Transcript Overview
| Name | LR48_mrnaVigan08g165400 |
|---|
| Unique Name | LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1 |
|---|
| Type | mRNA |
|---|
| Organism | Vigna angularis (Adzuki bean, red mung bean, azuki) |
|---|
| Sequence length | 3254 |
|---|
| Product | hypothetical protein |
|---|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| LR48_mrnaVigan08g165400 | LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1-protein | Vigna angularis | polypeptide |
| LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1 | LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1 | Vigna angularis | polypeptide |
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1-start_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26747462..26747464 | LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1-start_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26747462..26747464 | Vigna angularis | start_codon |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26747289..26747464 | LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26747289..26747464 | Vigna angularis | exon |
| LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26746329..26746428 | LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26746329..26746428 | Vigna angularis | exon |
| LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26745680..26745739 | LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26745680..26745739 | Vigna angularis | exon |
| LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26744477..26744591 | LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26744477..26744591 | Vigna angularis | exon |
| LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26744211..26744314 | LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1-exon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26744211..26744314 | Vigna angularis | exon |
The following intron feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26746429..26747288 | LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26746429..26747288 | Vigna angularis | intron |
| LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26745740..26746328 | LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26745740..26746328 | Vigna angularis | intron |
| LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26744592..26745679 | LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26744592..26745679 | Vigna angularis | intron |
| LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26744315..26744476 | LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1-intron-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26744315..26744476 | Vigna angularis | intron |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| CDS7018 | CDS7018_Va_Jingnong6_v1.1 | Vigna angularis | CDS |
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1-stop_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26744211..26744213 | LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1-stop_codon-Chr_8-CM003378.1_Va_Jingnong6_v1.1-1589992784:26744211..26744213 | Vigna angularis | stop_codon |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Vigna angularis Jingnong 6 genome v1.1
Date Performed: 2020-05-21
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | GENE3D | 1.10.10.60 | | coord: 45..117
e-value: 2.4E-5
score: 26.4 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 99..125 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 99..119 |
| IPR001005 | SANT/Myb domain | CDD | cd00167 | SANT | coord: 45..94
e-value: 1.71656E-4
score: 35.629 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g165400; organism=Vigna angularis; type=mRNA; length=3254bp
ATGGCTAACCCTTCTGGGAATCACGAAGAAGAGCAGACAACCCATGTTGC
GTCGTCGTTCAACGGGAATTTGGCAGCCGACACTTCGCCCACCGCGCTCG
CCATGAAGCACAACTCTGGCATCGCCCTCGATTGGACCCCTCGGGAACAA
ACCATTCTCGAAGAAGGACTCTCTCTGTATGATACCGAATTTTCTTTTCT
TTCCTTTTTTGTGAGTTGATTGTTGCTTTGTTGTTTCAGCTTTTACTTTT
TTATTTATTTTTATTTTCAAAGCCTTTTGTTCTGTGGGGGGATTTGCACA
TGGTTTTTGGAAATTCAAAGTGTGTCTGTATTAATGTTTTGATGATATTG
ATAAATACTTTGGCTATCTATGTGGTGTATTTGATATGGGAGTAGGTTCT
GATAAGCAGTTCCATTAGAATCTGTCGAGAACAATTATGTGTAATGGTAT
CTTTGTATTTTTTTTTCTTTTTTCTTTTTCTATAAGCTTGTTGTCCTTCA
TTTTACTCTTTCTGGTTTTAGTTCAATCTCTATGTTTATCTTATGTCTTT
GTTTGAACAAATTAATTCTTTCGTTAATTATTTTTTTGTATTAACAATCT
TACTTATAGCGAACATAACAAACACTTATTTCACGTGACATTTCTCATAG
TCTGTAAGGTCATATGTTACCAAATTGACCAAGTTTGTATGGTACAACAG
AAAGACTTTAAGGGAACCAGAATGAAACATAAGAAAAACTGAGTATAAAA
GGGTATTTTAACCTATATTTTCTGGTGTCACCTTTTCTTTTAAAGTATTT
TTGTGACCTTGTAATGTTGTGGATTGGTTATTGCAGTTTGAAATCAAATA
TTTTTATTACATGTATTTACTTTAATGTGTAAGCAGATAATCTTGAATTG
CGTTCTGTGCTTATTCAGTGATTTCAGTGTTATGTTGTTTGCCTTTTAAC
ATTTGTTTCTTGACGAGTAAGTGTGTTTAATAAGTTCAGTAGCTAGTCAT
TGTTTGAAGAAAAGACACTTTCTTTTTTACTTGTAGGTTTGCTTCTGAAC
CAAATCTCACTCGCTATGCAAAGATAGCAATAAATCTAAATAACAAGACA
