Cicer arietinum

Overview
GenusCicer
Speciesarietinum
Common Namechickpea
AbbreviationC. arietinum
PloidyDiploid
Chromosome Number2n=16
Genome Size~740 Mbp
Available Markers69,931
Available Maps81
Available QTLs1,310
Available MTLs19
Available Traits100
Available Genomes3
Libraries
The following libraries are associated with this organism.
Library NameType
LIBEST_025714 Fusarium oxysporum f. sp ciceris infected chickpea roots (C. arietinum)cDNA
LIBEST_026413 Chickpea drought stressed cDNA SSH library AS2cDNA
LIBEST_026412 Chickpea drought stressed cDNA SSH library AS1cDNA
LIBEST_026410 Chickpea drought stressed cDNA SSH library AR1cDNA
LIBEST_026409 Chickpea drought stressed cDNA SSH library AB2cDNA
LIBEST_026408 Chickpea drought stressed cDNA SSH library AB1cDNA
LIBEST_026411 Chickpea drought stressed cDNA SSH library AR2cDNA
LIBEST_026415 Chickpea drought stressed cDNA SSH library BULK2cDNA
LIBEST_026414 Chickpea drought stressed cDNA SSH library BULK1cDNA
LIBEST_026619 TDZ treated Chickpea SSH librarycDNA
LIBEST_026534 ICC 4958 drought stressed root cDNA librarycDNA
LIBEST_026535 Cicer arietinum Suppressive substractive hybridization librarycDNA
LIBEST_023772 Wilt resistant chickpea leave library (JG 315)cDNA
LIBEST_024969 Early immune responsive suppression subtracted cDNA libraries of Chickpea (Cicer arietinum cv. WR-315) wiltcDNA
LIBEST_024968 Early immune responsive suppression subtracted cDNA libraries of Chickpea (Cicer arietinum cv. JG-62) wiltcDNA
LIBEST_024780 ICC1882 PEG induced drought cDNA librarycDNA
LIBEST_024786 JG11 Salinity-stressed chickpea root cDNA librarycDNA
LIBEST_024783 ICC4958 Slow drought stresses root cDNA librarycDNA
LIBEST_024781 ICC4958 dehydration stressed root cDNA librarycDNA
LIBEST_024785 ICCV2 Salinity-stressed chickpea root cDNA librarycDNA
LIBEST_024784 ICC4958 PEG induced drought cDNA librarycDNA
LIBEST_024782 ICC4958 field drought stressed root cDNA librarycDNA
LIBEST_024779 ICC1882 Slow drought stressed root cDNA librarycDNA
LIBEST_024777 ICC1882 dehydration stressed root cDNA librarycDNA
LIBEST_024778 ICC1882 field drought stressed root cDNA librarycDNA
LIBEST_024573 Chickpea cv. WR315 infected by Fusarium oxysporum f. sp. ciceri (Race 1)cDNA
LIBEST_024572 Chickpea cv. JG62 infected by Fusarium oxysporum f. sp. ciceri (Race 1)cDNA
LIBEST_023567 Subtracted cDNA library of drought-stressed chickpea cultivarcDNA
LIBEST_022499 Chickpea Ascochyta-Induced LibrarycDNA
LIBEST_021248 Ascochyta rabiei induced librarycDNA
LIBEST_022820 Drought-stressed chickpea leave librarycDNA
LIBEST_022821 Chickpea leave librarycDNA
LIBEST_020862 Chickpea Insect-Induced LibrarycDNA
LIBEST_020668 subtracted cDNA library of drought stressed chickpeacDNA
LIBEST_020952 Differentially expressed genes in chickpea under dehydration stresscDNA
LIBEST_020508 Chickpea pGEMT cDNA clonescDNA
LIBEST_016683 Chickpea (ICC3996) post-inoculation EST librarycDNA
LIBEST_013933 chickpea leaf cDNA-AFLP fragmentscDNA
LIBEST_017640 cDNA-RAPD Chickpea roots challenged by Fusarium oxysporum f. sp. ciceri Race 1cDNA
LIBEST_017639 cDNA-AFLP Chickpea roots challenged by Fusarium oxysporum f. sp. ciceri Race 1cDNA
LIBEST_014284 chickpea root cDNAcDNA
LIBEST_015041 Cicer arietinum cv. pedrosillano CAN-5cDNA
LIBEST_013035 subtracted cDNA library of drought-stressed chickpeacDNA
LIBEST_001193 chickpea mRNA CAN-5cDNA
LIBEST_014674 Suppressive subtractive hybridization librarycDNA
LIBEST_002716 Cicer arietinum etiolated epicotyls 5 days old seedlingscDNA
LIBEST_001290 chickpea mRNA CAP-4cDNA
Cicer arietinum (chickpea) grain legume BAC library1clone
Cicer arietinum (chickpea) BAC library 1clone
CAN-5clone
CAP-4clone
lambda ZAPclone
lambda EMBL-3clone
EFGC fragment amplified from Cicer arietinusclone
CysPr1 fragment amplified from Cicer arietinusclone
UDPGD fragment amplified from Cicer arietinusclone
CYB6 fragment amplified from Cicer arietinusclone
lambda gt11clone
germinating cotyledons cDNA libraryclone
cDNA libraryclone
Cicar 1clone
lambda gt10clone
Can-5clone
tRALS fragment amplified from Cicer arietinusclone
CALTL fragment amplified from Cicer arietinum genomic DNAclone
lambda ZAP IIclone
lambda-ZAPIIclone
lambda Zapclone
Maps
Map Name Map Details
chickpea-C214xILC3279-F2
Map Type : genetic
Population Type : F2
chickpea-C214xWR315-F2
Map Type : genetic
Population Type : F2
chickpea-Hadas-2010
Map Type : genetic
chickpea-HadasxICC5810-RIL
Map Type : genetic
Population Type : RIL
chickpea-ICC12004xLasseter-F2
Map Type : genetic
Population Type : F2
chickpea-ICC4958xPI489777-RIL-F10-2012
Map Type : genetic
Population Type : RIL
