTRSEIKLANSYFYDKAMCMLAWKLFLPEEEFNLDHPAANPLVPGR-GPPLKLMPPTMTIVAEHDWMRDRAIAYSEELRKVNVDAPVLEYKDAVHEFATLDILLKTPQAQVCAEDVAIWVKKYISLRGHEFSY 3493 RCVLLGVSCG NIADYVARKAVEAGK L+PVKVVAQVLMYPFF+G+ PT+SEIKLANSYFYDK + +LAWKLFLPE+EF+ DHPAANPL R GPPLKLMPPT+T+VAEHDWMRDRAIAYSEELRKVNVD+PVLEYKDAVHEFATLD+LLKTPQAQ CAED+AIWVKKYISLRGHEFSY Sbjct: 267 RCVLLGVSCGGNIADYVARKAVEAGKLLEPVKVVAQVLMYPFFIGNNPTQSEIKLANSYFYDKPVSVLAWKLFLPEKEFDFDHPAANPLAHNRSGPPLKLMPPTLTVVAEHDWMRDRAIAYSEELRKVNVDSPVLEYKDAVHEFATLDMLLKTPQAQACAEDIAIWVKKYISLRGHEFSY 446 HSP 2 Score: 310.071 bits (793), Expect = 1.792e-93 Identity = 167/274 (60.95%), Postives = 195/274 (71.17%), Query Frame = 1 Query: 1 MPSVAVKLYSVFFKFLFKQRLQN--RIQSPIQLPDPFGVTSRPDESVANSNPSFSEGVATKDIHIDPFTSLSIRIFLPDSALTLXXXXXXXXXXXXXXLVKVVASETASSFRRNSYGPSIAAESRDEDEASRRNSVG---EGLGSYKGYSPGLDNRRKKLPVMLQFHGGGWVSGSNDSVANDFFCRRIAKLCDVIVVAVGYRLAPENRYPAAFEDGMKVLSWLAKQANLAECSKSMG--------VKKLDSHNRHIVDSFGASMVEPWLAAHGN 783 MP VAVKLYSVFFK L K RLQN I + L D FGV++R DESVA +NPSF++GVATKDIHIDP TSL++RIFLP+SAL+ + K + S RR+SYGP+ + + E SRRNS G E L Y GY+P +KLPVMLQFHGGGWVSGS+DS ANDFFCRRIAK+CDVIV+AVGYRLAPENRYPAAFEDG+KVL WL KQANLA+C KS+G VKKL+ + IVD+FGASMVEPWLAAH + Sbjct: 1 MPGVAVKLYSVFFKLLLKHRLQNLISISAADGLSDSFGVSTRSDESVAAANPSFTDGVATKDIHIDPMTSLTVRIFLPESALSPEPDSLRH---------KDNYNHQPRSDRRHSYGPNHNSPAPAERNESRRNSYGCNNENLEPYGGYAPSAKRNSRKLPVMLQFHGGGWVSGSSDSAANDFFCRRIAKVCDVIVLAVGYRLAPENRYPAAFEDGVKVLHWLGKQANLADCCKSLGNRRVNGVEVKKLNVQGQ-IVDAFGASMVEPWLAAHAD 264
BLAST of rna-TanjilR_01582 vs. DB:Swiss
Match: GID1B_ARATH (Gibberellin receptor GID1B OS=Arabidopsis thaliana OX=3702 GN=GID1B PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.441e-14 Identity = 54/145 (37.24%), Postives = 75/145 (51.72%), Query Frame = 2 Query: 2966 LLGVSCGANIADYVARKAVEAGKHLDPVKVVAQVLMYPFFVGSVPTRSEIKLANSYFYDKAMCMLAWKLFLPEEEFNLDHPAANPLVPGRGPPLKLM--PPTMTIVAEHDWMRDRAIAYSEELRKVNVDAPVLEYKDAVHEFATL 3394 L G S G NIA VA +A G VKV+ +L++P F G T+SE L YF W+ +LPE E + DHPA NP P RG LK + P ++ +VA D ++D +AY + L+K ++ +L K A F L Sbjct: 187 LAGDSSGGNIAHNVAVRATNEG-----VKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGE-DRDHPACNPFGP-RGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTGLEVNLLYLKQATIGFYFL 324 HSP 2 Score: 75.8702 bits (185), Expect = 3.875e-13 Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = 1 Query: 463 LPVMLQFHGGGWVSGSNDSVANDFFCRRIAKLCDVIVVAVGYRLAPENRYPAAFEDGMKVLSWLAKQANL 672 +PV++ FHGG + S +S D FCRR+ +C V+VV+V YR +PE+RYP A++DG L+W+ + L Sbjct: 106 VPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRVWL 175
