Work Completed

  • Cowpea PathwayCyc added (11/4/19)
  • New Lupin data: genetic markers (2875), genetic map (2), QTL (18), MTL (5), agronomic traits (3) (11/5/2019)
  • New Lupin data: genetic markers (355), genetic map (1) (11/4/2019)
  • New Lupin data: genetic markers (52) (10/31/19)
  • New Lupin data: genetic markers (9412), genetic map (1) (10/30/19)
  • New Lupin data: genetic markers (17 new, 114 additional info) (10/29/19)
  • Pea PathwayCyc added (10/24/19)
  • Cowpea, Pigeon Pea, and Bean added to Synteny Viewer (10/23/19)
  • Pea added to Synteny Viewer (10/21/19)
  • Vigna unguiculata IT97K-499-35 v1.1Phaseolus vulgaris v2.1, and Cajanus cajan v1.0 genomes loaded into chado (10/18/19)
  • New Lupin data added: genetic markers (4722), genetic maps (2), QTL (33), MTL (8), agronomic traits (3) (10/17/2019)
  • New Lupin data added: genetic markers (1579) (10/11/2019)
  • New Vetch data added: genetic markers (39) (10/10/2019)
  • New Pigeon pea data added: genetic markers (33162), genetic maps (9), QTL (19), MTL (1), agronomic traits (7) (10/10/2019)
  • BIMS: Bambara GRIN data uploaded, accessions (42), descriptors (2), phenotype measurements (43) (9/12/2019)
  • BIMS: Lupin GRIN data uploaded, accessions (1159), descriptors (46), phenotype measurements (6040) (9/12/2019)
  • BIMS: Phaseolus GRIN data uploaded, accessions (17802), descriptors (80), phenotype measurements (277484) (9/9/2019)
  • BIMS: Pigeon pea GRIN data uploaded, accessions (3994), descriptors (10), phenotype measurements (39548) (9/11/2019)
  • BIMS: Vetch GRIN data uploaded, accessions (1476), descriptors (35), phenotype measurements (6371) (9/12/2019)
  • BIMS: Cowpea GRIN data uploaded, accessions (11499), descriptors (32), phenotype measurements (103969) (9/10/2019)
  • New Cowpea data added: genetic markers (92741), genetic maps (12), QTL (363), agronomic traits (13) (9/24/2019)
  • Pea genome loaded into chado (9/16/19)
  • Cowpea, Pigeon Pea, Lupin, Bean genomes added to JBrowse and BLAST (9/5/19)
  • Pea genome added to JBrowse and BLAST (9/4/19)
  • New Common Bean data added: genetic markers (12350), genetic maps (4), QTL (326), MTL (1), agronomic traits (10) (9/12/2019)
  • New Common Bean data added: genetic markers (13923), genetic maps (12), QTL (181), agronomic traits (14) (8/29/2019)
  • Converted site from CSFL to PCD and upgraded to Tripal 3 (08/30/2019)
  • New data added: genetic map (1), genetic markers (3625) (7/10/2019)
  • New data added: germplasm (17), genetic maps (8), genetic markers(1557), QTL (91), agronomic traits(6) (7/1/2019)
  • New data added: genetic maps (2), genetic markers (63378) (6/26/2019)
  • MegaSearch added (6/4/2019)
  • New InterProScan analysis added: InterProScan: C. reticulatum PI489777 genome v1 (5/28/2019)
  • New InterProScan analysis added: InterProScan: C. arietinum ICC 4958, v2.0 (desi) (5/21/2019)
  • New BLAST analysis added: BLAST: C. reticulatum PI489777 genome v1 Swissprot (5/21/2019)
  • New BLAST analysis added: BLAST: C. arietinum ICC 4958 v2.0 (desi) Swissprot (5/21/2019)
  • New BLAST analysis added: BLAST: C. arietinum CDC Frontier (kabuli), Swissprot (5/21/2019)
  • New data added: germplasm (2), genetic map (1), genetic markers (6154), QTL (10), agronomic traits (2) (4/24/2019)
  • New data added: germplasm (11), genetic maps (5), genetic markers (5695), QTL (128), agronomic traits (4) (Q1 2019)
  • GRIN data added to BIMS (12/5/18)
  • Dot plot, Correspondence matrix and PNG export functionality added for MapViewer, available (08/2018)
  • MapViewer updated with dynamic drawing element positioning for QTLs and Correspondences (06/2018)
  • New Synteny Viewer for Cicer genomes added (7/2018)
  • MapViewer map visualization tool added (01/2017) 
  • C. arietinum ICC 4958 PathwayCyc added to CSFL (11/7/17)
  • RefTrans v2 completed for all 4 crops and available in CSFL (11/7/17)
  • Tripal BLAST module replaces BLAST and batch BLAST, NCBI ESTs updated for all crops (6/14/17)
  • C. reticulatum PI489777 PathwayCyc added (2/1/17)
  • CSFL Video Tutorials added (1/7/17)
  • C. reticulatum PI489777 gene models and scaffolds added to database (1/5/17)
  • Alignment of CSFL Chickpea RefTrans v1 added as JBrowse track for C. reticulatum genome (12/15/16)
  • C. arietinum ICC 4958 gene models and scaffolds added to database (11/30/16)
  • More faba bean and chickpea publication data added to database (11/30/16)
  • C. reticulatum PI489777 genome added to BLAST and Batch BLAST tools (11/28/16)
  • CSFL User Manual added under Help menu (11/21/16)
  • Homology Analysis of C. reticulatum PI489777 v1 genome CDS vs. Swissprot and TrEMBL added to PI489777 genome download page (11/18/16)
  • DNA and RNA SRA dataset tables under "Data Download" updated (11/16/16)
  • Cicer genome assemblies and related model genomes (Medicago truncatula, Lotus japonicus, Glycine max) added to BLAST and Batch BLAST (11/10/16)
  • C. reticulatum PI489777 genome added to JBrowse and genome page for chickpea (11/3/16)
  • Alignment of CSFL Chickpea RefTrans v1 added as JBrowse track for C. arietinum genomes (10/18/16)
  • Homology Analysis of C. arietinum ICC 4958 v2.0 genome CDS vs. Swissprot and TrEMBL added to ICC 4958 genome download page (9/8/16)
  • Addition of P. sativum Reference Transcriptome (4/20/16)
  • A list of marker types and links to information about each added under "Data" menu (4/14/16) 
  • ChickpeaCyc updated (4/8/16)
  • Table with CSFL QTL trait abbreviations added (3/7/16)
  • Addition of links to DNA and RNA NCBI SRA database datasets under "Data Download" (1/26/16)
  • Addition of L. culinaris and V. faba Reference Transcriptomes (RefTrans)  (12/23/15)
  • Current marker (50,526), map (18), and QTL (150) data added for lentil (12/1/15)
  • Current marker (31,069), map (40), and QTL (505) data added for chickpea (11/2/15)
  • Current marker (7,064), map (28), and QTL (775) data added for pea  (11/2/15)
  • Current marker (2,329), map (11), and QTL (105) data added for faba bean  (11/2/15)
  • C. arietinum ICC 4958 genome added to JBrowse and BLAST  (11/2/15)
  • Addition of C. arietinum Reference Transcriptome (RefTrans)  (11/2/15)
  • Major website redesign for more efficient usability  (11/2/15)
  • Replacement of GBrowse with JBrowse  (11/2/15)
  • Improved the data overview page to dynamically update as data is added to the database  (11/2/15)

Archive of work completed before redesign