chickpea-ICC4991xICCV04516-F2
Map Type : genetic
Population Type : F2
chickpea-ICCV2xJG11-RIL
Map Type : genetic
Population Type : RIL
chickpea-ICCV2xJG62-F10-RIL
Map Type : genetic
Population Type : RIL
chickpea-ICCV2xJG62-RIL
Map Type : genetic
Population Type : RIL
chickpea-ICCV2xJG62-RIL-F10-2011
Map Type : genetic
Population Type : RIL
chickpea-ICCV96029xAmit-F2
Map Type : genetic
Population Type : F2
chickpea-ICCV96029xCDCCorinne-F2
Map Type : genetic
Population Type : F2
chickpea-ICCV96029xCDCFrontier-F2
Map Type : genetic
Population Type : F2
chickpea-ICCV96029xCDCFrontier-F2-2007
Map Type : genetic
Population Type : RIL
chickpea-ICCV96029xCDCLuna-F2
Map Type : genetic
Population Type : F2
chickpea-ILC3279xICCV2-F3
Map Type : genetic
Population Type : F2:3
chickpea-ILC3279xWR315-RIL
Map Type : genetic
Population Type : RIL
chickpea-ILC3279xWR315-RIL-2007
Map Type : genetic
Population Type : RIL
chickpea-ILC588xILC3279-RIL
Map Type : genetic
Population Type : RIL
chickpea-ILC588xILC3279-RIL-F6
Map Type : genetic
Population Type : RIL
chickpea-JG62xVijay-RIL-2011
Map Type : genetic
Population Type : RIL
chickpea-JG62xVijay-VijayxICC4958-RIL
Map Type : genetic
Population Type : RIL
chickpea-LasseterxICC3996-F6-RIL
Map Type : genetic
Population Type : RIL
chickpea-S95362xHowzat-F6-RIL
Map Type : genetic
Population Type : RIL
chickpea-VijayxICC4958-RIL-2011
Map Type : genetic
Population Type : RIL
chickpea-ICC4958
Map Type : physical
Chickpea-CPR-01_x_CRP-01-RIL-genetic
Map Type : genetic
Population Type : RIL
Chickpea-CPR-01_x_CRP-01-RIL-physical
Map Type : physical
Population Type : RIL
Chickpea-RIP-7_x_RIP-11-RIL-genetic
Map Type : genetic
Population Type : RIL
Chickpea-RIP-1_x_RIP-1-RIL-genetic
Map Type : genetic
Population Type : RIL
Chickpea-ICC4958_x_ICC1882-RIL-2018
Map Type : Genetic
Population Type : RIL
Population Size : 232
chickpea-ICCV96029×CDCFrontier-F2-2017
Map Type : genetic
Population Type : F2
Population Size : 190
chickpea-ICC5810×CDCFrontier-F2-2017
Map Type : genetic
Population Type : F2
Population Size : 190
chickpea-BGD132×CDCFrontier-F2-2017
Map Type : genetic
Population Type : F2
Population Size : 190
chickpea-ICC16641×CDCFrontier-F2-2017
Map Type : genetic
Population Type : F2
Population Size : 146
chickpea-flowering_time_consensus_map-F2-2017
Map Type : genetic
Comments : Consensus map of crosses ICCV_96029_×_CDC_Frontier, ICC_5810_×_CDC_Frontier, BGD_132_×_CDC_Frontier, and ICC_16641_×_CDC_Frontier
Chickpea-ICC4958_x_ICC8261-RIL-2016
Map Type : genetic
Population Type : RIL
Population Size : 277
Chickpea-CA2156_x_JG62-RIL
Map Type : genetic
Population Type : RIL
Chickpea-ILC3279_x_JG62-RIL
Map Type : genetic
Population Type : RIL
Chickpea-JG62_x_ILC72-RIL
Map Type : genetic
Population Type : RIL
Chickpea-Physical_consensus
Map Type : physical
Comments : Physical_consensus
Chickpea-ICCV96029_x_CDCFrontier-RIL
Map Type : genetic
Population Type : RIL
Chickpea-ICCX-810800xICC 20268-RIL
Map Type : genetic
Population Type : RIL
Chickpea-ICC3996xS95362-RIL
Map Type : genetic
Population Type : RIL
Chickpea-JG62xVijayxVijayxICC4958-RIL
Map Type : genetic
Population Type : RIL
Chickpea-ICCL81001_x_Cr5-9-RIL
Map Type : genetic
Population Type : RIL
Chickpea-ICC718xICC15061-F4
Map Type : genetic
Population Type : F4
Population Size : 221
Chickpea-K850xWR315-RIL
Map Type : genetic
Population Type : RIL
Chickpea-JG62_X_WR315-RIL
Map Type : genetic
Population Type : RIL
Chickpea-ICC4958× ICC1882-RIL
Map Type : genetic
Population Type : RIL
Chickpea_SBD377_X_BGD112_RIL
Map Type : genetic
Population Type : RIL
Population Size : 177
chickpea-ICC4958xICC17163-RIL
Map Type : genetic
Population Type : RIL
Population Size : 190
Chickpea_Yorker/Genesis114-RIL
Map Type : genetic
Population Type : RIL
Population Size : 192
chickpea-ICC4567xICC15614-RIL
Map Type : genetic
Population Type : RIL
Population Size : 292
Chickpea-ICC12299_x_ICC8261-RIL
Map Type : genetic
Population Type : RIL
Population Size : 275
Chickpea-CPR02-RIL
Map Type : genetic
Population Type : RIL
Population Size : 133
Chickpea-JG62/ICCV05530-RIL
Map Type : genetic
Population Type : RIL
Population Size : 188
Chickpea-ICC4958/ICC12299-RIL
Map Type : genetic
Population Type : RIL
Population Size : 236
Germplasm
NameType
106867cultivar
106872cultivar
106941cultivar
110217cultivar
110219cultivar
110221cultivar
110409cultivar
110410cultivar
110467cultivar
209cultivar
2728(8)cultivar
81001cultivar
Amitbreeding_research_material
Annigericultivar
Annigeri-1cultivar
BG 1054cultivar
BG 1088cultivar
BG 1103cultivar
BG 1105cultivar
BG 1108cultivar