GTCCGGGATGTAGCACTGAGGGTCAGGTGGATGAATGTAAGCTACATACG
TGTTGTTGTCACAAGTCGTTTATGTCACTATGAATGCCTTAACCTGTTTT
TCAGCCTAGATAGAGTGTTTATTAATTTTTTTGTTAGAGATGATGCATAA
AACTATTTTTCTTTCATTATGTTTATTATTTTTTGAAGGTTAAAGATAAT
CATCTTACCTTCAGCAAGAAAGGTTAATTTATGAAGTTTCCACAATTAGA
ATGGTTCTGGAAAGTTACATAGCTTTTGCAAGTTGCAACACTTTAATTCT
TGATGGAAAATAAAACAAGATGAGATTGTTTTACACTTAGCTTCTGCATA
CTCTGATTAAAATGAACACAATTTCTAAGAGGCTGAGCTAGTTTGTTATT
GATTGCTCCTCTTTTTGGCCACTTATTTTAAGCAAACATTATTTGCTTTC
CTTTTGAAGGCATTGTTATAACTCAAAGTTGTTGTATGCACCTACAGTAG
TTAAATTTACAAATCTACCACAAATATTCAATATATATTTCATAAAGTTC
CAAAGAAGTCCCAAAGATTTTTAAATTGGTTACTTTCTCCAACTAACGAC
CTGTCTGGCTTGTATTTTTCTACAGAAAAAGGAAAATTGCAAGAGAAGGA
AGGATGAATTTTCAAGGAAAAGTAAAGATAGAAAGGTACCAGTTACATTT
ATTTGATATCATCTATGTATTATTTGAATGGGTATTTTGTGTTCTCACTC
TTGTGCATACCAGTGTAGATGTGCTTTTTAACATCTTTCACTGTCATGTG
CATGCTACAGTATCTTTCTGTTTCTTTTTGTTGTTTTCCAATGCATTTAC
TCTGGCAACCCTACATCCCACATTTAACCACACAAATTGACAGGAGGGAA
ATATATAATACCACCCCATCATACGACTTACTATTTTGAACTGATAATAA
ATATGAAAGCAAATGGTTAGACTTTATATATGTTAATGATTATTGTAGTG
AAATTGTGATAGAAACTTGGATATTATTGGGTGTCTAAGTCCCATGTCGA
GTATATGAGATGTTCAATGGACTATTTGGGTGTTTGACTCTCCACCCTAA
GAGCTACCCTTTAAGAGTGAATTTCTCAAGTGCTTGAGTACTTATCAACT
GGTAGCAGTGTTGACTTTTGGTGTCTTGAAAAGAGCTACCTAGGGAGGGG
TTTGACCAAACAAGGACTTGAATGAAGTGTCACCGAGTGAAGTTTCCTTG
ATTGAATGCTGCCAAGTTGTTAACTGTTAGAGGTGTTGCTATGATAGGAA
TTTGATGGAGTATTTAAGTGTTTGGTTCTTCCCACTCCCCTTAGTAGCCA
GCTTTTGAGCTTGGATTCGTCAAGTGCTTGAATACTTATCATATTGTTAA
TGGATTAGCTCCTTGGCTTTTATTTTTTTGTTGTAGCAAGCATCTTCATG
TTCTGCCCGTTATGATATCATCTCCTTTTAGTGTTGTTTGGTCTTTTCTA
TTCAGGTGGAAAGATTATTCCAATGAATTTCGTTCATCTCCATGGAATTG
CATTCTGCTGGTTATTATTATACCTTTGATCTTGAAATAGGCCAAGCATC
TTATATTTTAAATGTTCTAAACTGAAAAAAAGCTAGCTTGTAATTTTCTC
TCGTTTTTACATGTTAAATATAGAAAAGGTTAGCTTGAAAGAAATACCAT
TGAAAAGATGAAAAAAGGAAGCAAAAGCTATGTAGCATATAATTGCATTT
ATGGAAACTGCTTTTTTTTCCAGGAAAAGGTTTCAGATCCTGCAGTGAGA
TCATCTCACTTTACTGCTCAATCTAATGTTTCCCCATATTCTCCTGCAAT
GAAGATGATGGACAATGATGACAGCATCTGTCATAAAGGTTCGTTTCTTT
CATAACAGTAAATATTTTGATGTTTGCATTTATGATCTATGTCTTGTAGC
CCTTTTCATTGCTTTGGAGATCTCATGTTTTTTTTTTTTTTGCATGTTCC
TTTTGAATGTTGAAGTATCTGCTTTGATCTTTGTTTTGTTCCTTTTGTAG
CTATTGGAGACCCTGCAGGAGAGCTCTTAGAGAAAAATGCACAGGCCTTG
AATAACATCTCTACCAATCTTGCTGCTCTTCAGGCGAGTTCTTTACTTGT
TTAA back to topprotein sequence of LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1 >LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1; organism=Vigna angularis; type=polypeptide; length=184bp
