PvulFLAVERTChr01.1000264

Transcript Overview


Name	PvulFLAVERTChr01.1000264
Unique Name	drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr01.1000264
Type	mRNA
Organism	Phaseolus vulgaris (Common bean)
Sequence length	858

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr01	chromosome	Chr01:3927795..3931928 -	Phaseolus vulgaris cv. Flavert genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Phaseolus vulgaris cv. Flavert genome v1.0	2024-07-01
Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt TrEMBL	2024-08-19
Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt Swissprot	2024-08-19
Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs arabidopsis Araport11	2024-08-19
InterProScan Analysis for Phaseolus vulgaris cv. Flavert genome v1.0	2024-08-19

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
anpvfL0002	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anpvfL0365	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anpvfL0422	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
avjpvfL557	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anpvfL0860	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anpvfL0869	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
avjpvfL778	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
carpvfL300	Cicer arietinum cv. CDC Frontier genome v2.0	Cicer arietinum
carpvfL413	Cicer arietinum cv. CDC Frontier genome v2.0	Cicer arietinum
ccapvfL353	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
pspvfL605	Pisum sativum Cameor genome v1a	Pisum sativum
pspvfL622	Pisum sativum Cameor genome v1a	Pisum sativum
ccapvfL519	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
carpvfL668	Cicer arietinum cv. CDC Frontier genome v2.0	Cicer arietinum
pvfpvfR003	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
pvfpvfR018	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
pvfpvfR058	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
pvfvfhR013	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
pvfvfhR041	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
pvfvrvR030	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
pvfvrvR039	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
pvfvssR034	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
pvfvssR037	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
pvpvfL002	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
pvfvssR075	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
pvfvssR076	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
pvfvuR056	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
pvfvuR065	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
pvpvfL277	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
pvpvfL678	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris

Orthologs


Gene/Transcript	Assembly	Species
Vigun08g038300.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
rna-XM_014647182.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
Phvul.001G036000.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
PvulFLAVERTChr01.1000264	drPhaVulg.Flavert.1.0gene:PvulFLAVERTChr01.1000264	Phaseolus vulgaris	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
drPhaVulg.Flavert.1.0three_prime_UTR:PvulFLAVERTChr01.1000264.0	drPhaVulg.Flavert.1.0three_prime_UTR:PvulFLAVERTChr01.1000264.0	Phaseolus vulgaris	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr01.1000264.5	drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr01.1000264.5	Phaseolus vulgaris	exon
drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr01.1000264.4	drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr01.1000264.4	Phaseolus vulgaris	exon
drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr01.1000264.3	drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr01.1000264.3	Phaseolus vulgaris	exon
drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr01.1000264.2	drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr01.1000264.2	Phaseolus vulgaris	exon
drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr01.1000264.1	drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr01.1000264.1	Phaseolus vulgaris	exon
drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr01.1000264.utr12	drPhaVulg.Flavert.1.0exon:PvulFLAVERTChr01.1000264.utr12	Phaseolus vulgaris	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr01.1000264.5	drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr01.1000264.5	Phaseolus vulgaris	CDS
drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr01.1000264.4	drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr01.1000264.4	Phaseolus vulgaris	CDS
drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr01.1000264.3	drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr01.1000264.3	Phaseolus vulgaris	CDS
drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr01.1000264.2	drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr01.1000264.2	Phaseolus vulgaris	CDS
drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr01.1000264.1	drPhaVulg.Flavert.1.0CDS:PvulFLAVERTChr01.1000264.1	Phaseolus vulgaris	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
drPhaVulg.Flavert.1.0five_prime_UTR:PvulFLAVERTChr01.1000264.10	drPhaVulg.Flavert.1.0five_prime_UTR:PvulFLAVERTChr01.1000264.10	Phaseolus vulgaris	five_prime_UTR
drPhaVulg.Flavert.1.0five_prime_UTR:PvulFLAVERTChr01.1000264.12	drPhaVulg.Flavert.1.0five_prime_UTR:PvulFLAVERTChr01.1000264.12	Phaseolus vulgaris	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr01.1000264	drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr01.1000264	Phaseolus vulgaris	polypeptide
drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr01.1000264	drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr01.1000264-protein	Phaseolus vulgaris	polypeptide