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Unigenes
Below is a list of unigenes available for Cicer arietinum. Click the unigene name for further details.
Unigene NameAnalysis NameDate ConstructedStats
Cicer arietinum unigene v1Cicer arietinum unigene v12010-12-27Reads: 34,985
Contigs: 3,755
Singlets: 9,690
Transcripts

Below is a list of transcript assemblies that are available for Cicer arietinum. Click the assembly name for further details.

 
Assembly Name Analysis Name Date Constructed Stats
Cicer arietinum RefTrans V2 C. arietinum CSFL RefTrans V2 2017-09-25 RNA-Seq Reads: 1.0 billion
EST Reads: 52,788
Assembled Contigs: 56,176
Cicer arietinum RefTrans V1 C. arietinum CSFL RefTrans V1 2015-10-19 RNA-Seq Reads: 426 million
EST Reads: 44,618
Assembled Contigs: 50,864
Cicer arietinum unigene v1 Cicer arietinum unigene v1 2010-12-27 EST Reads: 34,985
Contigs: 3,755
Singlets: 9,690
Community Annotation

Manual curation of genomes is very time consuming, but improves the quality of genome annotations.  Most manual curations are done on a community level with multiple research groups participating and dividing up the work.

The Genome Sequence Annotation Server (GenSAS) allows for community curation of the published annotations using the integrated Web Apollo and JBrowse, but also allows users to run annotation tools that can be used in the annotation process.

We have created projects for both C. arietinum chromosome scaffolds and are hosting them in GenSAS for community annotation.  If you would like to participate, please request a GenSAS account and type "chickpea annotation" in the "Purpose" field.  Then please use the CSFL contact form and let us know your GenSAS user name and your desire to work on the chickpea annotation.  We will give you access to the GenSAS projects for these genomes.  

If you would like to coordinate the community annotation efforts, please let us know.  We are looking for members of the chickpea research community to set the annotation standards and monitor the community annotation.