Work Completed

  • October 2022 PCD Newsletter sent (10/31/2022)
  • MegaSearch Ortholog/paralog search added (10/28/2022)
  • The P. acutifolius acc. W6 15578 and P. lunatus cv. G27455 genomes now available in PathwayCyc.  PathwayCyc updated to v26.0 (5/4/2022)
  • P. lunatus cv. G27455 added to Chado, Blast, JBrowse (4/14/2022)
  • P. acutifolius acc. W6 15578 v2.0 added to Chado, Blast, JBrowse (4/6/2022)
  • Ortholog/paralog search added (4/5/2022)
  • Monthly PCD email with Marker Search video (3/24/2022)
  • Lentil genomes and Tepary Bean (P. acutifolius Frijol Bayo) added to PathwayCyc (3/16/2022)
  • P. acutifolius Frijol Bayo v1 genome added to chado, Blast, JBrowse (3/16/2022)
  • Lentil genomes (L. culinaris CDC Redberry v2.0 and L. ervoides IG 72815 v1.0) added to chado, Blast, JBrowse (2/11/2022)
  • 2nd PCD Newsletter published (1/28/2022)
  • Lupinus albus genome added to PathwayCyc (12/23/2021)
  • New Lupin data: map (1), QTL (21), markers (105) (12/23/2021)
  • Lupinus albus cv. AMIGA genome added to Chado, Blast, and JBrowse(12/3/2021)
  • New Faba data: maps (2), markers (52) (12/2/2021)
  • New Chickpea data: markers (233) (11/16/2021)
  • New Chickpea data: markers (11) (11/16/2021)
  • New Pigeon pea data: markers (289) (11/2/2021)
  • New Chickpea data: markers (11) (10/18/2021)
  • New Lathyrus data: markers (5651) (10/11/2021)
  • New Faba data: markers (4) (10/11/2021)
  • New Vigna data: markers (252) (10/6/2021)
  • New Lentil data: markers (26) (10/6/2021)
  • New Lentil data: map (1), QTL (7), markers (927) (10/5/2021)
  • New Vigna data: markers (8) (10/5/2021)
  • New Vigna data: map (1), markers (175) (9/29/2021)
  • Added a Newsletter Page and sent first PCD newsletter (9/27/2021)
  • New Vigna data: map (2), QTL (2), markers (60) (9/20/2021)
  • New Vigna data: map (1), markers (91) (9/20/2021)
  • New Vigna data: markers (167) (9/20/2021)
  • New Vigna data: markers (65) (9/20/2021)
  • New Bean data: map (1), QTL (44) (9/15/2021)
  • New Lentil data: map (1), QTL (1) (9/15/2021)
  • New Lentil data: map (3), QTL (3), trait (1), markers (5) (9/15/2021)
  • New Lupin data: markers (110) (9/9/2021)
  • New Lupin data: map (1), markers (239), MTL (1) (9/9/2021)
  • New Lupin data: markers (22) (9/9/2021)
  • New Pea data: markers (752) (9/1/2021)
  • New Bean data: markers (17) (8/10/2021)
  • New Bean data: markers (7) (8/10/2021)
  • New Chickpea data: markers (12) (8/10/2021)
  • New Chickpea data: map (1), QTL (28), markers (91) (8/9/2021)
  • New Cowpea data: map (1), QTL (6), traits (1), markers (103) (8/9/2021)
  • New Faba data: map (1), markers (1) (8/9/2021)
  • New Faba data: QTL (13), traits (4) (8/9/2021)
  • New Vigna data: markers (10) (8/9/2021)
  • New Faba data: library (1), markers (130280) (8/5/2021)
  • New Bean data: markers (14) (7/28/2021)
  • New Bambara data: maps (2), QTL (1), markers (3764) (7/21/2021)
  • New Bean data: markers (12) (7/21/2021)
  • New Faba data: map (1), QTL (12), markers (88) (7/21/2021)
  • New Lentil data: map (1), QTL (13), trait (1), markers (4073) (7/21/2021)
  • New Lupin data: map (1), QTL (1), markers (2314) (7/21/2021)