Homology

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy TrEMBL (2024)
Match: tr|A0AA86SU97|A0AA86SU97_9FABA (Uncharacterized protein OS=Sphenostylis stenocarpa OX=92480 GN=AYBTSS11_LOCUS24940 PE=4 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 8.941e-63
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98
            MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH
Sbjct:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy TrEMBL (2024)
Match: tr|V7CVQ9|V7CVQ9_PHAVU (U6 snRNA-associated Sm-like protein LSm8 OS=Phaseolus vulgaris OX=3885 GN=LSM8 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 8.941e-63
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98
            MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH
Sbjct:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy TrEMBL (2024)
Match: tr|A0A151S2P8|A0A151S2P8_CAJCA (U6 snRNA-associated Sm-like protein LSm8 OS=Cajanus cajan OX=3821 GN=LSM8 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 8.941e-63
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98
            MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH
Sbjct:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy TrEMBL (2024)
Match: tr|A0A8B8L8F0|A0A8B8L8F0_ABRPR (U6 snRNA-associated Sm-like protein LSm8 OS=Abrus precatorius OX=3816 GN=LOC113863202 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 8.941e-63
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98
            MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH
Sbjct:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4D6NBE6|A0A4D6NBE6_VIGUN (U6 snRNA-associated Sm-like protein LSm8 OS=Vigna unguiculata OX=3917 GN=LSM8 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 3.126e-62
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0

Query:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98
            MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDS+LDLSKLRAHPLKPVIH
Sbjct:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0S3RPK9|A0A0S3RPK9_PHAAN (U6 snRNA-associated Sm-like protein LSm8 OS=Vigna angularis var. angularis OX=157739 GN=Vigan.03G253900 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 3.126e-62
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0

Query:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98
            MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDS+LDLSKLRAHPLKPVIH
Sbjct:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy TrEMBL (2024)
Match: tr|A0A0L9V1W8|A0A0L9V1W8_PHAAN (U6 snRNA-associated Sm-like protein LSm8 OS=Phaseolus angularis OX=3914 GN=LSM8 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 3.126e-62
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0

Query:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98
            MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDS+LDLSKLRAHPLKPVIH
Sbjct:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy TrEMBL (2024)
Match: tr|A0A9D4ZV97|A0A9D4ZV97_PEA (U6 snRNA-associated Sm-like protein LSm8 OS=Pisum sativum OX=3888 GN=LSM8 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 3.126e-62
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0

Query:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98
            MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDS+LDLSKLRAHPLKPVIH
Sbjct:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy TrEMBL (2024)
Match: tr|A0A1S3U9G2|A0A1S3U9G2_VIGRR (U6 snRNA-associated Sm-like protein LSm8 OS=Vigna radiata var. radiata OX=3916 GN=LOC106763024 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 3.126e-62
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0

Query:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98
            MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDS+LDLSKLRAHPLKPVIH
Sbjct:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSNLDLSKLRAHPLKPVIH 98

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy TrEMBL (2024)
Match: tr|A0A4P1QSD4|A0A4P1QSD4_LUPAN (U6 snRNA-associated Sm-like protein LSm8 OS=Lupinus angustifolius OX=3871 GN=LSM8 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.450e-62
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0

Query:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98
            MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDE+LDSSLDLSKLRAHPLKPVIH
Sbjct:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEELDSSLDLSKLRAHPLKPVIH 98

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q8VYI0|LSM8_ARATH (Sm-like protein LSM8 OS=Arabidopsis thaliana OX=3702 GN=LSM8 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.026e-57
Identity = 85/98 (86.73%), Postives = 92/98 (93.88%), Query Frame = 0

Query:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98
            M+A  GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STKEGVQQ VLGLYIIRGDNI V+GELDE+LD+SLD SKLRAHPLKPV+H
Sbjct:    1 MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q5RCP3|LSM8_PONAB (U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii OX=9601 GN=LSM8 PE=3 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 3.496e-40
Identity = 58/94 (61.70%), Postives = 79/94 (84.04%), Query Frame = 0

Query:    5 PGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98
              LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++V+GE+DE+ DS+LDL  +RA PL  V H
Sbjct:    3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q6ZWM4|LSM8_MOUSE (U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus OX=10090 GN=Lsm8 PE=1 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 3.496e-40
Identity = 58/94 (61.70%), Postives = 79/94 (84.04%), Query Frame = 0

Query:    5 PGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98
              LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++V+GE+DE+ DS+LDL  +RA PL  V H
Sbjct:    3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy Swiss-Prot (2024)
Match: sp|O95777|LSM8_HUMAN (U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens OX=9606 GN=LSM8 PE=1 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 3.496e-40
Identity = 58/94 (61.70%), Postives = 79/94 (84.04%), Query Frame = 0

Query:    5 PGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98
              LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++V+GE+DE+ DS+LDL  +RA PL  V H
Sbjct:    3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q3ZCE0|LSM8_BOVIN (U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus OX=9913 GN=LSM8 PE=3 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 3.496e-40
Identity = 58/94 (61.70%), Postives = 79/94 (84.04%), Query Frame = 0

Query:    5 PGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98
              LE+ +++T++VIT+DGR IVG LKGFDQ  N+ILDESHERV+S+ +GV+Q+VLGLYI+RGDN++V+GE+DE+ DS+LDL  +RA PL  V H
Sbjct:    3 SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q1ZXD5|LSM8_DICDI (Probable U6 snRNA-associated Sm-like protein LSm8 OS=Dictyostelium discoideum OX=44689 GN=lsm8 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.634e-27
Identity = 42/92 (45.65%), Postives = 73/92 (79.35%), Query Frame = 0