MANPSGNHEEEQTTHVASSFNGNLAADTSPTALAMKHNSGIALDWTPREQ
TILEEGLSLFASEPNLTRYAKIAINLNNKTVRDVALRVRWMNKKENCKRR
KDEFSRKSKDRKEKVSDPAVRSSHFTAQSNVSPYSPAMKMMDNDDSICHK
AIGDPAGELLEKNAQALNNISTNLAALQASSLLV back to topmRNA from alignment at Chr_8-CM003378.1:26744211..26747464- Legend: polypeptidestart_codonexonCDSintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g165400; organism=Vigna angularis; type=mRNA; length=3254bp; location=Sequence derived from: Chr_8-CM003378.1:26744211..26747464- (Vigna angularis
ATGGCTAACCCTTCTGGGAATCACGAAGAAGAGCAGACAACCCATGTTGC
GTCGTCGTTCAACGGGAATTTGGCAGCCGACACTTCGCCCACCGCGCTCG
CCATGAAGCACAACTCTGGCATCGCCCTCGATTGGACCCCTCGGGAACAA
ACCATTCTCGAAGAAGGACTCTCTCTGTATGATACCGAATTTTCTTTTCT
TTCCTTTTTTGTGAGTTGATTGTTGCTTTGTTGTTTCAGCTTTTACTTTT
TTATTTATTTTTATTTTCAAAGCCTTTTGTTCTGTGGGGGGATTTGCACA
TGGTTTTTGGAAATTCAAAGTGTGTCTGTATTAATGTTTTGATGATATTG
ATAAATACTTTGGCTATCTATGTGGTGTATTTGATATGGGAGTAGGTTCT
GATAAGCAGTTCCATTAGAATCTGTCGAGAACAATTATGTGTAATGGTAT
CTTTGTATTTTTTTTTCTTTTTTCTTTTTCTATAAGCTTGTTGTCCTTCA
TTTTACTCTTTCTGGTTTTAGTTCAATCTCTATGTTTATCTTATGTCTTT
GTTTGAACAAATTAATTCTTTCGTTAATTATTTTTTTGTATTAACAATCT
TACTTATAGCGAACATAACAAACACTTATTTCACGTGACATTTCTCATAG
TCTGTAAGGTCATATGTTACCAAATTGACCAAGTTTGTATGGTACAACAG
AAAGACTTTAAGGGAACCAGAATGAAACATAAGAAAAACTGAGTATAAAA
GGGTATTTTAACCTATATTTTCTGGTGTCACCTTTTCTTTTAAAGTATTT
TTGTGACCTTGTAATGTTGTGGATTGGTTATTGCAGTTTGAAATCAAATA
TTTTTATTACATGTATTTACTTTAATGTGTAAGCAGATAATCTTGAATTG
CGTTCTGTGCTTATTCAGTGATTTCAGTGTTATGTTGTTTGCCTTTTAAC
ATTTGTTTCTTGACGAGTAAGTGTGTTTAATAAGTTCAGTAGCTAGTCAT
TGTTTGAAGAAAAGACACTTTCTTTTTTACTTGTAGGTTTGCTTCTGAAC
CAAATCTCACTCGCTATGCAAAGATAGCAATAAATCTAAATAACAAGACA
GTCCGGGATGTAGCACTGAGGGTCAGGTGGATGAATGTAAGCTACATACG
TGTTGTTGTCACAAGTCGTTTATGTCACTATGAATGCCTTAACCTGTTTT
TCAGCCTAGATAGAGTGTTTATTAATTTTTTTGTTAGAGATGATGCATAA
AACTATTTTTCTTTCATTATGTTTATTATTTTTTGAAGGTTAAAGATAAT
CATCTTACCTTCAGCAAGAAAGGTTAATTTATGAAGTTTCCACAATTAGA
ATGGTTCTGGAAAGTTACATAGCTTTTGCAAGTTGCAACACTTTAATTCT
TGATGGAAAATAAAACAAGATGAGATTGTTTTACACTTAGCTTCTGCATA
CTCTGATTAAAATGAACACAATTTCTAAGAGGCTGAGCTAGTTTGTTATT
GATTGCTCCTCTTTTTGGCCACTTATTTTAAGCAAACATTATTTGCTTTC
CTTTTGAAGGCATTGTTATAACTCAAAGTTGTTGTATGCACCTACAGTAG
TTAAATTTACAAATCTACCACAAATATTCAATATATATTTCATAAAGTTC
CAAAGAAGTCCCAAAGATTTTTAAATTGGTTACTTTCTCCAACTAACGAC
CTGTCTGGCTTGTATTTTTCTACAGAAAAAGGAAAATTGCAAGAGAAGGA
AGGATGAATTTTCAAGGAAAAGTAAAGATAGAAAGGTACCAGTTACATTT
ATTTGATATCATCTATGTATTATTTGAATGGGTATTTTGTGTTCTCACTC
TTGTGCATACCAGTGTAGATGTGCTTTTTAACATCTTTCACTGTCATGTG
