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Transcript Overview
Name | Ca_09560.1 |
Unique Name | Ca_09560.1_ICC4958_v2 |
Type | mRNA |
Organism | Cicer arietinum (chickpea) |
Sequence length | 3755 |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Ca_09560.1.utr5p1 | Ca_09560.1.utr5p1_ICC4958_v2 | Cicer arietinum | five_prime_UTR |
Ca_09560.1.utr5p2 | Ca_09560.1.utr5p2_ICC4958_v2 | Cicer arietinum | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Ca_09560.1.cds1 | Ca_09560.1.cds1_ICC4958_v2 | Cicer arietinum | CDS |
Ca_09560.1.cds2 | Ca_09560.1.cds2_ICC4958_v2 | Cicer arietinum | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Ca_09560.1.utr3p1 | Ca_09560.1.utr3p1_ICC4958_v2 | Cicer arietinum | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Ca_09560.1_ICC4958_v2 | Ca_09560.1_ICC4958_v2 | Cicer arietinum | polypeptide |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: C. arietinum ICC 4958, v2.0 (desi)
Date Performed: 2019-05-21
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR019320 | BLOC-1-related complex subunit 8 | PFAM | PF10167 | BORCS8 | coord: 4..111 e-value: 5.8E-25 score: 87.4 |
IPR019320 | BLOC-1-related complex subunit 8 | PANTHER | PTHR21146 | MEF2B PROTEIN | coord: 1..265 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 251..284 |
None | No IPR available | PANTHER | PTHR21146:SF2 | | coord: 1..265 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >Ca_09560.1_ICC4958_v2 ID=Ca_09560.1_ICC4958_v2; Name=Ca_09560.1; organism=Cicer arietinum; type=mRNA; length=3755bp ATGAAGTTGGGTGTGTGTCTGTTACTGTCGTGTGTGGCACTGTGTTGTGT TGCGGACAAAAACCACAACAACCGAAGAGAAGGTTCCTGTGCTCTCTCTC TCTGTGTGCGCGCGCGCTTCCATCACCATCTTATCTTCACTCCTGGGTAG GTCTTCTCCTTCAAATCACAAAAATGCTTTCTCTATCCTTTTCACCAAAC CCCCATTTCTTATCGCTGAAATTACCGAACAGGGTATTCGAATTTATCTC CTTTTGTTCCCATGTTATCCTTTTGCTTTATTATAAGAGCTTAACTTTGC TCATTTATCAACATCAAAGGTCGCCTTCTTAATTTATTATTAATTTTATT TTAAACTAAGGATCTCTTTACTAGTTGAATTTTGGAAGGGAAGACCTAAA TCTATATTTTAATATACATTTGATATTTTAAAATCAAAATCCTCTAAAGA CCAACTCGCAAACAAACCTAAAGGTTGCTTTTTTATTTCAAATGCTTATA ATATACTTTATACTTTATCTGAATGTGGTGTAAATAAATTGCTTCTAAAA CAGTGAAACTTAATTGACTTTGATACCGTCCCTATGGTCTGTGTGTTATA TAAGCTGATTTTTTGTTAATTTTCCTTCATCTTCTACAATGATGTCAAAT AGTCAAACAGTGGCTATAGTGACCCTCTAGTATAGTGGAATTTGAACAAA