Query:    7 LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98
            LES + + + V+T DGR+I+G L+G DQ  N++L++ HERVYS  EG++ + LG+++I+GD+++V+GE+D++LD  L+L ++ A P+KP++H
Sbjct:    4 LESYLKKQVLVLTADGRSIIGTLRGIDQTINVVLEKCHERVYSD-EGIEVIPLGVHLIKGDDVAVIGEVDDELDKKLNLKEIIAEPMKPIVH 94

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy Swiss-Prot (2024)
Match: sp|O74483|LSM8_SCHPO (U6 snRNA-associated Sm-like protein LSm8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=lsm8 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.546e-24
Identity = 39/92 (42.39%), Postives = 67/92 (72.83%), Query Frame = 0

Query:    7 LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98
            L   ++Q + VITNDGR ++G LKGFD  TN+IL +S ER+ S  + ++ + LG+Y++RG+N+++VG ++E+LDS ++ +K+R   +  V+H
Sbjct:    3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRGENVAMVGLVNEELDSEIEWTKIRGEAIPDVVH 94

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q54W83|LSM1_DICDI (Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium discoideum OX=44689 GN=lsm1 PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 9.926e-14
Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = 0

Query:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDED 78
            MS+G G E  VD+ + V+  DGR  +G+++ FDQ  NI+L ++ ER+Y   +      LGL+ IRGDN+ ++GE+D D
Sbjct:    1 MSSGLGDE--VDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIY-VGDCYSDKNLGLFFIRGDNVVILGEIDPD 75

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q945P8|LSM1A_ARATH (Sm-like protein LSM1A OS=Arabidopsis thaliana OX=3702 GN=LSM1A PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 2.402e-13
Identity = 30/70 (42.86%), Postives = 49/70 (70.00%), Query Frame = 0

Query:    7 LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELD 76
            L + +D+ + V+  DGR ++G+L+ FDQ  N +L+E++ERV    +    + LGLYIIRG+N+ ++GELD
Sbjct:   15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVI-VGDLYCDIPLGLYIIRGENVVLIGELD 83

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy Swiss-Prot (2024)
Match: sp|Q8LFL8|LSM1B_ARATH (Sm-like protein LSM1B OS=Arabidopsis thaliana OX=3702 GN=LSM1B PE=1 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.544e-12
Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 0

Query:    3 AGP-------GLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELD 76
            AGP        L S +D+ + V+  DGR ++G L+ FDQ  N +L+ + ERV    E    + LGLY+IRG+N+ ++GELD
Sbjct:    4 AGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGEQYCDIPLGLYVIRGENVVLIGELD 83

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. Araport11
Match: | (Symbols: AtLSM8, LSM8 | SM-like 8 | chr1:24434463-24435870 REVERSE LENGTH=98)

HSP 1 Score: 174.866 bits (442), Expect = 2.112e-58
Identity = 85/98 (86.73%), Postives = 92/98 (93.88%), Query Frame = 0

Query:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98
            M+A  GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STKEGVQQ VLGLYIIRGDNI V+GELDE+LD+SLD SKLRAHPLKPV+H
Sbjct:    1 MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98

[Close]

Query:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98
            M+A  GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STKEGVQQ VLGLYIIRGDNI V+GELDE+LD+SLD SKLRAHPLKPV+H
Sbjct:    1 MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. Araport11
Match: | (Symbols: AtLSM8, LSM8 | SM-like 8 | chr1:24434463-24435870 REVERSE LENGTH=141)

HSP 1 Score: 155.606 bits (392), Expect = 3.175e-50
Identity = 85/141 (60.28%), Postives = 92/141 (65.25%), Query Frame = 0

Query:    1 MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTK-------------------------------------------EGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH 98
            M+A  GLE+LVDQ ISVITNDGRNIVGVLKGFDQATNIILDESHERV+STK                                           EGVQQ VLGLYIIRGDNI V+GELDE+LD+SLD SKLRAHPLKPV+H
Sbjct:    1 MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKCHLFNRILRKLTQIFKIGLVLQFFVCMSGHVDTSLDKCSWIFLEGVQQHVLGLYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 141

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. Araport11
Match: | (Symbols: LSM1A | SM-like 1A | chr1:6608288-6609162 FORWARD LENGTH=128)

HSP 1 Score: 63.929 bits (154), Expect = 2.483e-14
Identity = 30/70 (42.86%), Postives = 49/70 (70.00%), Query Frame = 0

Query:    7 LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELD 76
            L + +D+ + V+  DGR ++G+L+ FDQ  N +L+E++ERV    +    + LGLYIIRG+N+ ++GELD
Sbjct:   15 LAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVI-VGDLYCDIPLGLYIIRGENVVLIGELD 83