BLAST of rna-TanjilR_01582 vs. DB:Swiss
Match: GID1A_ARATH (Gibberellin receptor GID1A OS=Arabidopsis thaliana OX=3702 GN=GID1A PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.573e-14 Identity = 53/149 (35.57%), Postives = 75/149 (50.34%), Query Frame = 2 Query: 2954 IRCVLLGVSCGANIADYVARKAVEAGKHLDPVKVVAQVLMYPFFVGSVPTRSEIKLANSYFYDKAMCMLAWKLFLPEEEFNLDHPAANPLVPGRGPPLK--LMPPTMTIVAEHDWMRDRAIAYSEELRKVNVDAPVLEYKDAVHEFATL 3394 + L G S G NIA VA +A E+G + V+ +L+ P F G+ T SE L YF WK FLPE E + +HPA NP P RG L+ P ++ +VA D +RD +AY+E L+K + ++ + A F L Sbjct: 183 VHIFLAGDSSGGNIAHNVALRAGESG-----IDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGE-DREHPACNPFSP-RGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYLL 324 HSP 2 Score: 72.4034 bits (176), Expect = 5.295e-12 Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1 Query: 463 LPVMLQFHGGGWVSGSNDSVANDFFCRRIAKLCDVIVVAVGYRLAPENRYPAAFEDGMKVLSWLAKQANL 672 +PV+L FHGG + S +S D CRR+ LC +VV+V YR APEN YP A++DG L+W+ ++ L Sbjct: 106 VPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRSWL 175
BLAST of rna-TanjilR_01582 vs. DB:Swiss
Match: GID1C_ARATH (Gibberellin receptor GID1C OS=Arabidopsis thaliana OX=3702 GN=GID1C PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.944e-13 Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 1 Query: 463 LPVMLQFHGGGWVSGSNDSVANDFFCRRIAKLCDVIVVAVGYRLAPENRYPAAFEDGMKVLSWLAKQANL--AECSKSMGVKKLDSHNRHIVDSFGASMVEPWLAAHGN 783 +PV++ FHGG + S +S D CRR+ LC +VV+V YR APENRYP A++DG VL W+ + L + SK DS +IV + VE + GN Sbjct: 104 VPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRIDVLGN 212 HSP 2 Score: 70.8626 bits (172), Expect = 1.747e-11 Identity = 49/149 (32.89%), Postives = 75/149 (50.34%), Query Frame = 2 Query: 2954 IRCVLLGVSCGANIADYVARKAVEAGKHLDPVKVVAQVLMYPFFVGSVPTRSEIKLANSYFYDKAMCMLAWKLFLPEEEFNLDHPAANPLVPGRGPPLKLM--PPTMTIVAEHDWMRDRAIAYSEELRKVNVDAPVLEYKDAVHEFATL 3394 +R L G S G NI VA +AVE+ + V+ +L+ P F G+ T SE +L YF W+ FLPE E + +HPA +P P R L+ + P ++ +VA D ++D + Y+E L+K + +L + A F L Sbjct: 181 VRIFLAGDSSGGNIVHNVAVRAVES-----RIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGE-DREHPACSPFGP-RSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAGQEVKLLYLEQATIGFYLL 322
BLAST of rna-TanjilR_01582 vs. DB:Swiss
