Lens ervoides acc. IG 72815 genome v1.0

Genome Overview
Analysis NameLens ervoides acc. IG 72815 genome v1.0
MethodOxford Nanopore, HiC, Illumina (assembly with smartdenovo, racon, ALLHiC)
SourceKnowPulse
Date performed2022-02-02

This assembly and annotation was provided by the authors before publication. The article is currently available on bioRxiv: Ramsay, L., Koh, C. S., Kagale, S., Gao, D., Kaur, S., Haile, T., ... & Bett, K. E. (2021). Genomic rearrangements have consequences for introgression breeding as revealed by genome assemblies of wild and cultivated lentil species.

About the assembly:

Number of scaffolds 1,141
Total size  2.87 Gbp
N50 396 Mbp
Assembly BUSCO score (embryophyta_odb10) 98.2%
Annotation BUSCO score (embryophyta_odb10) 96.1%
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Lens ervoides acc. IG 72815, Genome Assembly v1.0 Files:

The files will be available to downlaod after publication

 

Please see the PCD Data Repository for data available on PCD, or click on links below.

Homology Analysis Results:

These homology analyses were conducted using the proteins sequences from the genome and blastp (blast+, v2.11.0).  The proteins were queried against the UniProt SwissProt (-outfmt 7 -evalue 1e-6 -max_target_seqs 10) and TrEMBL (-evalue 1e-6 -max_target_seqs 1 -outfmt 7) databases.