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. Araport11
Match: | (Symbols: LSM1B | SM-like 1B | chr3:4667717-4668989 FORWARD LENGTH=128)

HSP 1 Score: 61.2326 bits (147), Expect = 2.627e-13
Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 0

Query:    3 AGP-------GLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELD 76
            AGP        L S +D+ + V+  DGR ++G L+ FDQ  N +L+ + ERV    E    + LGLY+IRG+N+ ++GELD
Sbjct:    4 AGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGEQYCDIPLGLYVIRGENVVLIGELD 83

[Close]

Query:    3 AGP-------GLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELD 76
            AGP        L S +D+ + V+  DGR ++G L+ FDQ  N +L+ + ERV    E    + LGLY+IRG+N+ ++GELD
Sbjct:    4 AGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGEQYCDIPLGLYVIRGENVVLIGELD 83

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. Araport11
Match: | (Symbols: LSM1B | SM-like 1B | chr3:4667717-4668800 FORWARD LENGTH=98)

HSP 1 Score: 58.9214 bits (141), Expect = 1.374e-12
Identity = 32/85 (37.65%), Postives = 51/85 (60.00%), Query Frame = 0

Query:    7 LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAH 91
            L S +D+ + V+  DGR ++G L+ FDQ  N +L+ + ERV    E    + LGLY+IRG+N+ ++G  +    S+ D S+LR  
Sbjct:   15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGEQYCDIPLGLYVIRGENVVLIGHGERRASSTYD-SRLRGR 97

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. Araport11
Match: | (Symbols: LSM1B | SM-like 1B | chr3:4668350-4668989 FORWARD LENGTH=118)

HSP 1 Score: 55.8398 bits (133), Expect = 3.155e-11
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 0

Query:   17 VITNDGRNIVGVLKGFDQATNIILDESHERVYSTKEGVQQLVLGLYIIRGDNISVVGELD 76
            V+  DGR ++G L+ FDQ  N +L+ + ERV    E    + LGLY+IRG+N+ ++GELD
Sbjct:   15 VLLRDGRKLMGTLRSFDQFANAVLEGACERVI-VGEQYCDIPLGLYVIRGENVVLIGELD 73

[Close]

BLAST of PvulFLAVERTChr01.1000264 vs. Araport11
Match: | (Symbols: LSM7, EMB2816 | EMBRYO DEFECTIVE 2816, SM-like 7 | chr2:1180306-1181256 FORWARD LENGTH=99)

HSP 1 Score: 43.8986 bits (102), Expect = 7.996e-7
Identity = 27/74 (36.49%), Postives = 37/74 (50.00%), Query Frame = 0

Query:    7 LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVY----STKEGVQQLVLGLYIIRGDNISVVGELD 76
            L   VD+ + V    GR + G LKG+DQ  N++LDE+ E V       K   Q   LGL + RG  + +V   D
Sbjct:   11 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRGTAVMLVSPTD 84

[Close]

Query:    7 LESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVY----STKEGVQQLVLGLYIIRGDNISVVGELD 76
            L   VD+ + V    GR + G LKG+DQ  N++LDE+ E V       K   Q   LGL + RG  + +V   D
Sbjct:   11 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRGTAVMLVSPTD 84

The following BLAST results are available for this feature:

BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy TrEMBL (2024)
BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy Swiss-Prot (2024)
BLAST of PvulFLAVERTChr01.1000264 vs. Araport11

BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy TrEMBL (2024)
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt TrEMBL)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
tr\|A0AA86SU97\|A0AA86SU97_9FABA	8.941e-63	100.00	Uncharacterized protein OS=Sphenostylis stenocarpa...	[more]
tr\|V7CVQ9\|V7CVQ9_PHAVU	8.941e-63	100.00	U6 snRNA-associated Sm-like protein LSm8 OS=Phaseo...	[more]
tr\|A0A151S2P8\|A0A151S2P8_CAJCA	8.941e-63	100.00	U6 snRNA-associated Sm-like protein LSm8 OS=Cajanu...	[more]
tr\|A0A8B8L8F0\|A0A8B8L8F0_ABRPR	8.941e-63	100.00	U6 snRNA-associated Sm-like protein LSm8 OS=Abrus ...	[more]
tr\|A0A4D6NBE6\|A0A4D6NBE6_VIGUN	3.126e-62	98.98	U6 snRNA-associated Sm-like protein LSm8 OS=Vigna ...	[more]
tr\|A0A0S3RPK9\|A0A0S3RPK9_PHAAN	3.126e-62	98.98	U6 snRNA-associated Sm-like protein LSm8 OS=Vigna ...	[more]
tr\|A0A0L9V1W8\|A0A0L9V1W8_PHAAN	3.126e-62	98.98	U6 snRNA-associated Sm-like protein LSm8 OS=Phaseo...	[more]
tr\|A0A9D4ZV97\|A0A9D4ZV97_PEA	3.126e-62	98.98	U6 snRNA-associated Sm-like protein LSm8 OS=Pisum ...	[more]
tr\|A0A1S3U9G2\|A0A1S3U9G2_VIGRR	3.126e-62	98.98	U6 snRNA-associated Sm-like protein LSm8 OS=Vigna ...	[more]
tr\|A0A4P1QSD4\|A0A4P1QSD4_LUPAN	3.450e-62	98.98	U6 snRNA-associated Sm-like protein LSm8 OS=Lupinu...	[more]