TTGTTATTGTTATGAGATATGCTATTTAGAATGAAGTGTTGTCAAATAGC GTCTATAACAATATTTTATAGCATTATAGCGTAATAGAATTTGAACAAAC CACAGTTTTTTGCAATACGCGATTGACATGACTGGTCTCCTATATTTATT ATTTGGTGGTTTTATTGTAGATACTAGTTTCTTGACTTCTACAAGTGTGC ATTATCTGTTTCATTTTCTATTTAAGTGTATTTGATTGAGGCAGAATTAT TTGCTCTTACAGACATGGGATATGATTTGCAGGTGTTTTCTGACTGGTTT TCTGAAGCTGTTTCCCTAATTGATGTGCTGAGAGGTTAGATGTTTTGTCC TCTTTTAACCCTTTTGGCATTGCTCGTTTTCTTTTTAGTTTATGGTTTAT AAGAGTATGAATAGAGCAACAGATTCAAAGAGTAGTATGATAGTTTCACA ATAGTGTCTGGATGGTTCCCATTTTTGTTAATGGAAAGATGTTTGTTTCT GGGAGTCTTCTGTATTGCATGATGTCCTTATTTGCTGGTTCTATTTTTCC TTAGTTTTCCATTTCTTTTGGAATTTCCAATTCTCTTAGAACCTTCATGG TCAGGAACCTTATGATTTGGCATCTTTGTTTGACTTTCTAGACTCCTTTT ATAATAACAAATACTCTTATTCACAAAACCAACGAATACATCGTATCTTC CGTTCCTTTACTTTATCAACAAATATTAATTCCAAAAATTGAAAAAATAT AAAAGGGTTTTTGGTGGAAACCACACTGTTGTAGTGGTTTAACGAATATT CATTCGTACTAACCATCATTTCCCTTATATAAATACATCTCTCTACGTGT AGTCAAGCCTGTACCCTCATTCATTCGGAACCAAAACCACAACTCTCTTT GGTGCTAATGTTTTCTTATCTCTCCTCCATTCAGTTCCATTTTTTTATTC GGATTAAAGGTCACCATTTAATTTTGGTTCCTTTATTTGTCTATACATGT CATATTTCCATTTCGTTTTGTTATATCTGACTACTAGTCACAGCTTCACT CCTCCATTAGTTCAATGTTACACATAAATGATGCACCAATTCTAGGTATA TGTCAATTGGTGTTGTTTTGAAGTGTAAGAATTTTGATTTCAAAGTATCA GCTCAATATCACAAGAGAGAGAGCTAACGTTCTTAAGGAATTTGTTCATG TATAGATATATAGGTGTTTGAAACTTTGAATTAACATTTTCAAATTAAAC TTAATCAAAGGTTACCGTTTTAAATTTTTCTCCCATCATTCCACTCAAAC GAGGAACCCTATCAGCTCAAAATTTATTTCTCATTATAACCAAACAGTCA AAGTGCAAAGGTTAACATATGTTTTATAAAAATTGCACATATCTTGCTTG ATGTAGCACTGGAAAATTAGAGATACCCAGCATTTTCTTTTCAGAATGTA CTTTTTATCTGTTATCAGTTGAAGTATAGAATGCACATTTCATTATATAT AGTACAGTCCATTTCAATAAAACTGTTAATCTGCTGCAATATTCTTTAGG ATTTTGGAGCGAACCTAAGAACTAAATGTATCAATCTCATGGTTGTCTAA ATTAGCCTTTTGTATCAGCAAATGTTGATTGAGCTTATTAGTCTCTTTTG TCTTCCCCTAGTTATCTAACTTTGTTTTTTTCTTGGGCAATGTCAATGAT GAACTATACTGTGTCTTTACGAAGATGCATGAATTCTCTACTGTTGATGG TTTTGTGGAAATAAGTGAATGCATGGCGGAGATGATTAAATTTGTGGCTA ACGAACCATCTGTGGGGCTTTACTTTATCCAACAACATGCTCAAAGTGCA GTGCCCATTGTTGTCAAAGCTAACAAAAATATTGTTGAAAAGGTTCACGA AACAACTTTGCACACCGAAGACTTGGCGGACTCTATTACAGCGGTTCGAT CAATGAAAGAGTGTGGATTTTCCATAGTCGACGAGATGATAGTTGACATC AACAAATCTCTGGAAATCATGAAAACGAAACAACCAAAAAGAAGGTTAAT CCATTCATCAACATCAACACCAAAATCCCAAATAGAGAGAACTACTTTTT GGGGTAATCATGCATTTTATCCTCAGGAAGGTGACGATAAAAAGAGTAAC TATTTCTCAAATGTTATAAAGTCAGCAAAACAGAAGATTAACAGTCTCAA