Cicer reticulatum L. PI489777 genome v2

Genome Overview
Analysis NameCicer reticulatum L. PI489777 genome v2
MethodIllumina HiSeq, assembly with AllPaths (v2.0)
Sourcewild progenitor of chickpea, NIPGR
Date performed2019-07-26

Publication:

Gupta et al. 2016. Draft genome sequence of Cicer reticulatum L., the wild progenitor of chickpea provides a resource for agronomic trait improvement. DNA Research 

About the Assembly:

The data uploaded to PCD was directly provided by the authors.  This data was also submitted to NCBI and can be found under BioProject PRJNA263699.

Assembly Stats (from NCBI record):

Total sequence length 416,904,123
Number of scaffolds 3,657
Scaffold N50 55,213,382
Scaffold L50 4
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C. reticulatum L. PI489777, Genome Assembly v2 Files:

Please see the PCD Data Repository, or click on links below.

Homology Analysis Results:

These homology analyses were conducted using the proteins sequences from the genome and blastp (blast+, v2.10.0).  The proteins were queried against the UniProt SwissProt (-outfmt 7 -evalue 1e-6 -max_target_seqs 10) and TrEMBL (-evalue 1e-6 -max_target_seqs 1 -outfmt 7) databases.