BLAST of PvulFLAVERTChr01.1000264 vs. ExPASy Swiss-Prot (2024)
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt Swissprot)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
sp\|Q8VYI0\|LSM8_ARATH	2.026e-57	86.73	Sm-like protein LSM8 OS=Arabidopsis thaliana OX=37...	[more]
sp\|Q5RCP3\|LSM8_PONAB	3.496e-40	61.70	U6 snRNA-associated Sm-like protein LSm8 OS=Pongo ...	[more]
sp\|Q6ZWM4\|LSM8_MOUSE	3.496e-40	61.70	U6 snRNA-associated Sm-like protein LSm8 OS=Mus mu...	[more]
sp\|O95777\|LSM8_HUMAN	3.496e-40	61.70	U6 snRNA-associated Sm-like protein LSm8 OS=Homo s...	[more]
sp\|Q3ZCE0\|LSM8_BOVIN	3.496e-40	61.70	U6 snRNA-associated Sm-like protein LSm8 OS=Bos ta...	[more]
sp\|Q1ZXD5\|LSM8_DICDI	1.634e-27	45.65	Probable U6 snRNA-associated Sm-like protein LSm8 ...	[more]
sp\|O74483\|LSM8_SCHPO	4.546e-24	42.39	U6 snRNA-associated Sm-like protein LSm8 OS=Schizo...	[more]
sp\|Q54W83\|LSM1_DICDI	9.926e-14	42.31	Probable U6 snRNA-associated Sm-like protein LSm1 ...	[more]
sp\|Q945P8\|LSM1A_ARATH	2.402e-13	42.86	Sm-like protein LSM1A OS=Arabidopsis thaliana OX=3...	[more]
sp\|Q8LFL8\|LSM1B_ARATH	2.544e-12	40.74	Sm-like protein LSM1B OS=Arabidopsis thaliana OX=3...	[more]

BLAST of PvulFLAVERTChr01.1000264 vs. Araport11
Analysis Date: 2024-08-19 (Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs arabidopsis Araport11)
Total hits: 10

Position :

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Match Name	E-value	Identity	Description
\|	2.112e-58	86.73	Symbols: AtLSM8, LSM8 \| SM-like 8 \| chr1:24434463-...	[more]
\|	2.112e-58	86.73	Symbols: AtLSM8, LSM8 \| SM-like 8 \| chr1:24434463-...	[more]
\|	3.175e-50	60.28	Symbols: AtLSM8, LSM8 \| SM-like 8 \| chr1:24434463-...	[more]
\|	2.483e-14	42.86	Symbols: LSM1A \| SM-like 1A \| chr1:6608288-6609162...	[more]
\|	2.627e-13	40.74	Symbols: LSM1B \| SM-like 1B \| chr3:4667717-4668989...	[more]
\|	2.627e-13	40.74	Symbols: LSM1B \| SM-like 1B \| chr3:4667717-4668989...	[more]
\|	1.374e-12	37.65	Symbols: LSM1B \| SM-like 1B \| chr3:4667717-4668800...	[more]
\|	3.155e-11	45.00	Symbols: LSM1B \| SM-like 1B \| chr3:4668350-4668989...	[more]
\|	7.996e-7	36.49	Symbols: LSM7, EMB2816 \| EMBRYO DEFECTIVE 2816, SM...	[more]
\|	7.996e-7	36.49	Symbols: LSM7, EMB2816 \| EMBRYO DEFECTIVE 2816, SM...	[more]

InterPro

Analysis Name: Blastp of Phaseolus vulgaris cv. Flavert v1.0 proteins vs UniProt TrEMBL
Date Performed: 2024-08-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	FUNFAM	G3DSA:2.30.30.100:FF:000035		coord: 6..97 e-value: 4.0E-58 score: 195.5
None	No IPR available	GENE3D	2.30.30.100		coord: 6..97 e-value: 8.6E-27 score: 95.3
IPR001163	Sm domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 7..73 e-value: 2.2E-15 score: 67.4
IPR044642	U6 snRNA-associated Sm-like protein Lsm1/8	PANTHER	PTHR15588	LSM1	coord: 6..96
IPR047575	Sm domain	PROSITE	PS52002	SM	coord: 2..78 score: 27.137638
IPR034103	Sm-like protein Lsm8	CDD	cd01727	LSm8	coord: 5..94 e-value: 1.92747E-47 score: 144.591
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 5..81