GTTGCAACAGCCTGATGGTAAGGGGTCATTAAGTTCGGAGGAAGAGAAGT CAGAATATCTTGATTTGCCATTTTCAATCACATCAGCCAGCATAACTTCA TCTTTACAGGTCAGCACTGAACGTAATGAGTTGCCTATAACAAGCCAAGT TGAAGATGAGTCTCAAAATGAACAGACTAATGTTAGTGATATTAGCATCA AGTTGTTGTCAGTATCAGAAAGATATGACGACTTCAAAGCTAATAAAGAA GCTAAACTAGAGGAGTGGCTTGAAGGAACTAGCAACCATGACGATTATTG TGATACAGATGGTGAAAAAAGGGGTTAGTTTGGTTACACTTGATAAAAAG CTTCAGCCGGTGTATAATAATGCATATTATTTAACTATCTCCAAATAGTG GTTATACGTTAAACAATCTGTAATGCTGAAACATATTCTTTGAAGAAACA TGATACTGTATGGGATAATCAACTTATCATACTGCATTCCTTTTTCCTGA AGCTTCAGTATTGATTTCTGTATATTTGACAGGTAAGAAGCTTGTCCCGA GCGATGAGAAGATAAAAGATGGAGACAGTGGCTTCTAAGGTCATGTACTA ATGCAAGATAAGTTTGATCGACACATGTTCTCAATTTCAAATGATTAGAT TTTAGTCTGTGAAGTTTTGAGAAGATTGAAACCTTGTAATTGCAAACTCG AACTTGTTACAAAATATTGCAGCTGTAAATTGTAATGTTCAGGGGTCCGT GTTTACTGGTAGACACCACAATTGCAACAAAACTGACCCTGAAGATATTT TTTTGCAATTGCAGACCCTGTTACAGATTGATTGGGTTCTATTTGTTTTC CCCTT back to topprotein sequence of Ca_09560.1_ICC4958_v2 >Ca_09560.1_ICC4958_v2 ID=Ca_09560.1_ICC4958_v2; Name=Ca_09560.1_ICC4958_v2; organism=Cicer arietinum; type=polypeptide; length=284bp MHEFSTVDGFVEISECMAEMIKFVANEPSVGLYFIQQHAQSAVPIVVKAN KNIVEKVHETTLHTEDLADSITAVRSMKECGFSIVDEMIVDINKSLEIMK TKQPKRRLIHSSTSTPKSQIERTTFWGNHAFYPQEGDDKKSNYFSNVIKS AKQKINSLKLQQPDGKGSLSSEEEKSEYLDLPFSITSASITSSLQVSTER NELPITSQVEDESQNEQTNVSDISIKLLSVSERYDDFKANKEAKLEEWLE GTSNHDDYCDTDGEKRGKKLVPSDEKIKDGDSGF back to topmRNA from alignment at Ca_LG_4:19487927..19491681+ Legend: five_prime_UTRexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Ca_09560.1_ICC4958_v2 ID=Ca_09560.1_ICC4958_v2; Name=Ca_09560.1; organism=Cicer arietinum; type=mRNA; length=3755bp; location=Sequence derived from: Ca_LG_4:19487927..19491681+ (Cicer arietinum ATGAAGTTGGGTGTGTGTCTGTTACTGTCGTGTGTGGCACTGTGTTGTGT
TGCGGACAAAAACCACAACAACCGAAGAGAAGGTTCCTGTGCTCTCTCTC
TCTGTGTGCGCGCGCGCTTCCATCACCATCTTATCTTCACTCCTGGGTAG
GTCTTCTCCTTCAAATCACAAAAATGCTTTCTCTATCCTTTTCACCAAAC
CCCCATTTCTTATCGCTGAAATTACCGAACAGGGTATTCGAATTTATCTC
CTTTTGTTCCCATGTTATCCTTTTGCTTTATTATAAGAGCTTAACTTTGC
TCATTTATCAACATCAAAGGTCGCCTTCTTAATTTATTATTAATTTTATT
TTAAACTAAGGATCTCTTTACTAGTTGAATTTTGGAAGGGAAGACCTAAA
TCTATATTTTAATATACATTTGATATTTTAAAATCAAAATCCTCTAAAGA
CCAACTCGCAAACAAACCTAAAGGTTGCTTTTTTATTTCAAATGCTTATA
ATATACTTTATACTTTATCTGAATGTGGTGTAAATAAATTGCTTCTAAAA