  • New Vigna data: markers (75) (7/21/2021)
  • New Pea data: map (1), QTL (55) (6/24/2021)
  • New Vigna data: markers (19) (6/24/2021)
  • New Cowpea data: markers (15) (6/24/2021)
  • New Chickpea data: markers (45), map (1), QTL (16) (6/24/2021)
  • New Bean data: markers (2) (6/24/2021)
  • New Cajanus NCBI gene and mRNA data, added 181685 sequences (5/28/2021)
  • New Lupinus NCBI gene and mRNA data, added 119538 sequences (5/28/2021)
  • New Phaseolus NCBI gene and mRNA data, added 1282467 sequences (5/28/2021)
  • New Vigna NCBI gene and mRNA data, added 348676 sequences (5/28/2021)
  • New Vicia NCBI gene and mRNA data, added 993 new sequences (5/28/2021)
  • New Lens NCBI gene and mRNA data, added 6126 new sequences (5/28/2021)
  • New Cicer NCBI gene and mRNA data, added 115 new sequences (5/28/2021)
  • New Pisum NCBI gene and mRNA data, added 2580 new sequences (5/28/2021)
  • New Bean data: markers (17583), maps (6), QTL (70), traits (3) (5/28/2021)
  • New Lupin data: markers (17) (5/28/2021)
  • New Chickpea data: markers (80) (5/28/2021)
  • New Chickpea data: markers (880), map (1), QTL (54), trait (1) (4/2/2021)
  • New Bean data: markers (6311) (4/2/2021)
  • New Vigna data: markers (1799), map (1), QTL (2) (4/2/2021)
  • New Faba data: markers (1091) (4/2/2021)
  • New Lentil data: markers (44) (3/19/2021)
  • New Pigeon pea data: markers (113), map (1), QTL (15) (3/18/2021)
  • New Bean data: markers (5739), map (1), QTL (5) (3/13/2021)
  • Protein sequences for all the genomes added to Chado (3/9/2021)
  • New Bean data: markers (68) (3/5/2021)
  • New Faba bean data: maps (1), markers (298), QTL (4) (1/22/2021)
  • New Bean data: maps (1), markers (12), QTL (25), traits (1) (1/22/2021)
  • New Lupinus data: maps (2), markers (888), QTL (17) (11/20/2020)
  • New Vigna data: maps (1), markers (1946), QTL (12) (11/13/2020)
  • New Chickpea data: maps (1), markers (839), QTL (19) (11/13/2020)
  • New Cowpea data: maps (2), markers (405), QTL (8), traits (2) (11/06/2020)
  • New Chickpea data: maps (1), markers (8210) (11/06/2020)
  • New Bean data: maps (3), markers (80), QTL (66), traits (5) (10/30/2020)
  • New Bean data: maps (1), QTL (29) (10/23/2020)
  • New Bean data: maps (2), traits (3), QTL (13) (10/16/2020)
  • New Bean data: markers (112) (10/12/2020)
  • New Chickpea data: markers (2083), maps (3), QTL (18), traits (4) (10/5/2020)
  • New Bambara data: markers (238), map (1), QTL (37), trait (3) (10/5/2020)
  • New Cowpea data: markers (17994), map (2), QTL (12) (9/25/2020)
  • New Pea data: map (1) (8/12/2020)
  • New Pea data: markers (1374), map (1) (8/6/2020)
  • New Cowpea data: markers (376), map (1), QTL (34), phenotype (90) (8/6/2020)
  • New Black Gram data: markers (6), QTL (10) (8/6/2020)
  • New Lupin data: QTL (1) (8/6/2020)
  • New Bean data: markers (116) (8/6/2020)
  • New Pea data: markers (157), maps (1), QTL (13) (7/17/2020)
  • New Faba data: markers (663), maps (4), QTL (26) (7/17/2020) 
  • New Cowpea data: markers (708) (7/17/2020)
  • Adzuki bean (Jingnong 6) synteny added (7/9/2020)
  • Adzuki bean (Jingnong 6) PathwayCyc added (6/26/2020)