Analysis Name: InterProScan Analysis for Phaseolus vulgaris cv. Flavert genome v1.0
Date Performed: 2024-08-19

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	FUNFAM	G3DSA:2.30.30.100:FF:000035		coord: 6..97 e-value: 4.0E-58 score: 195.5
None	No IPR available	GENE3D	2.30.30.100		coord: 6..97 e-value: 8.6E-27 score: 95.3
IPR001163	Sm domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 7..73 e-value: 2.2E-15 score: 67.4
IPR044642	U6 snRNA-associated Sm-like protein Lsm1/8	PANTHER	PTHR15588	LSM1	coord: 6..96
IPR047575	Sm domain	PROSITE	PS52002	SM	coord: 2..78 score: 27.137638
IPR034103	Sm-like protein Lsm8	CDD	cd01727	LSm8	coord: 5..94 e-value: 1.92747E-47 score: 144.591
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 5..81

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr01:3927795..3931928-
coding sequence from alignment at Chr01:3927795..3931928-

mRNA sequence

>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr01.1000264 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr01.1000264; Name=PvulFLAVERTChr01.1000264; organism=Phaseolus vulgaris; type=mRNA; length=858bp
TTCTCACAAGAAATATTCGTGTTGTTTGTTGCCAAAGGGAAACTGCGAAA
CCAAAACCCTTCCTAAGACCCTGCCACCGTCACGCACGCCGTCCGCCGCC
GTGCTCTTTGTCGCCACCGACGCCGCGCGATTTCAGGTGTGAGAGTGTGT
TACCTAGCCAAAAAGCAAGATGTCAGCTGGGCCTGGACTTGAGTCTCTTG
TAGATCAGACAATTTCAGTCATTACAAATGATGGACGGAATATAGTGGGA
GTCCTGAAAGGTTTTGACCAGGCCACAAATATAATTCTTGATGAGTCCCA
TGAACGAGTTTATTCTACAAAGGAAGGTGTACAACAACTTGTTCTTGGTT
TATACATCATCAGGGGTGACAACATAAGTGTTGTTGGTGAACTGGATGAA
GATCTGGATTCTAGTCTGGATTTATCAAAACTTAGAGCTCATCCCTTGAA
ACCTGTCATCCATTGAGTGGAAATACTCTGTTTGGGTTTTTAATGAATGC
ATGTCTGCTGGGTGGAAAGGGTGAGTTTTGCGGCACTTTATACTCAAGTG
CGCTGTGAAACTCTTTAAGAATATGCATATAGCATAACTTTTCTGATATT
ATGATTCCATTAGTATGtaagttttgtcaaaacaaATTAATGAAACAAAT
TTGTGACTATCTGACGTGAAGAAACTGTCTTCTATTTGGTCATTAATACA
TAATGAAAAATGTTTCTTTCAATGCGAGCTATGTCTAATGGCGCTAAACA
AACGCATCTATGAAAAAATGCATTTACTGTTGTACCTATAAACAATGATT
ATATTTGTGAACAGGTGTGGTTTCTTATAATTGCAACTTTGAATGTATAC
TCCTGTTC

protein sequence of drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr01.1000264

>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr01.1000264 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr01.1000264; Name=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr01.1000264; organism=Phaseolus vulgaris; type=polypeptide; length=98bp
MSAGPGLESLVDQTISVITNDGRNIVGVLKGFDQATNIILDESHERVYST
KEGVQQLVLGLYIIRGDNISVVGELDEDLDSSLDLSKLRAHPLKPVIH