Match: CXE9_ARATH (Probable carboxylesterase 9 OS=Arabidopsis thaliana OX=3702 GN=CXE9 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.750e-12 Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 1 Query: 436 PGLDNRRKKLPVMLQFHGGGWVSGSNDSVANDFFCRRIAKLCDVIVVAVGYRLAPENRYPAAFEDGMKVLSWLAKQ 663 P DN +LP+++ HG GW+ +S AND C ++A VIVV+V YRL PE+R PA ++D + L W+ +Q Sbjct: 70 PSNDNAVARLPIIIHLHGSGWILYPANSAANDRCCSQMASELTVIVVSVHYRLPPEHRLPAQYDDALDALLWVKQQ 145
BLAST of rna-TanjilR_01582 vs. DB:Swiss
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica OX=39947 GN=GID1 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 5.780e-12 Identity = 52/148 (35.14%), Postives = 74/148 (50.00%), Query Frame = 2 Query: 2957 RCVLLGVSCGANIADYVARKAVEAGKHLDPVKVVAQVLMYPFFVGSVPTRSEIKLANSYFYDKAMCMLAWKLFLPEEEFNLDHPAANPLVPGRGPPLKLMP--PTMTIVAEHDWMRDRAIAYSEELRKVNVDAPVLEYKDAVHEFATL 3394 R L G S G NIA +VA +A + G VKV +L+ F G+ T SE +L YF WK +LPE+ + DHPA NP P G L +P ++ IV+ D DR +AY++ LR+ V++ ++A F L Sbjct: 191 RVFLSGDSSGGNIAHHVAVRAADEG-----VKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDA-DRDHPACNPFGP-NGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALREDGHHVKVVQCENATVGFYLL 331 HSP 2 Score: 71.633 bits (174), Expect = 1.039e-11 Identity = 32/67 (47.76%), Postives = 41/67 (61.19%), Query Frame = 1 Query: 463 LPVMLQFHGGGWVSGSNDSVANDFFCRRIAKLCDVIVVAVGYRLAPENRYPAAFEDGMKVLSWLAKQ 663 PV++ FHGG +V S S D CRR KL +VV+V YR APE+RYP A++DG L W+ Q Sbjct: 113 FPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQ 179
BLAST of rna-TanjilR_01582 vs. DB:Swiss
Match: CXE20_ARATH (Probable carboxylesterase 120 OS=Arabidopsis thaliana OX=3702 GN=CXE20 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 9.428e-11 Identity = 29/66 (43.94%), Postives = 46/66 (69.70%), Query Frame = 1 Query: 457 KKLPVMLQFHGGGWVSGSNDSVANDFFCRRIAKLCDVIVVAVGYRLAPENRYPAAFEDGMKVLSWL 654 +KLP+++ +HGGG++ S D FC +A+ + IVV+ YRLAPE+R PAA++DG++ L W+ Sbjct: 78 QKLPIVVYYHGGGFILCSVDMQLFHDFCSEVARDLNAIVVSPSYRLAPEHRLPAAYDDGVEALDWI 143
BLAST of rna-TanjilR_01582 vs. DB:Swiss
Match: CXE17_ARATH (Probable carboxylesterase 17 OS=Arabidopsis thaliana OX=3702 GN=CXE17 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.090e-10 Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 1 Query: 463 LPVMLQFHGGGWVSGSNDSVANDFFCRRIAKLCDVIVVAVGYRLAPENRYPAAFEDGMKVLSWLAKQ 663 LP+++ FHGGG+ GS F +A ++V+V YRLAPE+R PAA++DG+ V+SWL KQ Sbjct: 92 LPLLVYFHGGGFCVGSAAWSCYHDFLTSLAVKARCVIVSVNYRLAPEHRLPAAYDDGVNVVSWLVKQ 158 HSP 2 Score: 64.6994 bits (156), Expect = 1.528e-9 