  • New Chickpea data: traits (1), QTL (11) (6/10/2020)
  • New Lentil data: markers (6143), QTL (1), maps (1) (6/10/2020)
  • New Bean data: traits (2), QTL (53), markers (2628), maps (1) (6/10/2020)
  • New Pea data: markers (11) (6/10/2020)
  • New Faba Bean data: markers (2356), maps (5) (6/10/2020)
  • New Cowpea data: markers (10) (6/10/2020)
  • New Lentil data: markers (889), maps (2), traits (2), QTL (15) (5/22/2020)
  • New Adzuki genome (Jingnong6) added to PCD, Blast, JBrowse (5/21/20)
  • New PathwayCycs for ICC4958 (v3) and PI489777 (v2) added (5/1/2020)
  • Updated versions of ICC4958 (v3) and PI489777 (v2) genomes added to database, JBrowse, and BLAST (4/17/2020)
  • New Lentil data: markers (2,865), QTL(19), map (1) (4/16/2020)
  • New Pigeon pea data: markers (55,882), QTL (11), map (1) (4/10/2020)
  • New Bean data: marker sequences (12) (4/7/2020)
  • New Vetch data: markers (5) (3/26/2020)
  • New Cowpea data: markers (109) (3/10/2020)
  • New Bean data: markers (23) (3/10/2020)
  • New Vicia data: markers (8) (3/3/2020)
  • Lupin genome added to Synteny Viewer (2/18/20)
  • Lupin PathwayCyc added (2/6/2020)
  • New Vigna data: markers (14) (2/6/2020)
  • New Chickpea data: markers (7523) (2/3/2020)
  • Lupinus angustifolius cv. Tanjil v1.0 genome added to PCD, and corrected in BLAST and JBrowse (1/28/2020)
  • New Pea data: genetic map (1), QTL (12), markers (6453), phenotype measurements (66), trait (1) (1/28/2020)
  • New Vigna data: genetic map (1), QTL (4), markers (100) (1/27/2020)
  • New Bean data: genetic map (1), QTL (29), phenotype measurements (96), traits (6) (1/27/2020)
  • New Cowpea data: genetic map (1), markers (32125), QTL (17) (1/27/2020)
  • New Faba data: genetic map (1), markers (17), QTL (12), phenotype measurements (228) (1/27/2020)
  • New Vigna data: genetic map (4), markers (149), QTL (124), MTL (2), phenotype measurements (227), traits (2) (1/17/2020)
  • New Vigna data: genetic map (1), markers (1503), QTL (13) (1/13/2020)
  • New Pea data: markers(54) (1/13/2020)
  • New Lentil data: genetic map (1), markers (543), QTL (14) (1/13/2020)
  • New Lentil data: genetic map (1), QTL (39), phenotype measurements (72), traits (3) (1/7/2020)
  • New Pea data: genetic map (1), markers (12033), QTL (9) (1/7/2020)
  • New Chickpea data: genetic maps (9), markers (9212), QTL (134), phenotype measurements (105), trait (1) (1/7/2020)
  • New Pea data: genetic maps (13), markers (15000) (12/17/2019)
  • New Pea data: genetic map (1), marker loci (64038) (12/13/2019)
  • New genetic markers: common bean (29), pea (3), faba (3), vetch (16)
  • New Pigeonpea data: genetic markers (56070) (12/5/2019)
  • New Chickpea data: genetic markers (1153) (12/5/2019)
  • New Lentil data: genetic markers (5090) (12/5/2019)
  • New Bean data: genetic markers (237), MTL (1), genetic map (1) (12/5/2019)
  • New Cowpea data: genetic markers (14972) (11/22/2019)
  • New Bambara data: genetic markers (293), genetic map (1), QTL (67), traits (5) (11/21/2019)
  • Pigeon Pea PathwayCyc added (11/19/19)
  • New Lupin data: genetic map (1) (11/14/2019)
  • Bean PathwayCyc added (11/14/19)