mRNA from alignment at Chr01:3927795..3931928-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr01.1000264 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr01.1000264; Name=PvulFLAVERTChr01.1000264; organism=Phaseolus vulgaris; type=mRNA; length=4134bp; location=Sequence derived from: Chr01:3927795..3931928- (Phaseolus vulgaris
TTCTCACAAGAAATATTCGTGTTGTTTGTTGCCAAAGGGAAACTGCGAAA
CCAAAACCCTTCCTAAGACCCTGCCACCGTCACGCACGCCGTCCGCCGCC
GTGCTCTTTGTCGCCACCGACGCCGCGCGATTTCAGGTTTTCCATTCTAA
GCTTCTTTTTCTCAGAATGCTTGCTATTTTTCTTTGTGGGCCGTTGTGCT
GTATCTATCAATTTCACTGTATACCTTTTCACTCTGTTTCTGCTTTAGCT
TTCTAGAGAATGCTTCTTCAACTGATTGCGCTATTAGATTCAGTGTAGAA
TATGTTCTTTCATCGATACCCCTTCCCTAATAGTTATGAAAAACGGTGTT
TGATTTAGTAGTCAGTTGGTGCCACTTTAGACACGTTAACTGACATTTTT
TAGGGTTTCTTTTTTCATTGAGGTAAACATAAACCCAATAATTACGAAAT
ACGTGTTCGTATATGTAGCAGCTAATGTGTATCTCAACAAAAAGGAGATG
TCCTGTGATCATTGTCCATGGAAGACGTGTTTACAGGGTAGGGGAGAGAG
TAGCAAAGGGGAGAACGGAAATTGGGTGAGGATTTGGTTTGGCATTTGCC
TTGGGGACAGAGTTCGCGTCTTGTAACTGTATTTGTTGTCTTCTTTTCTG
CATTGCCATTTTCTGTTTTTCCTGGTTTCTTTTCCTAAGCTGGAGTTATA
TTGCTGCTGTTAAGGAGTTGTTCTCCTAGAATATCATCTATTTCCTTTCA
TATACCACCAGTTTGTGGCATGCTTTTTTGCAAGGTTGCTCACGTTCAGA
CATACGTAGCATCTCCTCTTTGTTCCATCTTCTTGATCCCATAATTTCAA
GTCCAATTGGCTGTGCCATGGTATCTTGAACAAACAAATTCAACAGATTA
GAAGTAAACAAAATTTTTAGTTACTCTTCATGCTGTTCTCTCTAATCTCC
AGTTCTCCATTGTATTATGTTTGATGCCTCTGCCATTCTCTCATTTGTCC
TACCTCCGCAGTCCCAATCTGCGCTACCTGATTTTAGCTGGTTCTCAGTG
TACATTTGCGTTGCTTTAATTGATGTTTTGACATTAAAACTTGTACAGGT
GTGAGAGTGTGTTACCTAGCCAAAAAGCAAGATGTCAGCTGGGCCTGGAC
TTGAGTCTCTTGTAGATCGTAAGCCATCTATAAATATTTATGTTTTTCTT
TGATGTTTTATATTCTGTACATATCTATATTATTTACTGTGCTTATCAAT
GACAATTATTTTAGTTAATTAAGCATTGGGAACTAATTGTCCATCAAATT
TTGTTTCATCCATTTGTGAGATATGCTTTAAACCATGCTAGTAATTGCTA
TCCTTTACTGAATCTTTTGGTTGTTGACAGAGACAATTTCAGTCATTACA
AATGATGGACGGAATATAGTGGTATGCTTTTGTATATGATCAAAATTAGC
TTTTGTCAGTTTGTTGTGTTTTAGTAAGTGTCATTTCTCAAACTTCTAAT
TTCTATGTTTTTTTGTTCAGGGAGTCCTGAAAGGTTTTGACCAGGCCACA
AATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACAAAGGTATG
CTGAATGCAGTTGTAGAAACATTCCTTCAAAGATTAATGAGCCATAACTT
TAGTGAACTTTGACTTATAGCTTCAAGACTTAGTTCCTTAAAAATGGGCA
TTCTTACCGTTGAGGGTAAAGTAAGCCCATTTTTTACCCTTCAATGTTTT
AAAGGCTAAGATTGACCCTTTCTGTTATAATGTTCTGAAAATTATTAAAT
ATAAAACACATAAAACTTATCCCTATTGCCCACTAGTTCTCTCTATTAGA
TGACAAGCAAGGCTGTGCAGTATCAGATTTTGCATTAGGCAAAGGGCTAG
ATCCATGTCCACCATGCTAGATGTTATTAGATATACTTGAGAGTGGGGCA
CTTTATTCAAGACTAAGAAAGACCTTGCAAAACTGGTTTTGTAATGCAAA
CATTGACAAAAACCACAATATTTTTATCTTACTAGGTGATGTCTGTTGCA
TGAATTACACTACACCATTGGGTTTGGTTAAAAACCAAATTCTCAAAGAT
ACTATCAATCATGCGATTCCTGAGTAATTTCCTTCAATGTCCTTCTATCT
CTCCCTTCACCCCTTTTTGTTAATCATATTATATGCTCCGTCTCTAATAG
CCTTCTTTGAAAATGTCTGTTGAAATGGTATCTCTGATTTTACTAAGTAA
TTTCCTCTGTTCCTTATAATTGCAATATATATACTCACTTTTACACTTAA
GCAAAATCCCCTTTCGTTCTACAGTGCTTACTCCCAAAATTAAACTACTT
TTCATGACTCAAAACTTGTAATTTTTCGTCTATTTGATTGAAGAAAATTT
ACTGTCTTTGCATTTAATCAATGCTTCCACATTCCACTGATACTTTTGTC
TGTTATTATGTTATGAACACTGTACTTTCCCCTTTGAATTCGAGGACAAG
AACCTCCTAAAAGAAAGATAAATGTTGAAATACTTCTCTGCCTTTTATTC
ATTCATATCAGTGTTTATATAGAAAGAGAATTCCAATACATCTATTGGCC
CTCTGCAGCAAGGAAGGGAATAACAGGATTGGTAATAATGGAATGAAATT
GACAGCTTGCTGAGAAATCTTAAATAACGAACTCAGAAAATAAATCTAAT
ATTGTAGGAATTAGATCTTATTTCTTCCAATTTAGTCTCTGAAATGCACA
GGTTTGGAGATTTTCCTTTTGAACCTGTTGACTTTGGCCCTGATGAAGCT
TGGGCGTTCTTTAGCGTTTCCTGAATTCCTGAGTTCTTCTCAATGTTGGG
CTCCCTATCATATTATTGCTACTTCTATCTTGAAAATGATCTCTTGTCGC
TGCCTCAGCAATGGTTGCATTTTTTTCTTCTATATTTTATTGTGCTCTTC
TCTATTTTATATATACTCAGCATCTATCTTGTTCTCCATAACTGGATCCT
TGAGTACAAGTGATTTTGTGAGTGAGGGAAGTAGAGTGCAAGGTGAAGAA
AAATGAAATGGAAGAGGAATTGTTAGATTAATGATGAGTAAAACAAACTA
AAGGCTTTTGTTCTAGGGGGTTCGCGAGTCTATTGCTTGGTTGTCTCCTC
CTGAAGCATTGTGGCTTTACTAATCGTTAACAGGTGGAATGGTATAATCT
TCGTATACATGCATACATACATAATGTATGTCTTAGATTAAAAAAAATAA
AAGTAACATTACAATTTAAAGTGTTGATCTAAATTTAAACTTGGACAGTA
AATATCGGATTACTTCCTCTAAATTTAGATTTTAGAAAAGTCAATCCCTA
GCTTTGAACTATAGATTGCTGTACCAGGAATTACTAATTCTTTGGTATTT
TTGCTATAATCTCTCCCCCTCCGTAAATCTTTGCTTCATTAAAATACTGT
TTTTGTCTTCTTGATAGTTCGTGTTTCTAACTGCAGGAAGGTGTACAACA
ACTTGTTCTTGGTTTATACATCATCAGGGGTGACAACATGTATGATCCTT
ACTCCATTTTTCAATCTGTTCATCATACAGATTTCATATTGGGGCACTAT
ATTTACATGCCCTATAATATATGTATGATGGTTTCCCTTTGGTCATTGCA
GAAGTGTTGTTGGTGAACTGGATGAAGATCTGGATTCTAGTCTGGATTTA
TCAAAACTTAGAGCTCATCCCTTGAAACCTGTCATCCATTGAGTGGAAAT
ACTCTGTTTGGGTTTTTAATGAATGCATGTCTGCTGGGTGGAAAGGGTGA
GTTTTGCGGCACTTTATACTCAAGTGCGCTGTGAAACTCTTTAAGAATAT
GCATATAGCATAACTTTTCTGATATTATGATTCCATTAGTATGTAAGTTT
TGTCAAAACAAATTAATGAAACAAATTTGTGACTATCTGACGTGAAGAAA
CTGTCTTCTATTTGGTCATTAATACATAATGAAAAATGTTTCTTTCAATG
CGAGCTATGTCTAATGGCGCTAAACAAACGCATCTATGAAAAAATGCATT
TACTGTTGTACCTATAAACAATGATTATATTTGTGAACAGGTGTGGTTTC
TTATAATTGCAACTTTGAATGTATACTCCTGTTC