CATGCTACAGTATCTTTCTGTTTCTTTTTGTTGTTTTCCAATGCATTTAC
TCTGGCAACCCTACATCCCACATTTAACCACACAAATTGACAGGAGGGAA
ATATATAATACCACCCCATCATACGACTTACTATTTTGAACTGATAATAA
ATATGAAAGCAAATGGTTAGACTTTATATATGTTAATGATTATTGTAGTG
AAATTGTGATAGAAACTTGGATATTATTGGGTGTCTAAGTCCCATGTCGA
GTATATGAGATGTTCAATGGACTATTTGGGTGTTTGACTCTCCACCCTAA
GAGCTACCCTTTAAGAGTGAATTTCTCAAGTGCTTGAGTACTTATCAACT
GGTAGCAGTGTTGACTTTTGGTGTCTTGAAAAGAGCTACCTAGGGAGGGG
TTTGACCAAACAAGGACTTGAATGAAGTGTCACCGAGTGAAGTTTCCTTG
ATTGAATGCTGCCAAGTTGTTAACTGTTAGAGGTGTTGCTATGATAGGAA
TTTGATGGAGTATTTAAGTGTTTGGTTCTTCCCACTCCCCTTAGTAGCCA
GCTTTTGAGCTTGGATTCGTCAAGTGCTTGAATACTTATCATATTGTTAA
TGGATTAGCTCCTTGGCTTTTATTTTTTTGTTGTAGCAAGCATCTTCATG
TTCTGCCCGTTATGATATCATCTCCTTTTAGTGTTGTTTGGTCTTTTCTA
TTCAGGTGGAAAGATTATTCCAATGAATTTCGTTCATCTCCATGGAATTG
CATTCTGCTGGTTATTATTATACCTTTGATCTTGAAATAGGCCAAGCATC
TTATATTTTAAATGTTCTAAACTGAAAAAAAGCTAGCTTGTAATTTTCTC
TCGTTTTTACATGTTAAATATAGAAAAGGTTAGCTTGAAAGAAATACCAT
TGAAAAGATGAAAAAAGGAAGCAAAAGCTATGTAGCATATAATTGCATTT
ATGGAAACTGCTTTTTTTTCCAGGAAAAGGTTTCAGATCCTGCAGTGAGA
TCATCTCACTTTACTGCTCAATCTAATGTTTCCCCATATTCTCCTGCAAT
GAAGATGATGGACAATGATGACAGCATCTGTCATAAAGGTTCGTTTCTTT
CATAACAGTAAATATTTTGATGTTTGCATTTATGATCTATGTCTTGTAGC
CCTTTTCATTGCTTTGGAGATCTCATGTTTTTTTTTTTTTTGCATGTTCC
TTTTGAATGTTGAAGTATCTGCTTTGATCTTTGTTTTGTTCCTTTTGTAG
CTATTGGAGACCCTGCAGGAGAGCTCTTAGAGAAAAATGCACAGGCCTTG
AATAACATCTCTACCAATCTTGCTGCTCTTCAGGCGAGTTCTTTACTTGT
TTAA back to topCoding sequence (CDS) from alignment at Chr_8-CM003378.1:26744211..26747464- >LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1 ID=LR48_mrnaVigan08g165400_Va_Jingnong6_v1.1; Name=LR48_mrnaVigan08g165400; organism=Vigna angularis; type=CDS; length=555bp; location=Sequence derived from: Chr_8-CM003378.1:26744211..26747464- (Vigna angularis
ATGGCTAACCCTTCTGGGAATCACGAAGAAGAGCAGACAACCCATGTTGC
GTCGTCGTTCAACGGGAATTTGGCAGCCGACACTTCGCCCACCGCGCTCG
CCATGAAGCACAACTCTGGCATCGCCCTCGATTGGACCCCTCGGGAACAA
ACCATTCTCGAAGAAGGACTCTCTCTGTTTGCTTCTGAACCAAATCTCAC
TCGCTATGCAAAGATAGCAATAAATCTAAATAACAAGACAGTCCGGGATG
TAGCACTGAGGGTCAGGTGGATGAATAAAAAGGAAAATTGCAAGAGAAGG
AAGGATGAATTTTCAAGGAAAAGTAAAGATAGAAAGGAAAAGGTTTCAGA
TCCTGCAGTGAGATCATCTCACTTTACTGCTCAATCTAATGTTTCCCCAT
ATTCTCCTGCAATGAAGATGATGGACAATGATGACAGCATCTGTCATAAA
GCTATTGGAGACCCTGCAGGAGAGCTCTTAGAGAAAAATGCACAGGCCTT
GAATAACATCTCTACCAATCTTGCTGCTCTTCAGGCGAGTTCTTTACTTG
TTTAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001005 | SANT/Myb |
|