  • Cowpea PathwayCyc added (11/4/19)
  • New Lupin data: genetic markers (2875), genetic map (2), QTL (18), MTL (5), traits (3) (11/5/2019)
  • New Lupin data: genetic markers (355), genetic map (1) (11/4/2019)
  • New Lupin data: genetic markers (52) (10/31/19)
  • New Lupin data: genetic markers (9412), genetic map (1) (10/30/19)
  • New Lupin data: genetic markers (17 new, 114 additional info) (10/29/19)
  • Pea PathwayCyc added (10/24/19)
  • Cowpea, Pigeon Pea, and Bean added to Synteny Viewer (10/23/19)
  • Pea added to Synteny Viewer (10/21/19)
  • Vigna unguiculata IT97K-499-35 v1.1, Phaseolus vulgaris v2.1, and Cajanus cajan v1.0 genomes loaded into chado (10/18/19)
  • New Lupin data added: genetic markers (4722), genetic maps (2), QTL (33), MTL (8), traits (3) (10/17/2019)
  • New Lupin data added: genetic markers (1579) (10/11/2019)
  • New Vetch data added: genetic markers (39) (10/10/2019)
  • New Pigeon pea data added: genetic markers (33162), genetic maps (9), QTL (19), MTL (1), traits (7) (10/10/2019)
  • BIMS: Bambara GRIN data uploaded, accessions (42), descriptors (2), phenotype measurements (43) (9/12/2019)
  • BIMS: Lupin GRIN data uploaded, accessions (1159), descriptors (46), phenotype measurements (6040) (9/12/2019)
  • BIMS: Phaseolus GRIN data uploaded, accessions (17802), descriptors (80), phenotype measurements (277484) (9/9/2019)
  • BIMS: Pigeon pea GRIN data uploaded, accessions (3994), descriptors (10), phenotype measurements (39548) (9/11/2019)
  • BIMS: Vetch GRIN data uploaded, accessions (1476), descriptors (35), phenotype measurements (6371) (9/12/2019)
  • BIMS: Cowpea GRIN data uploaded, accessions (11499), descriptors (32), phenotype measurements (103969) (9/10/2019)
  • New Cowpea data added: genetic markers (92741), genetic maps (12), QTL (363), traits (13) (9/24/2019)
  • Pea genome loaded into chado (9/16/19)
  • Cowpea, Pigeon Pea, Lupin, Bean genomes added to JBrowse and BLAST (9/5/19)
  • Pea genome added to JBrowse and BLAST (9/4/19)
  • New Common Bean data added: genetic markers (12350), genetic maps (4), QTL (326), MTL (1), traits (10) (9/12/2019)
  • New Common Bean data added: genetic markers (13923), genetic maps (12), QTL (181), traits (14) (8/29/2019)
  • Converted site from CSFL to PCD and upgraded to Tripal 3 (08/30/2019)
  • New data added: genetic map (1), genetic markers (3625) (7/10/2019)
  • New data added: germplasm (17), genetic maps (8), genetic markers(1557), QTL (91), traits(6) (7/1/2019)
  • New data added: genetic maps (2), genetic markers (63378) (6/26/2019)
  • MegaSearch added (6/4/2019)
  • New InterProScan analysis added: InterProScan: C. reticulatum PI489777 genome v1 (5/28/2019)
  • New InterProScan analysis added: InterProScan: C. arietinum ICC 4958, v2.0 (desi) (5/21/2019)
  • New BLAST analysis added: BLAST: C. reticulatum PI489777 genome v1 Swissprot (5/21/2019)
  • New BLAST analysis added: BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot (5/21/2019)
  • New BLAST analysis added: BLAST: C. arietinum CDC Frontier (kabuli), Swissprot (5/21/2019)
  • New data added: germplasm (2), genetic map (1), genetic markers (6154), QTL (10), traits (2) (4/24/2019)