Coding sequence (CDS) from alignment at Chr01:3927795..3931928-

>drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr01.1000264 ID=drPhaVulg.Flavert.1.0mRNA:PvulFLAVERTChr01.1000264; Name=PvulFLAVERTChr01.1000264; organism=Phaseolus vulgaris; type=CDS; length=297bp; location=Sequence derived from: Chr01:3927795..3931928- (Phaseolus vulgaris
ATGTCAGCTGGGCCTGGACTTGAGTCTCTTGTAGATCAGACAATTTCAGT
CATTACAAATGATGGACGGAATATAGTGGGAGTCCTGAAAGGTTTTGACC
AGGCCACAAATATAATTCTTGATGAGTCCCATGAACGAGTTTATTCTACA
AAGGAAGGTGTACAACAACTTGTTCTTGGTTTATACATCATCAGGGGTGA
CAACATAAGTGTTGTTGGTGAACTGGATGAAGATCTGGATTCTAGTCTGG
ATTTATCAAAACTTAGAGCTCATCCCTTGAAACCTGTCATCCATTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	Sm_dom_euk/arc
IPR044642	PTHR15588
IPR047575	Sm
IPR034103	Lsm8
IPR010920	LSM_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005688	U6 snRNP
GO:0046540	U4/U6 x U5 tri-snRNP complex

Vocabulary: **Biological Process**
Term	Definition
GO:0000398	mRNA splicing, via spliceosome

Search form

PvulFLAVERTChr01.1000264