Identity = 46/148 (31.08%), Postives = 72/148 (48.65%), Query Frame = 2 Query: 2966 LLGVSCGANIADYVARKAVEAGKHLDPVKVVAQVLMYPFFVGSVPTRSEIKLANSYFYDKAMCMLA----WKLFLPEEEFNLDHPAANPLVPGRGPPLKLMPPTMTIVAEHDWMRDRAIAYSEELRKVNVDAPVLEYKDAVHEFATLD 3397 L G S GANIA VA + + +GK+ + + + +L++PFF G T SE + + A+ + A W+L LP + DHP NPL+ G L P TM +AE D +++R + + +R + + H F LD Sbjct: 180 LAGDSAGANIAYQVAVRIMASGKYANTLHLKGIILIHPFFGGESRTSSEKQ--QHHTKSSALTLSASDAYWRLALPRGA-SRDHPWCNPLMSSAGAKL---PTTMVFMAEFDILKERNLEMCKVMRSHGKRVEGIVHGGVGHAFHILD 321
BLAST of rna-TanjilR_01582 vs. DB:Swiss
Match: HIDM_GLYEC (2-hydroxyisoflavanone dehydratase OS=Glycyrrhiza echinata OX=46348 GN=HIDM PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.443e-10 Identity = 45/166 (27.11%), Postives = 78/166 (46.99%), Query Frame = 1 Query: 289 LVKVVASETASSFRRNSYGPSIAAESRDEDEASRRNSVGEGLG-SYKGYSPGLDNRRKKLPVMLQFHGGGWVSGSNDSVANDFFCRRIAKLCDVIVVAVGYRLAPENRYPAAFEDGMKVLSWLAKQANLAECSKSMGVKKLDSHNRHIVDSFGASMVEPWLAAHGN 783 L++V T F +S+ P + E + +++ + E S + Y P L+N +KLP+++ +HGG + S S + + +A +V+VV++ YRLAPE+ PAA+EDG L W+ H ++ + +PWL HG+ Sbjct: 20 LLRVYKDGTVERFLGSSFVPP-SPEDPETGVSTKDIVISENPTISARVYLPKLNNTTEKLPILVYYHGGAFCLESAFSFLHQRYLNIVASKANVLVVSIEYRLAPEHPLPAAYEDGWYALKWVTS---------------------HSTNNNKPTNADPWLIKHGD 163 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_01582 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_01582_La_Tanjil_v1.0 ID=rna-TanjilR_01582_La_Tanjil_v1.0; Name=rna-TanjilR_01582; organism=Lupinus angustifolius; type=mRNA; length=3496bpback to top protein sequence of rna-TanjilR_01582_La_Tanjil_v1.0 >rna-TanjilR_01582_La_Tanjil_v1.0 ID=rna-TanjilR_01582_La_Tanjil_v1.0; Name=rna-TanjilR_01582_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=442bpback to top mRNA from alignment at Chr_LG20-CM007380.1:20707108..20710603- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_01582_La_Tanjil_v1.0 ID=rna-TanjilR_01582_La_Tanjil_v1.0; Name=rna-TanjilR_01582; organism=Lupinus angustifolius; type=mRNA; length=3496bp; location=Sequence derived from: Chr_LG20-CM007380.1:20707108..20710603- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG20-CM007380.1:20707108..20710603- >rna-TanjilR_01582_La_Tanjil_v1.0 ID=rna-TanjilR_01582_La_Tanjil_v1.0; Name=rna-TanjilR_01582; organism=Lupinus angustifolius; type=CDS; length=1329bp; location=Sequence derived from: Chr_LG20-CM007380.1:20707108..20710603- (Lupinus angustifoliusback to top |