CAGTGAAACTTAATTGACTTTGATACCGTCCCTATGGTCTGTGTGTTATA
TAAGCTGATTTTTTGTTAATTTTCCTTCATCTTCTACAATGATGTCAAAT
AGTCAAACAGTGGCTATAGTGACCCTCTAGTATAGTGGAATTTGAACAAA
TTGTTATTGTTATGAGATATGCTATTTAGAATGAAGTGTTGTCAAATAGC
GTCTATAACAATATTTTATAGCATTATAGCGTAATAGAATTTGAACAAAC
CACAGTTTTTTGCAATACGCGATTGACATGACTGGTCTCCTATATTTATT
ATTTGGTGGTTTTATTGTAGATACTAGTTTCTTGACTTCTACAAGTGTGC
ATTATCTGTTTCATTTTCTATTTAAGTGTATTTGATTGAGGCAGAATTAT
TTGCTCTTACAGACATGGGATATGATTTGCAGGTGTTTTCTGACTGGTTT
TCTGAAGCTGTTTCCCTAATTGATGTGCTGAGAGGTTAGATGTTTTGTCC
TCTTTTAACCCTTTTGGCATTGCTCGTTTTCTTTTTAGTTTATGGTTTAT
AAGAGTATGAATAGAGCAACAGATTCAAAGAGTAGTATGATAGTTTCACA
ATAGTGTCTGGATGGTTCCCATTTTTGTTAATGGAAAGATGTTTGTTTCT
GGGAGTCTTCTGTATTGCATGATGTCCTTATTTGCTGGTTCTATTTTTCC
TTAGTTTTCCATTTCTTTTGGAATTTCCAATTCTCTTAGAACCTTCATGG
TCAGGAACCTTATGATTTGGCATCTTTGTTTGACTTTCTAGACTCCTTTT
ATAATAACAAATACTCTTATTCACAAAACCAACGAATACATCGTATCTTC
CGTTCCTTTACTTTATCAACAAATATTAATTCCAAAAATTGAAAAAATAT
AAAAGGGTTTTTGGTGGAAACCACACTGTTGTAGTGGTTTAACGAATATT
CATTCGTACTAACCATCATTTCCCTTATATAAATACATCTCTCTACGTGT
AGTCAAGCCTGTACCCTCATTCATTCGGAACCAAAACCACAACTCTCTTT
GGTGCTAATGTTTTCTTATCTCTCCTCCATTCAGTTCCATTTTTTTATTC
GGATTAAAGGTCACCATTTAATTTTGGTTCCTTTATTTGTCTATACATGT
CATATTTCCATTTCGTTTTGTTATATCTGACTACTAGTCACAGCTTCACT
CCTCCATTAGTTCAATGTTACACATAAATGATGCACCAATTCTAGGTATA
TGTCAATTGGTGTTGTTTTGAAGTGTAAGAATTTTGATTTCAAAGTATCA
GCTCAATATCACAAGAGAGAGAGCTAACGTTCTTAAGGAATTTGTTCATG
TATAGATATATAGGTGTTTGAAACTTTGAATTAACATTTTCAAATTAAAC
TTAATCAAAGGTTACCGTTTTAAATTTTTCTCCCATCATTCCACTCAAAC
GAGGAACCCTATCAGCTCAAAATTTATTTCTCATTATAACCAAACAGTCA
AAGTGCAAAGGTTAACATATGTTTTATAAAAATTGCACATATCTTGCTTG
ATGTAGCACTGGAAAATTAGAGATACCCAGCATTTTCTTTTCAGAATGTA
CTTTTTATCTGTTATCAGTTGAAGTATAGAATGCACATTTCATTATATAT
AGTACAGTCCATTTCAATAAAACTGTTAATCTGCTGCAATATTCTTTAGG
ATTTTGGAGCGAACCTAAGAACTAAATGTATCAATCTCATGGTTGTCTAA
ATTAGCCTTTTGTATCAGCAAATGTTGATTGAGCTTATTAGTCTCTTTTG
TCTTCCCCTAGTTATCTAACTTTGTTTTTTTCTTGGGCAATGTCAATGAT
GAACTATACTGTGTCTTTACGAAGATGCATGAATTCTCTACTGTTGATGG
TTTTGTGGAAATAAGTGAATGCATGGCGGAGATGATTAAATTTGTGGCTA
ACGAACCATCTGTGGGGCTTTACTTTATCCAACAACATGCTCAAAGTGCA
GTGCCCATTGTTGTCAAAGCTAACAAAAATATTGTTGAAAAGGTTCACGA
AACAACTTTGCACACCGAAGACTTGGCGGACTCTATTACAGCGGTTCGAT
CAATGAAAGAGTGTGGATTTTCCATAGTCGACGAGATGATAGTTGACATC
AACAAATCTCTGGAAATCATGAAAACGAAACAACCAAAAAGAAGGTTAAT