  • New data added: germplasm (11), genetic maps (5), genetic markers (5695), QTL (128), traits (4) (Q1 2019)
  • GRIN data added to BIMS (12/5/18)
  • Dot plot, Correspondence matrix and PNG export functionality added for MapViewer, available (08/2018)
  • MapViewer updated with dynamic drawing element positioning for QTLs and Correspondences (06/2018)
  • New Synteny Viewer for Cicer genomes added (7/2018)
  • MapViewer map visualization tool added (01/2017) 
  • C. arietinum ICC 4958 PathwayCyc added to CSFL (11/7/17)
  • RefTrans v2 completed for all 4 crops and available in CSFL (11/7/17)
  • Tripal BLAST module replaces BLAST and batch BLAST, NCBI ESTs updated for all crops (6/14/17)
  • C. reticulatum PI489777 PathwayCyc added (2/1/17)
  • CSFL Video Tutorials added (1/7/17)
  • C. reticulatum PI489777 gene models and scaffolds added to database (1/5/17)
  • Alignment of CSFL Chickpea RefTrans v1 added as JBrowse track for C. reticulatum genome (12/15/16)
  • C. arietinum ICC 4958 gene models and scaffolds added to database (11/30/16)
  • More faba bean and chickpea publication data added to database (11/30/16)
  • C. reticulatum PI489777 genome added to BLAST and Batch BLAST tools (11/28/16)
  • CSFL User Manual added under Help menu (11/21/16)
  • Homology Analysis of C. reticulatum PI489777 v1 genome CDS vs. Swissprot and TrEMBL added to PI489777 genome download page (11/18/16)
  • DNA and RNA SRA dataset tables under "Data Download" updated (11/16/16)
  • Cicer genome assemblies and related model genomes (Medicago truncatula, Lotus japonicus, Glycine max) added to BLAST and Batch BLAST (11/10/16)
  • C. reticulatum PI489777 genome added to JBrowse and genome page for chickpea (11/3/16)
  • Alignment of CSFL Chickpea RefTrans v1 added as JBrowse track for C. arietinum genomes (10/18/16)
  • Homology Analysis of C. arietinum ICC 4958 v2.0 genome CDS vs. Swissprot and TrEMBL added to ICC 4958 genome download page (9/8/16)
  • Addition of P. sativum Reference Transcriptome (4/20/16)
  • A list of marker types and links to information about each added under "Data" menu (4/14/16) 
  • ChickpeaCyc updated (4/8/16)
  • Table with CSFL QTL trait abbreviations added (3/7/16)
  • Addition of links to DNA and RNA NCBI SRA database datasets under "Data Download" (1/26/16)
  • Addition of L. culinaris and V. faba Reference Transcriptomes (RefTrans)  (12/23/15)
  • Current marker (50,526), map (18), and QTL (150) data added for lentil (12/1/15)
  • Current marker (31,069), map (40), and QTL (505) data added for chickpea (11/2/15)
  • Current marker (7,064), map (28), and QTL (775) data added for pea  (11/2/15)
  • Current marker (2,329), map (11), and QTL (105) data added for faba bean  (11/2/15)
  • C. arietinum ICC 4958 genome added to JBrowse and BLAST  (11/2/15)
  • Addition of C. arietinum Reference Transcriptome (RefTrans)  (11/2/15)
  • Major website redesign for more efficient usability  (11/2/15)
  • Replacement of GBrowse with JBrowse  (11/2/15)
  • Improved the data overview page to dynamically update as data is added to the database  (11/2/15)

Archive of work completed before redesign