Cicer arietinum ICC 4958 genome v3

Genome Overview
Analysis NameCicer arietinum ICC 4958 genome v3
Method454 and Illumina GAIIx (Assembly with Newbler v. 2.5.3 and ABySS v. 1.3.5)
SourceNIPGR
Date performed2019-04-22

Publication:

Parween et al. 2015. An advanced draft genome assembly of a desi type chickpea (Cicer arietinum L.).  Scientific Reports 5:12806

About the Assembly:

The data uploaded to PCD was directly provided by the authors.  This data was also submitted to NCBI and can be found under BioProject PRJNA78951.

Assembly Stats (from NCBI record):

Total sequence length 511,683,526
Number of scaffolds 30,401
Scaffold N50 50,183,001
Scaffold L50 5
Download

C. arietinum ICC 4958, Desi Type, Genome Assembly v3 Files:

Please see the PCD Data Repository, or click on links below.

Homology Analysis Results:

These homology analyses were conducted using the proteins sequences from the genome and blastp (blast+, v2.10.0).  The proteins were queried against the UniProt SwissProt (-outfmt 7 -evalue 1e-6 -max_target_seqs 10) and TrEMBL (-evalue 1e-6 -max_target_seqs 1 -outfmt 7) databases.