CCATTCATCAACATCAACACCAAAATCCCAAATAGAGAGAACTACTTTTT
GGGGTAATCATGCATTTTATCCTCAGGAAGGTGACGATAAAAAGAGTAAC
TATTTCTCAAATGTTATAAAGTCAGCAAAACAGAAGATTAACAGTCTCAA
GTTGCAACAGCCTGATGGTAAGGGGTCATTAAGTTCGGAGGAAGAGAAGT
CAGAATATCTTGATTTGCCATTTTCAATCACATCAGCCAGCATAACTTCA
TCTTTACAGGTCAGCACTGAACGTAATGAGTTGCCTATAACAAGCCAAGT
TGAAGATGAGTCTCAAAATGAACAGACTAATGTTAGTGATATTAGCATCA
AGTTGTTGTCAGTATCAGAAAGATATGACGACTTCAAAGCTAATAAAGAA
GCTAAACTAGAGGAGTGGCTTGAAGGAACTAGCAACCATGACGATTATTG
TGATACAGATGGTGAAAAAAGGGGTTAGTTTGGTTACACTTGATAAAAAG
CTTCAGCCGGTGTATAATAATGCATATTATTTAACTATCTCCAAATAGTG
GTTATACGTTAAACAATCTGTAATGCTGAAACATATTCTTTGAAGAAACA
TGATACTGTATGGGATAATCAACTTATCATACTGCATTCCTTTTTCCTGA
AGCTTCAGTATTGATTTCTGTATATTTGACAGGTAAGAAGCTTGTCCCGA
GCGATGAGAAGATAAAAGATGGAGACAGTGGCTTCTAAGGTCATGTACTA
ATGCAAGATAAGTTTGATCGACACATGTTCTCAATTTCAAATGATTAGAT
TTTAGTCTGTGAAGTTTTGAGAAGATTGAAACCTTGTAATTGCAAACTCG
AACTTGTTACAAAATATTGCAGCTGTAAATTGTAATGTTCAGGGGTCCGT
GTTTACTGGTAGACACCACAATTGCAACAAAACTGACCCTGAAGATATTT
TTTTGCAATTGCAGACCCTGTTACAGATTGATTGGGTTCTATTTGTTTTC
CCCTT back to topCoding sequence (CDS) from alignment at Ca_LG_4:19487927..19491681+ >Ca_09560.1_ICC4958_v2 ID=Ca_09560.1_ICC4958_v2; Name=Ca_09560.1; organism=Cicer arietinum; type=CDS; length=855bp; location=Sequence derived from: Ca_LG_4:19487927..19491681+ (Cicer arietinum ATGCATGAATTCTCTACTGTTGATGGTTTTGTGGAAATAAGTGAATGCAT GGCGGAGATGATTAAATTTGTGGCTAACGAACCATCTGTGGGGCTTTACT TTATCCAACAACATGCTCAAAGTGCAGTGCCCATTGTTGTCAAAGCTAAC AAAAATATTGTTGAAAAGGTTCACGAAACAACTTTGCACACCGAAGACTT GGCGGACTCTATTACAGCGGTTCGATCAATGAAAGAGTGTGGATTTTCCA TAGTCGACGAGATGATAGTTGACATCAACAAATCTCTGGAAATCATGAAA ACGAAACAACCAAAAAGAAGGTTAATCCATTCATCAACATCAACACCAAA ATCCCAAATAGAGAGAACTACTTTTTGGGGTAATCATGCATTTTATCCTC AGGAAGGTGACGATAAAAAGAGTAACTATTTCTCAAATGTTATAAAGTCA GCAAAACAGAAGATTAACAGTCTCAAGTTGCAACAGCCTGATGGTAAGGG GTCATTAAGTTCGGAGGAAGAGAAGTCAGAATATCTTGATTTGCCATTTT CAATCACATCAGCCAGCATAACTTCATCTTTACAGGTCAGCACTGAACGT AATGAGTTGCCTATAACAAGCCAAGTTGAAGATGAGTCTCAAAATGAACA GACTAATGTTAGTGATATTAGCATCAAGTTGTTGTCAGTATCAGAAAGAT ATGACGACTTCAAAGCTAATAAAGAAGCTAAACTAGAGGAGTGGCTTGAA GGAACTAGCAACCATGACGATTATTGTGATACAGATGGTGAAAAAAGGGG TAAGAAGCTTGTCCCGAGCGATGAGAAGATAAAAGATGGAGACAGTGGCT TCTAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term | Definition |
IPR019320 | BORCS8 |
|